CONSTRUCT { _:474462 up:source unirule:MF_01322 . _:474463 up:source unirule:MF_01322 . _:474464 up:source unirule:MF_01322 . _:474465 up:source unirule:MF_01322 . _:474466 up:source unirule:MF_01322 . _:474467 up:source unirule:MF_01322 . _:474468 up:source unirule:MF_01322 . _:474469 up:source unirule:MF_01322 . _:474470 up:source unirule:MF_01322 . _:474471 up:source unirule:MF_01322 . _:474472 up:source unirule:MF_01322 . _:474473 up:source unirule:MF_01322 . _:474474 up:source unirule:MF_01322 . _:474475 up:source unirule:MF_01322 . _:474476 up:source unirule:MF_01322 . _:474477 up:source unirule:MF_01322 . _:474478 up:source unirule:MF_01322 . _:474479 up:source unirule:MF_01322 . _:474480 up:source unirule:MF_01322 . _:474481 up:source unirule:MF_01322 . _:474482 up:source unirule:MF_01322 . _:474483 up:source unirule:MF_01322 . _:474484 up:source unirule:MF_01322 . _:474485 up:source unirule:MF_01322 . _:474486 up:source unirule:MF_01322 . _:474487 up:source unirule:MF_01322 . _:474488 up:source unirule:MF_01322 . _:474489 up:source unirule:MF_01322 . _:474490 up:source unirule:MF_01322 . _:474491 up:source unirule:MF_01322 . _:474492 up:source unirule:MF_01322 . _:474493 up:source unirule:MF_01322 . _:474494 up:source unirule:MF_01322 . _:474495 up:source unirule:MF_01322 . ?this up:alternativeName ?name1 , ?name2 ; up:annotation ?annotation4 , ?annotation5 , ?annotation7 , ?annotation8 ; up:classifiedWith GO:0003677 , GO:0003899 , GO:0006351 , keyword:240 , keyword:548 , keyword:804 , keyword:808 ; up:recommendedName ?name0 . ?name0 up:ecName '2.7.7.6' ; up:fullName "DNA-directed RNA polymerase subunit beta'" ; up:shortName "RNAP subunit beta'" ; rdf:type up:Structured_Name . ?name1 up:fullName "RNA polymerase subunit beta'" ; rdf:type up:Structured_Name . ?name2 up:fullName "Transcriptase subunit beta'" ; rdf:type up:Structured_Name . ?gene3 skos:prefLabel 'rpoC' . ?annotation4 a up:Function_Annotation ; rdfs:comment 'DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.' . ?annotation5 up:activity ?activity6 ; rdf:type up:Catalytic_Activity_Annotation . ?activity6 up:catalyticActivity <http://rdf.rhea-db.org/21248>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.7.6>. ?annotation7 a up:Subunit_Annotation ; rdfs:comment "The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription." . ?annotation8 a up:Similarity_Annotation ; rdfs:comment "Belongs to the RNA polymerase beta' chain family." . ?case9 up:classifiedWith GO:0000287 , keyword:460 . ?case10 up:classifiedWith GO:0008270 , keyword:862 . ?case12 up:classifiedWith keyword:479 . ?case13 up:classifiedWith keyword:7 . ?pfs14 up:annotation ?annotation15 , ?annotation21 , ?annotation27 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; up:ligand ?ligand18 ; rdf:type up:Binding_Site_Annotation . ?pfsb16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?ligand18 rdfs:subClassOf chebi:18420 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:18420 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; up:ligand ?ligand30 ; rdf:type up:Binding_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand30 rdfs:subClassOf chebi:18420 . ?pfs33 up:annotation ?annotation34 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; up:ligand ?ligand37 ; rdf:type up:Binding_Site_Annotation . ?pfsb35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?ligand37 rdfs:subClassOf chebi:29105 . ?pfs40 up:annotation ?annotation41 , ?annotation47 , ?annotation53 , ?annotation59 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation . ?pfsb42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf chebi:29105 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; up:ligand ?ligand50 ; rdf:type up:Binding_Site_Annotation . ?pfsb48 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?ligand50 rdfs:subClassOf chebi:29105 . ?annotation53 faldo:begin ?pfsb54 ; faldo:end ?pfse55 ; up:ligand ?ligand56 ; rdf:type up:Binding_Site_Annotation . ?pfsb54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfse55 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?ligand56 rdfs:subClassOf chebi:29105 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf chebi:29105 . ?pfs65 up:annotation ?annotation66 , ?annotation72 , ?annotation78 , ?annotation84 . ?annotation66 faldo:begin ?pfsb67 ; faldo:end ?pfse68 ; up:ligand ?ligand69 ; rdf:type up:Binding_Site_Annotation . ?pfsb67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?pfse68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?ligand69 rdfs:subClassOf chebi:29105 . ?annotation72 faldo:begin ?pfsb73 ; faldo:end ?pfse74 ; up:ligand ?ligand75 ; rdf:type up:Binding_Site_Annotation . ?pfsb73 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?pfse74 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?ligand75 rdfs:subClassOf chebi:29105 . ?annotation78 faldo:begin ?pfsb79 ; faldo:end ?pfse80 ; up:ligand ?ligand81 ; rdf:type up:Binding_Site_Annotation . ?pfsb79 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?pfse80 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?ligand81 rdfs:subClassOf chebi:29105 . ?annotation84 faldo:begin ?pfsb85 ; faldo:end ?pfse86 ; up:ligand ?ligand87 ; rdf:type up:Binding_Site_Annotation . ?pfsb85 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . ?pfse86 faldo:position ?thisPositionOn89 ; rdf:type faldo:ExactPosition . ?ligand87 rdfs:subClassOf chebi:29105 . ?pfs90 up:annotation ?annotation91 . ?annotation91 faldo:begin ?pfsb92 ; faldo:end ?pfse93 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb92 faldo:position ?thisPositionOn94 ; rdf:type faldo:ExactPosition . ?pfse93 faldo:position ?thisPositionOn95 ; rdf:type faldo:ExactPosition . _:474496 a rdf:Statement ; up:attribution _:474462 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:474497 a rdf:Statement ; up:attribution _:474463 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:474498 a rdf:Statement ; up:attribution _:474464 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:474499 a rdf:Statement ; up:attribution _:474465 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:474500 a rdf:Statement ; up:attribution _:474466 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:474501 a rdf:Statement ; up:attribution _:474467 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:474502 a rdf:Statement ; up:attribution _:474468 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:474503 a rdf:Statement ; up:attribution _:474469 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:474504 a rdf:Statement ; up:attribution _:474470 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:804 . _:474505 a rdf:Statement ; up:attribution _:474471 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:474506 a rdf:Statement ; up:attribution _:474472 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:548 . _:474507 a rdf:Statement ; up:attribution _:474473 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:240 . _:474508 a rdf:Statement ; up:attribution _:474474 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003677 . _:474509 a rdf:Statement ; up:attribution _:474475 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003899 . _:474510 a rdf:Statement ; up:attribution _:474476 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006351 . _:474511 a rdf:Statement ; up:attribution _:474477 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:474512 a rdf:Statement ; up:attribution _:474478 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:474513 a rdf:Statement ; up:attribution _:474479 ; rdf:subject ?case10 ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:474514 a rdf:Statement ; up:attribution _:474480 ; rdf:subject ?case10 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:474515 a rdf:Statement ; up:attribution _:474481 ; rdf:subject ?case12 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:474516 a rdf:Statement ; up:attribution _:474482 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object keyword:7 . _:474517 a rdf:Statement ; up:source unirule:MF_01322 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:474518 a rdf:Statement ; up:attribution _:474483 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:474519 a rdf:Statement ; up:source unirule:MF_01322 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:474520 a rdf:Statement ; up:attribution _:474484 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:474521 a rdf:Statement ; up:source unirule:MF_01322 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:474522 a rdf:Statement ; up:attribution _:474485 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:474523 a rdf:Statement ; up:source unirule:MF_01322 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:474524 a rdf:Statement ; up:attribution _:474486 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:474525 a rdf:Statement ; up:source unirule:MF_01322 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:474526 a rdf:Statement ; up:attribution _:474487 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:474527 a rdf:Statement ; up:source unirule:MF_01322 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:474528 a rdf:Statement ; up:attribution _:474488 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:474529 a rdf:Statement ; up:source unirule:MF_01322 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:474530 a rdf:Statement ; up:attribution _:474489 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:474531 a rdf:Statement ; up:source unirule:MF_01322 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:474532 a rdf:Statement ; up:attribution _:474490 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:474533 a rdf:Statement ; up:source unirule:MF_01322 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:474534 a rdf:Statement ; up:attribution _:474491 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:474535 a rdf:Statement ; up:source unirule:MF_01322 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:474536 a rdf:Statement ; up:attribution _:474492 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:474537 a rdf:Statement ; up:source unirule:MF_01322 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:474538 a rdf:Statement ; up:attribution _:474493 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:474539 a rdf:Statement ; up:source unirule:MF_01322 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation84 . _:474540 a rdf:Statement ; up:attribution _:474494 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation84 . _:474541 a rdf:Statement ; up:source unirule:MF_01322 ; rdf:subject ?pfs90 ; rdf:predicate up:annotation ; rdf:object ?annotation91 . _:474542 a rdf:Statement ; up:attribution _:474495 ; rdf:subject ?pfs90 ; rdf:predicate up:annotation ; rdf:object ?annotation91 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01322 #Rule MF_01322 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-03-21 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01322 . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1117 . })) . BIND(URI(CONCAT(STR(?this), '#MF_01322a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01322a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01322a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_01322a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01322a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01322a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01322a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch100 faldo:location ?templateMotifSequenceMatchRegionP0A8T7101 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8T7103 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A8T7MF_0132296 . ?templateMotifSequenceMatchRegionP0A8T7101 faldo:begin ?templateMotifSequenceMatchBeginP0A8T7102 . ?templateMotifSequenceMatchBeginP0A8T7102 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8T797 ; faldo:reference isoform:P0A8T7-1 . ?templateMotifSequenceProfileAlignmentOperationP0A8T7103 edam:has_input signature:MF_01322 ; rdf:type edam:operation_0300 . ?targetMotifMatch104 faldo:location ?targetMotifMatchRegionMatch105 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01322107 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A8T7MF_0132298 . ?targetMotifMatchRegionMatch105 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01322106 . ?targetMotifMatchRegionMatchBeginMF_01322106 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0132299 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01322107 edam:has_input signature:MF_01322 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_2) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8T7MF_0132296, 1, (STRLEN(?templateMotifCigarP0A8T7MF_0132296) - STRLEN(REPLACE(?templateMotifCigarP0A8T7MF_0132296, CONCAT('^(?:-*[^-]){', STR(((460 - ?templateMotifSequenceMatchBeginPositionP0A8T797) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8T7MF_0132298, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_0132298) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_0132298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8T7MF_0132298, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_0132298) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_0132298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) . BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0132299) - 1) AS ?thisPositionOn19) . BIND(?thisPositionOn19 AS ?thisPositionOn20) . BIND(?this AS ?pfs1t110) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'D')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8T7MF_0132296, 1, (STRLEN(?templateMotifCigarP0A8T7MF_0132296) - STRLEN(REPLACE(?templateMotifCigarP0A8T7MF_0132296, CONCAT('^(?:-*[^-]){', STR(((462 - ?templateMotifSequenceMatchBeginPositionP0A8T797) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8T7MF_0132298, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_0132298) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_0132298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8T7MF_0132298, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_0132298) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_0132298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) . BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_0132299) - 1) AS ?thisPositionOn25) . BIND(?thisPositionOn25 AS ?thisPositionOn26) . BIND(?this AS ?pfs1t113) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'D')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8T7MF_0132296, 1, (STRLEN(?templateMotifCigarP0A8T7MF_0132296) - STRLEN(REPLACE(?templateMotifCigarP0A8T7MF_0132296, CONCAT('^(?:-*[^-]){', STR(((464 - ?templateMotifSequenceMatchBeginPositionP0A8T797) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8T7MF_0132298, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_0132298) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_0132298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8T7MF_0132298, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_0132298) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_0132298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) . BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_0132299) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs1t116) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'D')) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP0A8T7122 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8T7124 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A8T7MF_01322117 . ?templateMotifSequenceMatchRegionP0A8T7122 faldo:begin ?templateMotifSequenceMatchBeginP0A8T7123 . ?templateMotifSequenceMatchBeginP0A8T7123 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8T7118 ; faldo:reference isoform:P0A8T7-1 . ?templateMotifSequenceProfileAlignmentOperationP0A8T7124 edam:has_input signature:MF_01322 ; rdf:type edam:operation_0300 . ?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01322128 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A8T7MF_01322119 . ?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01322127 . ?targetMotifMatchRegionMatchBeginMF_01322127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01322120 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01322128 edam:has_input signature:MF_01322 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFT_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8T7MF_01322117, 1, (STRLEN(?templateMotifCigarP0A8T7MF_01322117) - STRLEN(REPLACE(?templateMotifCigarP0A8T7MF_01322117, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionP0A8T7118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322119, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322119) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322119, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322119) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) . BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01322120) - 1) AS ?thisPositionOn38) . BIND(?thisPositionOn38 AS ?thisPositionOn39) . BIND(?this AS ?pfs2t131) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'C')) . BIND(?this AS ?pfs33) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionP0A8T7137 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8T7139 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A8T7MF_01322132 . ?templateMotifSequenceMatchRegionP0A8T7137 faldo:begin ?templateMotifSequenceMatchBeginP0A8T7138 . ?templateMotifSequenceMatchBeginP0A8T7138 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8T7133 ; faldo:reference isoform:P0A8T7-1 . ?templateMotifSequenceProfileAlignmentOperationP0A8T7139 edam:has_input signature:MF_01322 ; rdf:type edam:operation_0300 . ?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01322143 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A8T7MF_01322134 . ?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01322142 . ?targetMotifMatchRegionMatchBeginMF_01322142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01322135 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01322143 edam:has_input signature:MF_01322 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_3) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8T7MF_01322132, 1, (STRLEN(?templateMotifCigarP0A8T7MF_01322132) - STRLEN(REPLACE(?templateMotifCigarP0A8T7MF_01322132, CONCAT('^(?:-*[^-]){', STR(((814 - ?templateMotifSequenceMatchBeginPositionP0A8T7133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322134, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322134, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) . BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_01322135) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs3t146) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8T7MF_01322132, 1, (STRLEN(?templateMotifCigarP0A8T7MF_01322132) - STRLEN(REPLACE(?templateMotifCigarP0A8T7MF_01322132, CONCAT('^(?:-*[^-]){', STR(((888 - ?templateMotifSequenceMatchBeginPositionP0A8T7133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322134, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322134, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) . BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_01322135) - 1) AS ?thisPositionOn51) . BIND(?thisPositionOn51 AS ?thisPositionOn52) . BIND(?this AS ?pfs3t149) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8T7MF_01322132, 1, (STRLEN(?templateMotifCigarP0A8T7MF_01322132) - STRLEN(REPLACE(?templateMotifCigarP0A8T7MF_01322132, CONCAT('^(?:-*[^-]){', STR(((895 - ?templateMotifSequenceMatchBeginPositionP0A8T7133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322134, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322134, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) . BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_01322135) - 1) AS ?thisPositionOn57) . BIND(?thisPositionOn57 AS ?thisPositionOn58) . BIND(?this AS ?pfs3t152) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8T7MF_01322132, 1, (STRLEN(?templateMotifCigarP0A8T7MF_01322132) - STRLEN(REPLACE(?templateMotifCigarP0A8T7MF_01322132, CONCAT('^(?:-*[^-]){', STR(((898 - ?templateMotifSequenceMatchBeginPositionP0A8T7133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322134, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322134, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) . BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_01322135) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs3t155) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'C')) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionP0A8T7161 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8T7163 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A8T7MF_01322156 . ?templateMotifSequenceMatchRegionP0A8T7161 faldo:begin ?templateMotifSequenceMatchBeginP0A8T7162 . ?templateMotifSequenceMatchBeginP0A8T7162 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8T7157 ; faldo:reference isoform:P0A8T7-1 . ?templateMotifSequenceProfileAlignmentOperationP0A8T7163 edam:has_input signature:MF_01322 ; rdf:type edam:operation_0300 . ?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01322167 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A8T7MF_01322158 . ?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01322166 . ?targetMotifMatchRegionMatchBeginMF_01322166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01322159 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01322167 edam:has_input signature:MF_01322 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8T7MF_01322156, 1, (STRLEN(?templateMotifCigarP0A8T7MF_01322156) - STRLEN(REPLACE(?templateMotifCigarP0A8T7MF_01322156, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionP0A8T7157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322158, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322158) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322158, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322158) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) . BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_01322159) - 1) AS ?thisPositionOn70) . BIND(?thisPositionOn70 AS ?thisPositionOn71) . BIND(?this AS ?pfs4t170) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8T7MF_01322156, 1, (STRLEN(?templateMotifCigarP0A8T7MF_01322156) - STRLEN(REPLACE(?templateMotifCigarP0A8T7MF_01322156, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionP0A8T7157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322158, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322158) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322158, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322158) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) . BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_01322159) - 1) AS ?thisPositionOn76) . BIND(?thisPositionOn76 AS ?thisPositionOn77) . BIND(?this AS ?pfs4t173) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8T7MF_01322156, 1, (STRLEN(?templateMotifCigarP0A8T7MF_01322156) - STRLEN(REPLACE(?templateMotifCigarP0A8T7MF_01322156, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionP0A8T7157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322158, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322158) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322158, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322158) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) . BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_01322159) - 1) AS ?thisPositionOn82) . BIND(?thisPositionOn82 AS ?thisPositionOn83) . BIND(?this AS ?pfs4t176) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8T7MF_01322156, 1, (STRLEN(?templateMotifCigarP0A8T7MF_01322156) - STRLEN(REPLACE(?templateMotifCigarP0A8T7MF_01322156, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionP0A8T7157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322158, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322158) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322158, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322158) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) . BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_01322159) - 1) AS ?thisPositionOn88) . BIND(?thisPositionOn88 AS ?thisPositionOn89) . BIND(?this AS ?pfs4t179) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb85) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse86) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1) = 'C')) . BIND(?this AS ?pfs65) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch185 faldo:location ?templateMotifSequenceMatchRegionP0A8T7186 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8T7188 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A8T7MF_01322181 . ?templateMotifSequenceMatchRegionP0A8T7186 faldo:begin ?templateMotifSequenceMatchBeginP0A8T7187 . ?templateMotifSequenceMatchBeginP0A8T7187 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8T7182 ; faldo:reference isoform:P0A8T7-1 . ?templateMotifSequenceProfileAlignmentOperationP0A8T7188 edam:has_input signature:MF_01322 ; rdf:type edam:operation_0300 . ?targetMotifMatch189 faldo:location ?targetMotifMatchRegionMatch190 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01322192 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A8T7MF_01322183 . ?targetMotifMatchRegionMatch190 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01322191 . ?targetMotifMatchRegionMatchBeginMF_01322191 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01322184 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01322192 edam:has_input signature:MF_01322 ; rdf:type edam:operation_0300 . VALUES ?supertaxon180 {taxon:561 taxon:620} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon180 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8T7MF_01322181, 1, (STRLEN(?templateMotifCigarP0A8T7MF_01322181) - STRLEN(REPLACE(?templateMotifCigarP0A8T7MF_01322181, CONCAT('^(?:-*[^-]){', STR(((983 - ?templateMotifSequenceMatchBeginPositionP0A8T7182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322183, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322183) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8T7MF_01322183, 1, (STRLEN(?targetMotifMatchCigarP0A8T7MF_01322183) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8T7MF_01322183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) . BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_01322184) - 1) AS ?thisPositionOn94) . BIND(?thisPositionOn94 AS ?thisPositionOn95) . BIND(?this AS ?pfs5t195) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb92) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse93) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01322a91')) AS ?annotation91) . BIND(?this AS ?pfs90) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag196) . } BIND(IF(BOUND(?tagFTGRP_2), ?caseWithTag196, ?UNBOUND_VARIABLE) AS ?case9) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag197) . } BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_3)), ?caseWithTag197, ?UNBOUND_VARIABLE) AS ?case10) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag198) . } BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_3)), ?caseWithTag198, ?UNBOUND_VARIABLE) AS ?case11) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag199) . } BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2) || BOUND(?tagFTGRP_3)), ?caseWithTag199, ?UNBOUND_VARIABLE) AS ?case12) . OPTIONAL { ?this a up:Protein . { ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:561 . } UNION { ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:620 . } BIND(?this AS ?caseWithTag200) . } BIND(IF(BOUND(?tagFT_1), ?caseWithTag200, ?UNBOUND_VARIABLE) AS ?case13) . }