CONSTRUCT { _:490228 up:source unirule:MF_01379 . _:490229 up:source unirule:MF_01379 . _:490230 up:source unirule:MF_01379 . _:490231 up:source unirule:MF_01379 . _:490232 up:source unirule:MF_01379 . _:490233 up:source unirule:MF_01379 . _:490234 up:source unirule:MF_01379 . _:490235 up:source unirule:MF_01379 . _:490236 up:source unirule:MF_01379 . _:490237 up:source unirule:MF_01379 . _:490238 up:source unirule:MF_01379 . _:490239 up:source unirule:MF_01379 . _:490240 up:source unirule:MF_01379 . _:490241 up:source unirule:MF_01379 . _:490242 up:source unirule:MF_01379 . _:490243 up:source unirule:MF_01379 . _:490244 up:source unirule:MF_01379 . _:490245 up:source unirule:MF_01379 . _:490246 up:source unirule:MF_01379 . _:490247 up:source unirule:MF_01379 . _:490248 up:source unirule:MF_01379 . _:490249 up:source unirule:MF_01379 . _:490250 up:source unirule:MF_01379 . _:490251 up:source unirule:MF_01379 . _:490252 up:source unirule:MF_01379 . _:490253 up:source unirule:MF_01379 . _:490254 up:source unirule:MF_01379 . _:490255 up:source unirule:MF_01379 . _:490256 up:source unirule:MF_01379 . _:490257 up:source unirule:MF_01379 . _:490258 up:source unirule:MF_01379 . _:490259 up:source unirule:MF_01379 . _:490260 up:source unirule:MF_01379 . _:490261 up:source unirule:MF_01379 . _:490262 up:source unirule:MF_01379 . _:490263 up:source unirule:MF_01379 . _:490264 up:source unirule:MF_01379 . _:490265 up:source unirule:MF_01379 . _:490266 up:source unirule:MF_01379 . _:490267 up:source unirule:MF_01379 . _:490268 up:source unirule:MF_01379 . _:490269 up:source unirule:MF_01379 . _:490270 up:source unirule:MF_01379 . _:490271 up:source unirule:MF_01379 . _:490272 up:source unirule:MF_01379 . _:490273 up:source unirule:MF_01379 . _:490274 up:source unirule:MF_01379 . _:490275 up:source unirule:MF_01379 . _:490276 up:source unirule:MF_01379 . _:490277 up:source unirule:MF_01379 . _:490278 up:source unirule:MF_01379 . _:490279 up:source unirule:MF_01379 . _:490280 up:source unirule:MF_01379 . _:490281 up:source unirule:MF_01379 . _:490282 up:source unirule:MF_01379 . _:490283 up:source unirule:MF_01379 . _:490284 up:source unirule:MF_01379 . _:490285 up:source unirule:MF_01379 . _:490286 up:source unirule:MF_01379 . _:490287 up:source unirule:MF_01379 . _:490288 up:source unirule:MF_01379 . _:490289 up:source unirule:MF_01379 . _:490290 up:source unirule:MF_01379 . _:490291 up:source unirule:MF_01379 . _:490292 up:source unirule:MF_01379 . _:490293 up:source unirule:MF_01379 . _:490294 up:source unirule:MF_01379 . _:490295 up:source unirule:MF_01379 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 , ?annotation8 , ?annotation9 , ?annotation10 ; up:classifiedWith GO:0005506 , GO:0009055 , GO:0015979 , GO:0016168 , GO:0016682 , keyword:106 , keyword:1133 , keyword:148 , keyword:157 , keyword:249 , keyword:359 , keyword:408 , keyword:460 , keyword:464 , keyword:472 , keyword:479 , keyword:560 , keyword:602 , keyword:604 , keyword:812 , keyword:813 ; up:recommendedName ?name0 . ?name0 up:ecName '1.10.3.9' ; up:fullName 'Photosystem II protein D1' ; up:shortName 'PSII D1 protein' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Photosystem II Q(B) protein' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'psbA' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbD) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/36359>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.10.3.9>. ?annotation6 a up:Cofactor_Annotation ; rdfs:comment 'The D1/D2 heterodimer binds P680, chlorophylls that are the primary electron donor of PSII, and subsequent electron acceptors. It shares a non-heme iron and each subunit binds pheophytin, quinone, additional chlorophylls, carotenoids and lipids. D1 provides most of the ligands for the Mn4-Ca-O5 cluster of the oxygen-evolving complex (OEC). There is also a Cl(-1) ion associated with D1 and D2, which is required for oxygen evolution. The PSII complex binds additional chlorophylls, carotenoids and specific lipids.' . ?annotation7 a up:PTM_Annotation ; rdfs:comment '@RESIDUE_NAME_AT_POS|Tyr|161|@ forms a radical intermediate that is referred to as redox-active TyrZ, YZ or Y-Z.' . ?annotation8 a up:Annotation ; rdfs:comment '2 of the reaction center chlorophylls (ChlD1 and ChlD2) are entirely coordinated by water.' . ?annotation9 a up:Annotation ; rdfs:comment 'Herbicides such as atrazine, BNT, diuron or ioxynil bind in the Q(B) binding site and block subsequent electron transfer.' . ?annotation10 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the reaction center PufL/M/PsbA/D family.' . ?case11 up:classifiedWith keyword:7 . ?case12 up:classifiedWith keyword:597 . ?case14 up:classifiedWith GO:0009535 . ?case15 up:classifiedWith keyword:1003 , keyword:997 . ?case17 up:classifiedWith keyword:793 . ?case19 up:classifiedWith GO:0005886 . ?case20 up:classifiedWith GO:0042651 . ?pfs21 up:annotation ?annotation22 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; rdf:type up:Site_Annotation ; rdfs:comment 'Cleavage; by CtpA' . ?pfsb23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfs27 up:annotation ?annotation28 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphothreonine' . ?pfsb29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfs33 up:annotation ?annotation34 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N-acetylthreonine' . ?pfsb35 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfs39 up:annotation ?annotation40 . ?annotation40 faldo:begin ?pfsb41 ; faldo:end ?pfse42 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb41 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfse42 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfs45 up:annotation ?annotation46 . ?annotation46 faldo:begin ?pfsb47 ; faldo:end ?pfse48 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb47 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse48 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb53 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfs57 up:annotation ?annotation58 . ?annotation58 faldo:begin ?pfsb59 ; faldo:end ?pfse60 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb59 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?pfse60 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?pfs63 up:annotation ?annotation64 . ?annotation64 faldo:begin ?pfsb65 ; faldo:end ?pfse66 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb65 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfse66 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?pfs69 up:annotation ?annotation70 . ?annotation70 faldo:begin ?pfsb71 ; faldo:end ?pfse72 ; up:ligand ?ligand73 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'axial binding residue' . ?pfsb71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?pfse72 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?ligand73 up:ligandPart ?ligand73 ; rdfs:subClassOf chebi:25107 , chebi:58416 . ?pfs76 up:annotation ?annotation77 . ?annotation77 faldo:begin ?pfsb78 ; faldo:end ?pfse79 ; up:ligand ?ligand80 ; rdf:type up:Binding_Site_Annotation . ?pfsb78 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . ?pfse79 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?ligand80 rdfs:subClassOf chebi:189552 . ?pfs83 up:annotation ?annotation84 . ?annotation84 faldo:begin ?pfsb85 ; faldo:end ?pfse86 ; up:ligand ?ligand87 ; rdf:type up:Binding_Site_Annotation . ?pfsb85 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . ?pfse86 faldo:position ?thisPositionOn89 ; rdf:type faldo:ExactPosition . ?ligand87 rdfs:subClassOf chebi:189552 . ?pfs90 up:annotation ?annotation91 . ?annotation91 faldo:begin ?pfsb92 ; faldo:end ?pfse93 ; up:ligand ?ligand94 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'axial binding residue' . ?pfsb92 faldo:position ?thisPositionOn95 ; rdf:type faldo:ExactPosition . ?pfse93 faldo:position ?thisPositionOn96 ; rdf:type faldo:ExactPosition . ?ligand94 up:ligandPart ?ligand94 ; rdfs:subClassOf chebi:25107 , chebi:58416 . ?pfs97 up:annotation ?annotation98 . ?annotation98 faldo:begin ?pfsb99 ; faldo:end ?pfse100 ; up:ligand ?ligand101 ; rdf:type up:Binding_Site_Annotation . ?pfsb99 faldo:position ?thisPositionOn102 ; rdf:type faldo:ExactPosition . ?pfse100 faldo:position ?thisPositionOn103 ; rdf:type faldo:ExactPosition . ?ligand101 rdfs:subClassOf chebi:24875 . ?pfs104 up:annotation ?annotation105 . ?annotation105 faldo:begin ?pfsb106 ; faldo:end ?pfse107 ; up:ligand ?ligand108 ; rdf:type up:Binding_Site_Annotation . ?pfsb106 faldo:position ?thisPositionOn109 ; rdf:type faldo:ExactPosition . ?pfse107 faldo:position ?thisPositionOn110 ; rdf:type faldo:ExactPosition . ?ligand108 rdfs:subClassOf chebi:24875 . ?pfs111 up:annotation ?annotation112 . ?annotation112 faldo:begin ?pfsb113 ; faldo:end ?pfse114 ; up:ligand ?ligand115 ; rdf:type up:Binding_Site_Annotation . ?pfsb113 faldo:position ?thisPositionOn116 ; rdf:type faldo:ExactPosition . ?pfse114 faldo:position ?thisPositionOn117 ; rdf:type faldo:ExactPosition . ?ligand115 rdfs:subClassOf chebi:189552 . ?pfs118 up:annotation ?annotation119 . ?annotation119 faldo:begin ?pfsb120 ; faldo:end ?pfse121 ; up:ligand ?ligand122 ; rdf:type up:Binding_Site_Annotation . ?pfsb120 faldo:position ?thisPositionOn123 ; rdf:type faldo:ExactPosition . ?pfse121 faldo:position ?thisPositionOn124 ; rdf:type faldo:ExactPosition . ?ligand122 rdfs:subClassOf chebi:189552 . ?pfs125 up:annotation ?annotation126 . ?annotation126 faldo:begin ?pfsb127 ; faldo:end ?pfse128 ; up:ligand ?ligand129 ; rdf:type up:Binding_Site_Annotation . ?pfsb127 faldo:position ?thisPositionOn130 ; rdf:type faldo:ExactPosition . ?pfse128 faldo:position ?thisPositionOn131 ; rdf:type faldo:ExactPosition . ?ligand129 rdfs:subClassOf chebi:189552 . ?pfs132 up:annotation ?annotation133 . ?annotation133 faldo:begin ?pfsb134 ; faldo:end ?pfse135 ; up:ligand ?ligand136 ; rdf:type up:Binding_Site_Annotation . ?pfsb134 faldo:position ?thisPositionOn137 ; rdf:type faldo:ExactPosition . ?pfse135 faldo:position ?thisPositionOn138 ; rdf:type faldo:ExactPosition . ?ligand136 rdfs:subClassOf chebi:189552 . ?pfs139 up:annotation ?annotation140 . ?annotation140 faldo:begin ?pfsb141 ; faldo:end ?pfse142 ; up:ligand ?ligand143 ; rdf:type up:Binding_Site_Annotation . ?pfsb141 faldo:position ?thisPositionOn144 ; rdf:type faldo:ExactPosition . ?pfse142 faldo:position ?thisPositionOn145 ; rdf:type faldo:ExactPosition . ?ligand143 rdfs:subClassOf chebi:136840 . ?pfs146 up:annotation ?annotation147 . ?annotation147 faldo:begin ?pfsb148 ; faldo:end ?pfse149 ; up:ligand ?ligand150 ; rdf:type up:Binding_Site_Annotation . ?pfsb148 faldo:position ?thisPositionOn151 ; rdf:type faldo:ExactPosition . ?pfse149 faldo:position ?thisPositionOn152 ; rdf:type faldo:ExactPosition . ?ligand150 rdfs:subClassOf chebi:132124 . ?pfs153 up:annotation ?annotation154 . ?annotation154 faldo:begin ?pfsb155 ; faldo:end ?pfse156 ; up:ligand ?ligand157 ; rdf:type up:Binding_Site_Annotation . ?pfsb155 faldo:position ?thisPositionOn158 ; rdf:type faldo:ExactPosition . ?pfse156 faldo:position ?thisPositionOn159 ; rdf:type faldo:ExactPosition . ?ligand157 rdfs:subClassOf chebi:132124 . ?pfs160 up:annotation ?annotation161 . ?annotation161 faldo:begin ?pfsb162 ; faldo:end ?pfse163 ; rdf:type up:Site_Annotation ; rdfs:comment 'Tyrosine radical intermediate' . ?pfsb162 faldo:position ?thisPositionOn164 ; rdf:type faldo:ExactPosition . ?pfse163 faldo:position ?thisPositionOn165 ; rdf:type faldo:ExactPosition . ?pfs166 up:annotation ?annotation167 . ?annotation167 faldo:begin ?pfsb168 ; faldo:end ?pfse169 ; rdf:type up:Site_Annotation ; rdfs:comment 'Stabilizes free radical intermediate' . ?pfsb168 faldo:position ?thisPositionOn170 ; rdf:type faldo:ExactPosition . ?pfse169 faldo:position ?thisPositionOn171 ; rdf:type faldo:ExactPosition . ?pfs172 up:annotation ?annotation173 . ?annotation173 faldo:begin ?pfsb174 ; faldo:end ?pfse175 ; rdf:type up:Chain_Annotation ; rdfs:comment 'Photosystem II protein D1' . ?pfsb174 faldo:position ?thisPositionOn176 ; rdf:type faldo:ExactPosition . ?pfse175 faldo:position ?thisPositionOn177 ; rdf:type faldo:ExactPosition . ?pfs178 up:annotation ?annotation179 . ?annotation179 faldo:begin ?pfsb180 ; faldo:end ?pfse181 ; rdf:type up:Propeptide_Annotation . ?pfsb180 faldo:position ?thisPositionOn182 ; rdf:type faldo:ExactPosition . ?pfse181 faldo:position ?thisPositionOn183 ; rdf:type faldo:ExactPosition . ?pfs184 up:annotation ?annotation185 . ?annotation185 faldo:begin ?pfsb186 ; faldo:end ?pfse187 ; rdf:type up:Chain_Annotation ; rdfs:comment 'Photosystem II protein D1' . ?pfsb186 faldo:position ?thisPositionOn188 ; rdf:type faldo:ExactPosition . ?pfse187 faldo:position ?thisPositionOn189 ; rdf:type faldo:ExactPosition . ?pfs190 up:annotation ?annotation191 . ?annotation191 faldo:begin ?pfsb192 ; faldo:end ?pfse193 ; rdf:type up:Chain_Annotation ; rdfs:comment 'Photosystem II protein D1' . ?pfsb192 faldo:position ?thisPositionOn194 ; rdf:type faldo:ExactPosition . ?pfse193 faldo:position ?thisPositionOn195 ; rdf:type faldo:ExactPosition . ?pfs196 up:annotation ?annotation197 . ?annotation197 faldo:begin ?pfsb198 ; faldo:end ?pfse199 ; rdf:type up:Propeptide_Annotation . ?pfsb198 faldo:position ?thisPositionOn200 ; rdf:type faldo:ExactPosition . ?pfse199 faldo:position ?thisPositionOn201 ; rdf:type faldo:ExactPosition . ?pfs202 up:annotation ?annotation203 . ?annotation203 faldo:begin ?pfsb204 ; faldo:end ?pfse205 ; rdf:type up:Initiator_Methionine_Annotation ; rdfs:comment 'Removed' . ?pfsb204 faldo:position ?thisPositionOn206 ; rdf:type faldo:ExactPosition . ?pfse205 faldo:position ?thisPositionOn207 ; rdf:type faldo:ExactPosition . _:490296 a rdf:Statement ; up:attribution _:490228 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:490297 a rdf:Statement ; up:attribution _:490229 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:490298 a rdf:Statement ; up:attribution _:490230 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:490299 a rdf:Statement ; up:attribution _:490231 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:490300 a rdf:Statement ; up:attribution _:490232 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:490301 a rdf:Statement ; up:attribution _:490233 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:490302 a rdf:Statement ; up:attribution _:490234 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:490303 a rdf:Statement ; up:attribution _:490235 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:490304 a rdf:Statement ; up:attribution _:490236 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:490305 a rdf:Statement ; up:attribution _:490237 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:490306 a rdf:Statement ; up:attribution _:490238 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:106 . _:490307 a rdf:Statement ; up:attribution _:490239 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:148 . _:490308 a rdf:Statement ; up:attribution _:490240 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:157 . _:490309 a rdf:Statement ; up:attribution _:490241 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:249 . _:490310 a rdf:Statement ; up:attribution _:490242 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:359 . _:490311 a rdf:Statement ; up:attribution _:490243 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:490312 a rdf:Statement ; up:attribution _:490244 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:464 . _:490313 a rdf:Statement ; up:attribution _:490245 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:490314 a rdf:Statement ; up:attribution _:490246 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:490315 a rdf:Statement ; up:attribution _:490247 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:490316 a rdf:Statement ; up:attribution _:490248 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:490317 a rdf:Statement ; up:attribution _:490249 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:602 . _:490318 a rdf:Statement ; up:attribution _:490250 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:604 . _:490319 a rdf:Statement ; up:attribution _:490251 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:490320 a rdf:Statement ; up:attribution _:490252 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:813 . _:490321 a rdf:Statement ; up:attribution _:490253 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . _:490322 a rdf:Statement ; up:attribution _:490254 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016168 . _:490323 a rdf:Statement ; up:attribution _:490255 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009055 . _:490324 a rdf:Statement ; up:attribution _:490256 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005506 . _:490325 a rdf:Statement ; up:attribution _:490257 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0015979 . _:490326 a rdf:Statement ; up:attribution _:490258 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016682 . _:490327 a rdf:Statement ; up:attribution _:490259 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object keyword:7 . _:490328 a rdf:Statement ; up:attribution _:490260 ; rdf:subject ?case12 ; rdf:predicate up:classifiedWith ; rdf:object keyword:597 . _:490329 a rdf:Statement ; up:attribution _:490261 ; rdf:subject ?case14 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009535 . _:490330 a rdf:Statement ; up:attribution _:490262 ; rdf:subject ?case15 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1003 . _:490331 a rdf:Statement ; up:attribution _:490263 ; rdf:subject ?case15 ; rdf:predicate up:classifiedWith ; rdf:object keyword:997 . _:490332 a rdf:Statement ; up:attribution _:490264 ; rdf:subject ?case17 ; rdf:predicate up:classifiedWith ; rdf:object keyword:793 . _:490333 a rdf:Statement ; up:attribution _:490265 ; rdf:subject ?case19 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005886 . _:490334 a rdf:Statement ; up:attribution _:490266 ; rdf:subject ?case20 ; rdf:predicate up:classifiedWith ; rdf:object GO:0042651 . _:490335 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:490336 a rdf:Statement ; up:attribution _:490267 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:490337 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:490338 a rdf:Statement ; up:attribution _:490268 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:490339 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:490340 a rdf:Statement ; up:attribution _:490269 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:490341 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:490342 a rdf:Statement ; up:attribution _:490270 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:490343 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:490344 a rdf:Statement ; up:attribution _:490271 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:490345 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:490346 a rdf:Statement ; up:attribution _:490272 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:490347 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:490348 a rdf:Statement ; up:attribution _:490273 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:490349 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:490350 a rdf:Statement ; up:attribution _:490274 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:490351 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . _:490352 a rdf:Statement ; up:attribution _:490275 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . _:490353 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs76 ; rdf:predicate up:annotation ; rdf:object ?annotation77 . _:490354 a rdf:Statement ; up:attribution _:490276 ; rdf:subject ?pfs76 ; rdf:predicate up:annotation ; rdf:object ?annotation77 . _:490355 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs83 ; rdf:predicate up:annotation ; rdf:object ?annotation84 . _:490356 a rdf:Statement ; up:attribution _:490277 ; rdf:subject ?pfs83 ; rdf:predicate up:annotation ; rdf:object ?annotation84 . _:490357 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs90 ; rdf:predicate up:annotation ; rdf:object ?annotation91 . _:490358 a rdf:Statement ; up:attribution _:490278 ; rdf:subject ?pfs90 ; rdf:predicate up:annotation ; rdf:object ?annotation91 . _:490359 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs97 ; rdf:predicate up:annotation ; rdf:object ?annotation98 . _:490360 a rdf:Statement ; up:attribution _:490279 ; rdf:subject ?pfs97 ; rdf:predicate up:annotation ; rdf:object ?annotation98 . _:490361 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs104 ; rdf:predicate up:annotation ; rdf:object ?annotation105 . _:490362 a rdf:Statement ; up:attribution _:490280 ; rdf:subject ?pfs104 ; rdf:predicate up:annotation ; rdf:object ?annotation105 . _:490363 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs111 ; rdf:predicate up:annotation ; rdf:object ?annotation112 . _:490364 a rdf:Statement ; up:attribution _:490281 ; rdf:subject ?pfs111 ; rdf:predicate up:annotation ; rdf:object ?annotation112 . _:490365 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs118 ; rdf:predicate up:annotation ; rdf:object ?annotation119 . _:490366 a rdf:Statement ; up:attribution _:490282 ; rdf:subject ?pfs118 ; rdf:predicate up:annotation ; rdf:object ?annotation119 . _:490367 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs125 ; rdf:predicate up:annotation ; rdf:object ?annotation126 . _:490368 a rdf:Statement ; up:attribution _:490283 ; rdf:subject ?pfs125 ; rdf:predicate up:annotation ; rdf:object ?annotation126 . _:490369 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs132 ; rdf:predicate up:annotation ; rdf:object ?annotation133 . _:490370 a rdf:Statement ; up:attribution _:490284 ; rdf:subject ?pfs132 ; rdf:predicate up:annotation ; rdf:object ?annotation133 . _:490371 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs139 ; rdf:predicate up:annotation ; rdf:object ?annotation140 . _:490372 a rdf:Statement ; up:attribution _:490285 ; rdf:subject ?pfs139 ; rdf:predicate up:annotation ; rdf:object ?annotation140 . _:490373 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs146 ; rdf:predicate up:annotation ; rdf:object ?annotation147 . _:490374 a rdf:Statement ; up:attribution _:490286 ; rdf:subject ?pfs146 ; rdf:predicate up:annotation ; rdf:object ?annotation147 . _:490375 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs153 ; rdf:predicate up:annotation ; rdf:object ?annotation154 . _:490376 a rdf:Statement ; up:attribution _:490287 ; rdf:subject ?pfs153 ; rdf:predicate up:annotation ; rdf:object ?annotation154 . _:490377 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs160 ; rdf:predicate up:annotation ; rdf:object ?annotation161 . _:490378 a rdf:Statement ; up:attribution _:490288 ; rdf:subject ?pfs160 ; rdf:predicate up:annotation ; rdf:object ?annotation161 . _:490379 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs166 ; rdf:predicate up:annotation ; rdf:object ?annotation167 . _:490380 a rdf:Statement ; up:attribution _:490289 ; rdf:subject ?pfs166 ; rdf:predicate up:annotation ; rdf:object ?annotation167 . _:490381 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs172 ; rdf:predicate up:annotation ; rdf:object ?annotation173 . _:490382 a rdf:Statement ; up:attribution _:490290 ; rdf:subject ?pfs172 ; rdf:predicate up:annotation ; rdf:object ?annotation173 . _:490383 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs178 ; rdf:predicate up:annotation ; rdf:object ?annotation179 . _:490384 a rdf:Statement ; up:attribution _:490291 ; rdf:subject ?pfs178 ; rdf:predicate up:annotation ; rdf:object ?annotation179 . _:490385 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs184 ; rdf:predicate up:annotation ; rdf:object ?annotation185 . _:490386 a rdf:Statement ; up:attribution _:490292 ; rdf:subject ?pfs184 ; rdf:predicate up:annotation ; rdf:object ?annotation185 . _:490387 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs190 ; rdf:predicate up:annotation ; rdf:object ?annotation191 . _:490388 a rdf:Statement ; up:attribution _:490293 ; rdf:subject ?pfs190 ; rdf:predicate up:annotation ; rdf:object ?annotation191 . _:490389 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs196 ; rdf:predicate up:annotation ; rdf:object ?annotation197 . _:490390 a rdf:Statement ; up:attribution _:490294 ; rdf:subject ?pfs196 ; rdf:predicate up:annotation ; rdf:object ?annotation197 . _:490391 a rdf:Statement ; up:source unirule:MF_01379 ; rdf:subject ?pfs202 ; rdf:predicate up:annotation ; rdf:object ?annotation203 . _:490392 a rdf:Statement ; up:attribution _:490295 ; rdf:subject ?pfs202 ; rdf:predicate up:annotation ; rdf:object ?annotation203 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01379 #Rule MF_01379 Created by:auchin on:2007-12-18 Modified by:aauchinc on:2023-06-20 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01379 . ?thisOrganism rdfs:subClassOf+ taxon:1117 . } UNION { ?this rdfs:seeAlso signature:MF_01379 . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } UNION { ?this up:encodedIn up:Cyanelle . } UNION { ?this up:encodedIn up:Apicoplast . } UNION { ?this up:encodedIn up:Organellar_chromatophore . } UNION { ?this up:encodedIn up:Non-photosynthetic_plastid . } } BIND(URI(CONCAT(STR(?this), '#MF_01379a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01379a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01379a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01379a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01379a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01379a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01379a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_01379a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_01379a10')) AS ?annotation10) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch212 faldo:location ?templateMotifSequenceMatchRegionP51765213 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765215 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379208 . ?templateMotifSequenceMatchRegionP51765213 faldo:begin ?templateMotifSequenceMatchBeginP51765214 . ?templateMotifSequenceMatchBeginP51765214 faldo:position ?templateMotifSequenceMatchBeginPositionP51765209 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765215 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch216 faldo:location ?targetMotifMatchRegionMatch217 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379219 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379210 . ?targetMotifMatchRegionMatch217 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379218 . ?targetMotifMatchRegionMatchBeginMF_01379218 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379211 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379219 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagCleavage) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379208, 1, (STRLEN(?templateMotifCigarP51765MF_01379208) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379208, CONCAT('^(?:-*[^-]){', STR(((344 - ?templateMotifSequenceMatchBeginPositionP51765209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379210, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379210) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379210, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379210) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) . BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_01379211) - 1) AS ?thisPositionOn25) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379208, 1, (STRLEN(?templateMotifCigarP51765MF_01379208) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379208, CONCAT('^(?:-*[^-]){', STR(((345 - ?templateMotifSequenceMatchBeginPositionP51765209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379210, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379210) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379210, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379210) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) . BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_01379211) - 1) AS ?thisPositionOn26) . BIND(?this AS ?pfs1t224) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) . FILTER (REGEX('A[ACDGSTV]', SUBSTR(?thisSequenceValue, ?thisPositionOn25, (?thisPositionOn26 - ?thisPositionOn25)))) . BIND(URI(CONCAT(STR(?this), '#MF_01379a22')) AS ?annotation22) . BIND(?this AS ?pfs21) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch229 faldo:location ?templateMotifSequenceMatchRegionP51765230 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765232 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379225 . ?templateMotifSequenceMatchRegionP51765230 faldo:begin ?templateMotifSequenceMatchBeginP51765231 . ?templateMotifSequenceMatchBeginP51765231 faldo:position ?templateMotifSequenceMatchBeginPositionP51765226 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765232 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch233 faldo:location ?targetMotifMatchRegionMatch234 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379236 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379227 . ?targetMotifMatchRegionMatch234 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379235 . ?targetMotifMatchRegionMatchBeginMF_01379235 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379228 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379236 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagphospho) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33090 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379225, 1, (STRLEN(?templateMotifCigarP51765MF_01379225) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379225, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP51765226) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1237) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379227, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379227) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379227, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379227) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), '')))), '[^-]', ''))) AS ?step2238) . BIND(((?step2238 + ?targetMotifMatchRegionMatchBeginPositionMF_01379228) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs2t239) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_01379a28')) AS ?annotation28) . BIND(?this AS ?pfs27) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch244 faldo:location ?templateMotifSequenceMatchRegionP51765245 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765247 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379240 . ?templateMotifSequenceMatchRegionP51765245 faldo:begin ?templateMotifSequenceMatchBeginP51765246 . ?templateMotifSequenceMatchBeginP51765246 faldo:position ?templateMotifSequenceMatchBeginPositionP51765241 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765247 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch248 faldo:location ?targetMotifMatchRegionMatch249 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379251 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379242 . ?targetMotifMatchRegionMatch249 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379250 . ?targetMotifMatchRegionMatchBeginMF_01379250 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379243 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379251 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagacetyl) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33090 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379240, 1, (STRLEN(?templateMotifCigarP51765MF_01379240) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379240, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP51765241) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1252) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379242, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379242) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379242, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379242) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), '')))), '[^-]', ''))) AS ?step2253) . BIND(((?step2253 + ?targetMotifMatchRegionMatchBeginPositionMF_01379243) - 1) AS ?thisPositionOn37) . BIND(?thisPositionOn37 AS ?thisPositionOn38) . BIND(?this AS ?pfs3t254) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_01379a34')) AS ?annotation34) . BIND(?this AS ?pfs33) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch259 faldo:location ?templateMotifSequenceMatchRegionP51765260 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765262 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379255 . ?templateMotifSequenceMatchRegionP51765260 faldo:begin ?templateMotifSequenceMatchBeginP51765261 . ?templateMotifSequenceMatchBeginP51765261 faldo:position ?templateMotifSequenceMatchBeginPositionP51765256 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765262 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch263 faldo:location ?targetMotifMatchRegionMatch264 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379266 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379257 . ?targetMotifMatchRegionMatch264 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379265 . ?targetMotifMatchRegionMatchBeginMF_01379265 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379258 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379266 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379255, 1, (STRLEN(?templateMotifCigarP51765MF_01379255) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379255, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionP51765256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1267) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379257, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379257) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379257, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379257) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), '')))), '[^-]', ''))) AS ?step2268) . BIND(((?step2268 + ?targetMotifMatchRegionMatchBeginPositionMF_01379258) - 1) AS ?thisPositionOn43) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379255, 1, (STRLEN(?templateMotifCigarP51765MF_01379255) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379255, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP51765256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1269) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379257, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379257) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1269), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379257, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379257) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1269), '}'), '')))), '[^-]', ''))) AS ?step2270) . BIND(((?step2270 + ?targetMotifMatchRegionMatchBeginPositionMF_01379258) - 1) AS ?thisPositionOn44) . BIND(?this AS ?pfs4t271) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb41) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse42) . FILTER ((BOUND(?thisPositionOn43) && BOUND(?thisPositionOn44))) . BIND(URI(CONCAT(STR(?this), '#MF_01379a40')) AS ?annotation40) . BIND(?this AS ?pfs39) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch276 faldo:location ?templateMotifSequenceMatchRegionP51765277 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765279 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379272 . ?templateMotifSequenceMatchRegionP51765277 faldo:begin ?templateMotifSequenceMatchBeginP51765278 . ?templateMotifSequenceMatchBeginP51765278 faldo:position ?templateMotifSequenceMatchBeginPositionP51765273 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765279 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch280 faldo:location ?targetMotifMatchRegionMatch281 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379283 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379274 . ?targetMotifMatchRegionMatch281 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379282 . ?targetMotifMatchRegionMatchBeginMF_01379282 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379275 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379283 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379272, 1, (STRLEN(?templateMotifCigarP51765MF_01379272) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379272, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionP51765273) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1284) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379274, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379274) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379274, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1284), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379274, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379274) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379274, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1284), '}'), '')))), '[^-]', ''))) AS ?step2285) . BIND(((?step2285 + ?targetMotifMatchRegionMatchBeginPositionMF_01379275) - 1) AS ?thisPositionOn49) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379272, 1, (STRLEN(?templateMotifCigarP51765MF_01379272) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379272, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP51765273) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1286) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379274, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379274) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379274, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379274, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379274) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379274, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), '')))), '[^-]', ''))) AS ?step2287) . BIND(((?step2287 + ?targetMotifMatchRegionMatchBeginPositionMF_01379275) - 1) AS ?thisPositionOn50) . BIND(?this AS ?pfs4t288) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb47) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse48) . FILTER ((BOUND(?thisPositionOn49) && BOUND(?thisPositionOn50))) . BIND(URI(CONCAT(STR(?this), '#MF_01379a46')) AS ?annotation46) . BIND(?this AS ?pfs45) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch293 faldo:location ?templateMotifSequenceMatchRegionP51765294 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765296 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379289 . ?templateMotifSequenceMatchRegionP51765294 faldo:begin ?templateMotifSequenceMatchBeginP51765295 . ?templateMotifSequenceMatchBeginP51765295 faldo:position ?templateMotifSequenceMatchBeginPositionP51765290 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765296 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch297 faldo:location ?targetMotifMatchRegionMatch298 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379300 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379291 . ?targetMotifMatchRegionMatch298 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379299 . ?targetMotifMatchRegionMatchBeginMF_01379299 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379292 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379300 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379289, 1, (STRLEN(?templateMotifCigarP51765MF_01379289) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379289, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionP51765290) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1301) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379291, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379291) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379291, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379291) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), '')))), '[^-]', ''))) AS ?step2302) . BIND(((?step2302 + ?targetMotifMatchRegionMatchBeginPositionMF_01379292) - 1) AS ?thisPositionOn55) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379289, 1, (STRLEN(?templateMotifCigarP51765MF_01379289) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379289, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP51765290) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1303) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379291, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379291) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1303), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379291, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379291) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1303), '}'), '')))), '[^-]', ''))) AS ?step2304) . BIND(((?step2304 + ?targetMotifMatchRegionMatchBeginPositionMF_01379292) - 1) AS ?thisPositionOn56) . BIND(?this AS ?pfs4t305) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse54) . FILTER ((BOUND(?thisPositionOn55) && BOUND(?thisPositionOn56))) . BIND(URI(CONCAT(STR(?this), '#MF_01379a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch310 faldo:location ?templateMotifSequenceMatchRegionP51765311 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765313 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379306 . ?templateMotifSequenceMatchRegionP51765311 faldo:begin ?templateMotifSequenceMatchBeginP51765312 . ?templateMotifSequenceMatchBeginP51765312 faldo:position ?templateMotifSequenceMatchBeginPositionP51765307 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765313 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch314 faldo:location ?targetMotifMatchRegionMatch315 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379317 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379308 . ?targetMotifMatchRegionMatch315 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379316 . ?targetMotifMatchRegionMatchBeginMF_01379316 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379309 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379317 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379306, 1, (STRLEN(?templateMotifCigarP51765MF_01379306) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379306, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP51765307) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1318) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379308, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379308) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1318), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379308, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379308) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1318), '}'), '')))), '[^-]', ''))) AS ?step2319) . BIND(((?step2319 + ?targetMotifMatchRegionMatchBeginPositionMF_01379309) - 1) AS ?thisPositionOn61) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379306, 1, (STRLEN(?templateMotifCigarP51765MF_01379306) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379306, CONCAT('^(?:-*[^-]){', STR(((218 - ?templateMotifSequenceMatchBeginPositionP51765307) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1320) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379308, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379308) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1320), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379308, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379308) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1320), '}'), '')))), '[^-]', ''))) AS ?step2321) . BIND(((?step2321 + ?targetMotifMatchRegionMatchBeginPositionMF_01379309) - 1) AS ?thisPositionOn62) . BIND(?this AS ?pfs4t322) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb59) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse60) . FILTER ((BOUND(?thisPositionOn61) && BOUND(?thisPositionOn62))) . BIND(URI(CONCAT(STR(?this), '#MF_01379a58')) AS ?annotation58) . BIND(?this AS ?pfs57) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch327 faldo:location ?templateMotifSequenceMatchRegionP51765328 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765330 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379323 . ?templateMotifSequenceMatchRegionP51765328 faldo:begin ?templateMotifSequenceMatchBeginP51765329 . ?templateMotifSequenceMatchBeginP51765329 faldo:position ?templateMotifSequenceMatchBeginPositionP51765324 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765330 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch331 faldo:location ?targetMotifMatchRegionMatch332 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379334 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379325 . ?targetMotifMatchRegionMatch332 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379333 . ?targetMotifMatchRegionMatchBeginMF_01379333 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379326 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379334 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379323, 1, (STRLEN(?templateMotifCigarP51765MF_01379323) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379323, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionP51765324) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1335) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379325, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379325) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1335), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379325, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379325) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1335), '}'), '')))), '[^-]', ''))) AS ?step2336) . BIND(((?step2336 + ?targetMotifMatchRegionMatchBeginPositionMF_01379326) - 1) AS ?thisPositionOn67) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379323, 1, (STRLEN(?templateMotifCigarP51765MF_01379323) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379323, CONCAT('^(?:-*[^-]){', STR(((288 - ?templateMotifSequenceMatchBeginPositionP51765324) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1337) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379325, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379325) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379325, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379325) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), '')))), '[^-]', ''))) AS ?step2338) . BIND(((?step2338 + ?targetMotifMatchRegionMatchBeginPositionMF_01379326) - 1) AS ?thisPositionOn68) . BIND(?this AS ?pfs4t339) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb65) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse66) . FILTER ((BOUND(?thisPositionOn67) && BOUND(?thisPositionOn68))) . BIND(URI(CONCAT(STR(?this), '#MF_01379a64')) AS ?annotation64) . BIND(?this AS ?pfs63) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch344 faldo:location ?templateMotifSequenceMatchRegionP51765345 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765347 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379340 . ?templateMotifSequenceMatchRegionP51765345 faldo:begin ?templateMotifSequenceMatchBeginP51765346 . ?templateMotifSequenceMatchBeginP51765346 faldo:position ?templateMotifSequenceMatchBeginPositionP51765341 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765347 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch348 faldo:location ?targetMotifMatchRegionMatch349 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379351 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379342 . ?targetMotifMatchRegionMatch349 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379350 . ?targetMotifMatchRegionMatchBeginMF_01379350 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379343 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379351 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379340, 1, (STRLEN(?templateMotifCigarP51765MF_01379340) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379340, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionP51765341) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1352) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379342, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379342) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1352), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379342, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379342) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1352), '}'), '')))), '[^-]', ''))) AS ?step2353) . BIND(((?step2353 + ?targetMotifMatchRegionMatchBeginPositionMF_01379343) - 1) AS ?thisPositionOn74) . BIND(?thisPositionOn74 AS ?thisPositionOn75) . BIND(?this AS ?pfs4t354) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb71) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse72) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01379a70')) AS ?annotation70) . BIND(?this AS ?pfs69) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch359 faldo:location ?templateMotifSequenceMatchRegionP51765360 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765362 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379355 . ?templateMotifSequenceMatchRegionP51765360 faldo:begin ?templateMotifSequenceMatchBeginP51765361 . ?templateMotifSequenceMatchBeginP51765361 faldo:position ?templateMotifSequenceMatchBeginPositionP51765356 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765362 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch363 faldo:location ?targetMotifMatchRegionMatch364 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379366 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379357 . ?targetMotifMatchRegionMatch364 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379365 . ?targetMotifMatchRegionMatchBeginMF_01379365 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379358 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379366 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379355, 1, (STRLEN(?templateMotifCigarP51765MF_01379355) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379355, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionP51765356) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1367) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379357, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379357) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1367), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379357, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379357) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1367), '}'), '')))), '[^-]', ''))) AS ?step2368) . BIND(((?step2368 + ?targetMotifMatchRegionMatchBeginPositionMF_01379358) - 1) AS ?thisPositionOn81) . BIND(?thisPositionOn81 AS ?thisPositionOn82) . BIND(?this AS ?pfs4t369) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb78) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse79) . FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01379a77')) AS ?annotation77) . BIND(?this AS ?pfs76) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch374 faldo:location ?templateMotifSequenceMatchRegionP51765375 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765377 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379370 . ?templateMotifSequenceMatchRegionP51765375 faldo:begin ?templateMotifSequenceMatchBeginP51765376 . ?templateMotifSequenceMatchBeginP51765376 faldo:position ?templateMotifSequenceMatchBeginPositionP51765371 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765377 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch378 faldo:location ?targetMotifMatchRegionMatch379 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379381 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379372 . ?targetMotifMatchRegionMatch379 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379380 . ?targetMotifMatchRegionMatchBeginMF_01379380 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379373 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379381 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379370, 1, (STRLEN(?templateMotifCigarP51765MF_01379370) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379370, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionP51765371) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1382) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379372, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379372) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379372, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1382), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379372, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379372) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379372, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1382), '}'), '')))), '[^-]', ''))) AS ?step2383) . BIND(((?step2383 + ?targetMotifMatchRegionMatchBeginPositionMF_01379373) - 1) AS ?thisPositionOn88) . BIND(?thisPositionOn88 AS ?thisPositionOn89) . BIND(?this AS ?pfs4t384) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb85) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse86) . FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01379a84')) AS ?annotation84) . BIND(?this AS ?pfs83) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch389 faldo:location ?templateMotifSequenceMatchRegionP51765390 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765392 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379385 . ?templateMotifSequenceMatchRegionP51765390 faldo:begin ?templateMotifSequenceMatchBeginP51765391 . ?templateMotifSequenceMatchBeginP51765391 faldo:position ?templateMotifSequenceMatchBeginPositionP51765386 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765392 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch393 faldo:location ?targetMotifMatchRegionMatch394 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379396 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379387 . ?targetMotifMatchRegionMatch394 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379395 . ?targetMotifMatchRegionMatchBeginMF_01379395 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379388 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379396 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379385, 1, (STRLEN(?templateMotifCigarP51765MF_01379385) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379385, CONCAT('^(?:-*[^-]){', STR(((198 - ?templateMotifSequenceMatchBeginPositionP51765386) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1397) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379387, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379387) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379387, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1397), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379387, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379387) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379387, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1397), '}'), '')))), '[^-]', ''))) AS ?step2398) . BIND(((?step2398 + ?targetMotifMatchRegionMatchBeginPositionMF_01379388) - 1) AS ?thisPositionOn95) . BIND(?thisPositionOn95 AS ?thisPositionOn96) . BIND(?this AS ?pfs4t399) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb92) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse93) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn95, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01379a91')) AS ?annotation91) . BIND(?this AS ?pfs90) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch404 faldo:location ?templateMotifSequenceMatchRegionP51765405 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765407 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379400 . ?templateMotifSequenceMatchRegionP51765405 faldo:begin ?templateMotifSequenceMatchBeginP51765406 . ?templateMotifSequenceMatchBeginP51765406 faldo:position ?templateMotifSequenceMatchBeginPositionP51765401 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765407 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch408 faldo:location ?targetMotifMatchRegionMatch409 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379411 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379402 . ?targetMotifMatchRegionMatch409 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379410 . ?targetMotifMatchRegionMatchBeginMF_01379410 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379403 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379411 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379400, 1, (STRLEN(?templateMotifCigarP51765MF_01379400) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379400, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionP51765401) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1412) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379402, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379402) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379402, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1412), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379402, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379402) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379402, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1412), '}'), '')))), '[^-]', ''))) AS ?step2413) . BIND(((?step2413 + ?targetMotifMatchRegionMatchBeginPositionMF_01379403) - 1) AS ?thisPositionOn102) . BIND(?thisPositionOn102 AS ?thisPositionOn103) . BIND(?this AS ?pfs4t414) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb99) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse100) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01379a98')) AS ?annotation98) . BIND(?this AS ?pfs97) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch419 faldo:location ?templateMotifSequenceMatchRegionP51765420 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765422 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379415 . ?templateMotifSequenceMatchRegionP51765420 faldo:begin ?templateMotifSequenceMatchBeginP51765421 . ?templateMotifSequenceMatchBeginP51765421 faldo:position ?templateMotifSequenceMatchBeginPositionP51765416 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765422 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch423 faldo:location ?targetMotifMatchRegionMatch424 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379426 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379417 . ?targetMotifMatchRegionMatch424 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379425 . ?targetMotifMatchRegionMatchBeginMF_01379425 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379418 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379426 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379415, 1, (STRLEN(?templateMotifCigarP51765MF_01379415) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379415, CONCAT('^(?:-*[^-]){', STR(((272 - ?templateMotifSequenceMatchBeginPositionP51765416) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1427) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379417, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379417) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379417, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1427), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379417, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379417) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379417, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1427), '}'), '')))), '[^-]', ''))) AS ?step2428) . BIND(((?step2428 + ?targetMotifMatchRegionMatchBeginPositionMF_01379418) - 1) AS ?thisPositionOn109) . BIND(?thisPositionOn109 AS ?thisPositionOn110) . BIND(?this AS ?pfs4t429) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb106) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse107) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn109, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01379a105')) AS ?annotation105) . BIND(?this AS ?pfs104) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch434 faldo:location ?templateMotifSequenceMatchRegionP51765435 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765437 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379430 . ?templateMotifSequenceMatchRegionP51765435 faldo:begin ?templateMotifSequenceMatchBeginP51765436 . ?templateMotifSequenceMatchBeginP51765436 faldo:position ?templateMotifSequenceMatchBeginPositionP51765431 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765437 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch438 faldo:location ?targetMotifMatchRegionMatch439 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379441 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379432 . ?targetMotifMatchRegionMatch439 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379440 . ?targetMotifMatchRegionMatchBeginMF_01379440 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379433 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379441 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379430, 1, (STRLEN(?templateMotifCigarP51765MF_01379430) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379430, CONCAT('^(?:-*[^-]){', STR(((332 - ?templateMotifSequenceMatchBeginPositionP51765431) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1442) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379432, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379432) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379432, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1442), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379432, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379432) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379432, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1442), '}'), '')))), '[^-]', ''))) AS ?step2443) . BIND(((?step2443 + ?targetMotifMatchRegionMatchBeginPositionMF_01379433) - 1) AS ?thisPositionOn116) . BIND(?thisPositionOn116 AS ?thisPositionOn117) . BIND(?this AS ?pfs4t444) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfsb113) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfse114) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn116, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01379a112')) AS ?annotation112) . BIND(?this AS ?pfs111) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch449 faldo:location ?templateMotifSequenceMatchRegionP51765450 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765452 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379445 . ?templateMotifSequenceMatchRegionP51765450 faldo:begin ?templateMotifSequenceMatchBeginP51765451 . ?templateMotifSequenceMatchBeginP51765451 faldo:position ?templateMotifSequenceMatchBeginPositionP51765446 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765452 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch453 faldo:location ?targetMotifMatchRegionMatch454 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379456 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379447 . ?targetMotifMatchRegionMatch454 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379455 . ?targetMotifMatchRegionMatchBeginMF_01379455 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379448 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379456 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379445, 1, (STRLEN(?templateMotifCigarP51765MF_01379445) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379445, CONCAT('^(?:-*[^-]){', STR(((333 - ?templateMotifSequenceMatchBeginPositionP51765446) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1457) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379447, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379447) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1457), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379447, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379447) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1457), '}'), '')))), '[^-]', ''))) AS ?step2458) . BIND(((?step2458 + ?targetMotifMatchRegionMatchBeginPositionMF_01379448) - 1) AS ?thisPositionOn123) . BIND(?thisPositionOn123 AS ?thisPositionOn124) . BIND(?this AS ?pfs4t459) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfsb120) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfse121) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn123, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01379a119')) AS ?annotation119) . BIND(?this AS ?pfs118) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch464 faldo:location ?templateMotifSequenceMatchRegionP51765465 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765467 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379460 . ?templateMotifSequenceMatchRegionP51765465 faldo:begin ?templateMotifSequenceMatchBeginP51765466 . ?templateMotifSequenceMatchBeginP51765466 faldo:position ?templateMotifSequenceMatchBeginPositionP51765461 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765467 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch468 faldo:location ?targetMotifMatchRegionMatch469 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379471 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379462 . ?targetMotifMatchRegionMatch469 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379470 . ?targetMotifMatchRegionMatchBeginMF_01379470 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379463 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379471 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379460, 1, (STRLEN(?templateMotifCigarP51765MF_01379460) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379460, CONCAT('^(?:-*[^-]){', STR(((342 - ?templateMotifSequenceMatchBeginPositionP51765461) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1472) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379462, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379462) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1472), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379462, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379462) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1472), '}'), '')))), '[^-]', ''))) AS ?step2473) . BIND(((?step2473 + ?targetMotifMatchRegionMatchBeginPositionMF_01379463) - 1) AS ?thisPositionOn130) . BIND(?thisPositionOn130 AS ?thisPositionOn131) . BIND(?this AS ?pfs4t474) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn130))) AS ?pfsb127) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfse128) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn130, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01379a126')) AS ?annotation126) . BIND(?this AS ?pfs125) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch479 faldo:location ?templateMotifSequenceMatchRegionP51765480 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765482 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379475 . ?templateMotifSequenceMatchRegionP51765480 faldo:begin ?templateMotifSequenceMatchBeginP51765481 . ?templateMotifSequenceMatchBeginP51765481 faldo:position ?templateMotifSequenceMatchBeginPositionP51765476 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765482 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch483 faldo:location ?targetMotifMatchRegionMatch484 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379486 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379477 . ?targetMotifMatchRegionMatch484 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379485 . ?targetMotifMatchRegionMatchBeginMF_01379485 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379478 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379486 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379475, 1, (STRLEN(?templateMotifCigarP51765MF_01379475) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379475, CONCAT('^(?:-*[^-]){', STR(((344 - ?templateMotifSequenceMatchBeginPositionP51765476) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1487) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379477, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379477) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1487), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379477, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379477) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1487), '}'), '')))), '[^-]', ''))) AS ?step2488) . BIND(((?step2488 + ?targetMotifMatchRegionMatchBeginPositionMF_01379478) - 1) AS ?thisPositionOn137) . BIND(?thisPositionOn137 AS ?thisPositionOn138) . BIND(?this AS ?pfs4t489) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn137))) AS ?pfsb134) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn138))) AS ?pfse135) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn137, 1) = 'A')) . BIND(URI(CONCAT(STR(?this), '#MF_01379a133')) AS ?annotation133) . BIND(?this AS ?pfs132) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch494 faldo:location ?templateMotifSequenceMatchRegionP51765495 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765497 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379490 . ?templateMotifSequenceMatchRegionP51765495 faldo:begin ?templateMotifSequenceMatchBeginP51765496 . ?templateMotifSequenceMatchBeginP51765496 faldo:position ?templateMotifSequenceMatchBeginPositionP51765491 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765497 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch498 faldo:location ?targetMotifMatchRegionMatch499 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379501 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379492 . ?targetMotifMatchRegionMatch499 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379500 . ?targetMotifMatchRegionMatchBeginMF_01379500 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379493 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379501 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379490, 1, (STRLEN(?templateMotifCigarP51765MF_01379490) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379490, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionP51765491) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1502) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379492, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379492) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379492, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1502), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379492, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379492) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379492, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1502), '}'), '')))), '[^-]', ''))) AS ?step2503) . BIND(((?step2503 + ?targetMotifMatchRegionMatchBeginPositionMF_01379493) - 1) AS ?thisPositionOn144) . BIND(?thisPositionOn144 AS ?thisPositionOn145) . BIND(?this AS ?pfs4t504) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn144))) AS ?pfsb141) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn145))) AS ?pfse142) . FILTER (REGEX('[YW]', SUBSTR(?thisSequenceValue, ?thisPositionOn144, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01379a140')) AS ?annotation140) . BIND(?this AS ?pfs139) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch509 faldo:location ?templateMotifSequenceMatchRegionP51765510 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765512 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379505 . ?templateMotifSequenceMatchRegionP51765510 faldo:begin ?templateMotifSequenceMatchBeginP51765511 . ?templateMotifSequenceMatchBeginP51765511 faldo:position ?templateMotifSequenceMatchBeginPositionP51765506 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765512 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch513 faldo:location ?targetMotifMatchRegionMatch514 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379516 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379507 . ?targetMotifMatchRegionMatch514 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379515 . ?targetMotifMatchRegionMatchBeginMF_01379515 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379508 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379516 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379505, 1, (STRLEN(?templateMotifCigarP51765MF_01379505) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379505, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionP51765506) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1517) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379507, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379507) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379507, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1517), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379507, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379507) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379507, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1517), '}'), '')))), '[^-]', ''))) AS ?step2518) . BIND(((?step2518 + ?targetMotifMatchRegionMatchBeginPositionMF_01379508) - 1) AS ?thisPositionOn151) . BIND(?thisPositionOn151 AS ?thisPositionOn152) . BIND(?this AS ?pfs4t519) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn151))) AS ?pfsb148) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn152))) AS ?pfse149) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn151, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01379a147')) AS ?annotation147) . BIND(?this AS ?pfs146) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch524 faldo:location ?templateMotifSequenceMatchRegionP51765525 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765527 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379520 . ?templateMotifSequenceMatchRegionP51765525 faldo:begin ?templateMotifSequenceMatchBeginP51765526 . ?templateMotifSequenceMatchBeginP51765526 faldo:position ?templateMotifSequenceMatchBeginPositionP51765521 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765527 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch528 faldo:location ?targetMotifMatchRegionMatch529 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379531 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379522 . ?targetMotifMatchRegionMatch529 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379530 . ?targetMotifMatchRegionMatchBeginMF_01379530 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379523 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379531 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379520, 1, (STRLEN(?templateMotifCigarP51765MF_01379520) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379520, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionP51765521) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1532) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379522, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379522) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379522, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1532), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379522, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379522) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379522, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1532), '}'), '')))), '[^-]', ''))) AS ?step2533) . BIND(((?step2533 + ?targetMotifMatchRegionMatchBeginPositionMF_01379523) - 1) AS ?thisPositionOn158) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379520, 1, (STRLEN(?templateMotifCigarP51765MF_01379520) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379520, CONCAT('^(?:-*[^-]){', STR(((265 - ?templateMotifSequenceMatchBeginPositionP51765521) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1534) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379522, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379522) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379522, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1534), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379522, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379522) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379522, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1534), '}'), '')))), '[^-]', ''))) AS ?step2535) . BIND(((?step2535 + ?targetMotifMatchRegionMatchBeginPositionMF_01379523) - 1) AS ?thisPositionOn159) . BIND(?this AS ?pfs4t536) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn158))) AS ?pfsb155) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn159))) AS ?pfse156) . FILTER (REGEX('[AS]F', SUBSTR(?thisSequenceValue, ?thisPositionOn158, (?thisPositionOn159 - ?thisPositionOn158)))) . BIND(URI(CONCAT(STR(?this), '#MF_01379a154')) AS ?annotation154) . BIND(?this AS ?pfs153) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch541 faldo:location ?templateMotifSequenceMatchRegionP51765542 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765544 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379537 . ?templateMotifSequenceMatchRegionP51765542 faldo:begin ?templateMotifSequenceMatchBeginP51765543 . ?templateMotifSequenceMatchBeginP51765543 faldo:position ?templateMotifSequenceMatchBeginPositionP51765538 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765544 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch545 faldo:location ?targetMotifMatchRegionMatch546 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379548 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379539 . ?targetMotifMatchRegionMatch546 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379547 . ?targetMotifMatchRegionMatchBeginMF_01379547 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379540 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379548 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379537, 1, (STRLEN(?templateMotifCigarP51765MF_01379537) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379537, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionP51765538) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1549) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379539, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379539) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379539, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1549), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379539, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379539) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379539, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1549), '}'), '')))), '[^-]', ''))) AS ?step2550) . BIND(((?step2550 + ?targetMotifMatchRegionMatchBeginPositionMF_01379540) - 1) AS ?thisPositionOn164) . BIND(?thisPositionOn164 AS ?thisPositionOn165) . BIND(?this AS ?pfs4t551) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn164))) AS ?pfsb162) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn165))) AS ?pfse163) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn164, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01379a161')) AS ?annotation161) . BIND(?this AS ?pfs160) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch556 faldo:location ?templateMotifSequenceMatchRegionP51765557 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765559 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379552 . ?templateMotifSequenceMatchRegionP51765557 faldo:begin ?templateMotifSequenceMatchBeginP51765558 . ?templateMotifSequenceMatchBeginP51765558 faldo:position ?templateMotifSequenceMatchBeginPositionP51765553 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765559 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch560 faldo:location ?targetMotifMatchRegionMatch561 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379563 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379554 . ?targetMotifMatchRegionMatch561 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379562 . ?targetMotifMatchRegionMatchBeginMF_01379562 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379555 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379563 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379552, 1, (STRLEN(?templateMotifCigarP51765MF_01379552) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379552, CONCAT('^(?:-*[^-]){', STR(((190 - ?templateMotifSequenceMatchBeginPositionP51765553) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1564) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379554, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379554) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379554, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1564), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379554, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379554) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379554, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1564), '}'), '')))), '[^-]', ''))) AS ?step2565) . BIND(((?step2565 + ?targetMotifMatchRegionMatchBeginPositionMF_01379555) - 1) AS ?thisPositionOn170) . BIND(?thisPositionOn170 AS ?thisPositionOn171) . BIND(?this AS ?pfs4t566) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn170))) AS ?pfsb168) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn171))) AS ?pfse169) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn170, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01379a167')) AS ?annotation167) . BIND(?this AS ?pfs166) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch571 faldo:location ?templateMotifSequenceMatchRegionP51765572 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765574 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379567 . ?templateMotifSequenceMatchRegionP51765572 faldo:begin ?templateMotifSequenceMatchBeginP51765573 . ?templateMotifSequenceMatchBeginP51765573 faldo:position ?templateMotifSequenceMatchBeginPositionP51765568 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765574 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch575 faldo:location ?targetMotifMatchRegionMatch576 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379578 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379569 . ?targetMotifMatchRegionMatch576 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379577 . ?targetMotifMatchRegionMatchBeginMF_01379577 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379570 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379578 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33090 . })) . BIND(1 AS ?thisPositionOn176) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379567, 1, (STRLEN(?templateMotifCigarP51765MF_01379567) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379567, CONCAT('^(?:-*[^-]){', STR(((344 - ?templateMotifSequenceMatchBeginPositionP51765568) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1579) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379569, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379569) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379569, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1579), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379569, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379569) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379569, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1579), '}'), '')))), '[^-]', ''))) AS ?step2580) . BIND(((?step2580 + ?targetMotifMatchRegionMatchBeginPositionMF_01379570) - 1) AS ?thisPositionOn177) . BIND(?this AS ?pfs5t581) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn176))) AS ?pfsb174) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn177))) AS ?pfse175) . FILTER ((BOUND(?thisPositionOn176) && BOUND(?thisPositionOn177))) . BIND(URI(CONCAT(STR(?this), '#MF_01379a173')) AS ?annotation173) . BIND(?this AS ?pfs172) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch586 faldo:location ?templateMotifSequenceMatchRegionP51765587 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765589 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379582 . ?templateMotifSequenceMatchRegionP51765587 faldo:begin ?templateMotifSequenceMatchBeginP51765588 . ?templateMotifSequenceMatchBeginP51765588 faldo:position ?templateMotifSequenceMatchBeginPositionP51765583 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765589 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch590 faldo:location ?targetMotifMatchRegionMatch591 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379593 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379584 . ?targetMotifMatchRegionMatch591 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379592 . ?targetMotifMatchRegionMatchBeginMF_01379592 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379585 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379593 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33090 . })) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379582, 1, (STRLEN(?templateMotifCigarP51765MF_01379582) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379582, CONCAT('^(?:-*[^-]){', STR(((345 - ?templateMotifSequenceMatchBeginPositionP51765583) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1594) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379584, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379584) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379584, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1594), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379584, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379584) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379584, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1594), '}'), '')))), '[^-]', ''))) AS ?step2595) . BIND(((?step2595 + ?targetMotifMatchRegionMatchBeginPositionMF_01379585) - 1) AS ?thisPositionOn182) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn183) . BIND(?this AS ?pfs5t596) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn182))) AS ?pfsb180) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn183))) AS ?pfse181) . FILTER ((BOUND(?thisPositionOn182) && BOUND(?thisPositionOn183))) . BIND(URI(CONCAT(STR(?this), '#MF_01379a179')) AS ?annotation179) . BIND(?this AS ?pfs178) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch601 faldo:location ?templateMotifSequenceMatchRegionP51765602 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765604 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379597 . ?templateMotifSequenceMatchRegionP51765602 faldo:begin ?templateMotifSequenceMatchBeginP51765603 . ?templateMotifSequenceMatchBeginP51765603 faldo:position ?templateMotifSequenceMatchBeginPositionP51765598 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765604 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch605 faldo:location ?targetMotifMatchRegionMatch606 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379608 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379599 . ?targetMotifMatchRegionMatch606 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379607 . ?targetMotifMatchRegionMatchBeginMF_01379607 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379600 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379608 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . BIND(1 AS ?thisPositionOn188) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn189) . BIND(?this AS ?pfs6t609) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn188))) AS ?pfsb186) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn189))) AS ?pfse187) . FILTER ((BOUND(?thisPositionOn188) && BOUND(?thisPositionOn189))) . BIND(URI(CONCAT(STR(?this), '#MF_01379a185')) AS ?annotation185) . BIND(?this AS ?pfs184) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch614 faldo:location ?templateMotifSequenceMatchRegionP51765615 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765617 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379610 . ?templateMotifSequenceMatchRegionP51765615 faldo:begin ?templateMotifSequenceMatchBeginP51765616 . ?templateMotifSequenceMatchBeginP51765616 faldo:position ?templateMotifSequenceMatchBeginPositionP51765611 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765617 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch618 faldo:location ?targetMotifMatchRegionMatch619 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379621 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379612 . ?targetMotifMatchRegionMatch619 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379620 . ?targetMotifMatchRegionMatchBeginMF_01379620 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379613 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379621 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33090 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379610, 1, (STRLEN(?templateMotifCigarP51765MF_01379610) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379610, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP51765611) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1622) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379612, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379612) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379612, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1622), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379612, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379612) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379612, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1622), '}'), '')))), '[^-]', ''))) AS ?step2623) . BIND(((?step2623 + ?targetMotifMatchRegionMatchBeginPositionMF_01379613) - 1) AS ?thisPositionOn194) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379610, 1, (STRLEN(?templateMotifCigarP51765MF_01379610) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379610, CONCAT('^(?:-*[^-]){', STR(((344 - ?templateMotifSequenceMatchBeginPositionP51765611) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1624) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379612, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379612) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379612, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1624), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379612, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379612) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379612, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1624), '}'), '')))), '[^-]', ''))) AS ?step2625) . BIND(((?step2625 + ?targetMotifMatchRegionMatchBeginPositionMF_01379613) - 1) AS ?thisPositionOn195) . BIND(?this AS ?pfs7t626) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn194))) AS ?pfsb192) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn195))) AS ?pfse193) . FILTER ((BOUND(?thisPositionOn194) && BOUND(?thisPositionOn195))) . BIND(URI(CONCAT(STR(?this), '#MF_01379a191')) AS ?annotation191) . BIND(?this AS ?pfs190) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch631 faldo:location ?templateMotifSequenceMatchRegionP51765632 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765634 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379627 . ?templateMotifSequenceMatchRegionP51765632 faldo:begin ?templateMotifSequenceMatchBeginP51765633 . ?templateMotifSequenceMatchBeginP51765633 faldo:position ?templateMotifSequenceMatchBeginPositionP51765628 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765634 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch635 faldo:location ?targetMotifMatchRegionMatch636 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379638 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379629 . ?targetMotifMatchRegionMatch636 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379637 . ?targetMotifMatchRegionMatchBeginMF_01379637 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379630 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379638 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33090 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379627, 1, (STRLEN(?templateMotifCigarP51765MF_01379627) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379627, CONCAT('^(?:-*[^-]){', STR(((345 - ?templateMotifSequenceMatchBeginPositionP51765628) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1639) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379629, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379629) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379629, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1639), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379629, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379629) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379629, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1639), '}'), '')))), '[^-]', ''))) AS ?step2640) . BIND(((?step2640 + ?targetMotifMatchRegionMatchBeginPositionMF_01379630) - 1) AS ?thisPositionOn200) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn201) . BIND(?this AS ?pfs7t641) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn200))) AS ?pfsb198) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn201))) AS ?pfse199) . FILTER ((BOUND(?thisPositionOn200) && BOUND(?thisPositionOn201))) . BIND(URI(CONCAT(STR(?this), '#MF_01379a197')) AS ?annotation197) . BIND(?this AS ?pfs196) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch646 faldo:location ?templateMotifSequenceMatchRegionP51765647 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP51765649 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP51765MF_01379642 . ?templateMotifSequenceMatchRegionP51765647 faldo:begin ?templateMotifSequenceMatchBeginP51765648 . ?templateMotifSequenceMatchBeginP51765648 faldo:position ?templateMotifSequenceMatchBeginPositionP51765643 ; faldo:reference isoform:P51765-1 . ?templateMotifSequenceProfileAlignmentOperationP51765649 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?targetMotifMatch650 faldo:location ?targetMotifMatchRegionMatch651 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01379653 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP51765MF_01379644 . ?targetMotifMatchRegionMatch651 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01379652 . ?targetMotifMatchRegionMatchBeginMF_01379652 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01379645 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01379653 edam:has_input signature:MF_01379 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33090 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP51765MF_01379642, 1, (STRLEN(?templateMotifCigarP51765MF_01379642) - STRLEN(REPLACE(?templateMotifCigarP51765MF_01379642, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP51765643) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1654) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP51765MF_01379644, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379644) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379644, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1654), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP51765MF_01379644, 1, (STRLEN(?targetMotifMatchCigarP51765MF_01379644) - STRLEN(REPLACE(?targetMotifMatchCigarP51765MF_01379644, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1654), '}'), '')))), '[^-]', ''))) AS ?step2655) . BIND(((?step2655 + ?targetMotifMatchRegionMatchBeginPositionMF_01379645) - 1) AS ?thisPositionOn206) . BIND(?thisPositionOn206 AS ?thisPositionOn207) . BIND(?this AS ?pfs7t656) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn206))) AS ?pfsb204) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn207))) AS ?pfse205) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn206, 1) = 'M')) . BIND(URI(CONCAT(STR(?this), '#MF_01379a203')) AS ?annotation203) . BIND(?this AS ?pfs202) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag657) . } BIND(IF(BOUND(?tagacetyl), ?caseWithTag657, ?UNBOUND_VARIABLE) AS ?case11) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag658) . } BIND(IF(BOUND(?tagphospho), ?caseWithTag658, ?UNBOUND_VARIABLE) AS ?case12) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag659) . } BIND(IF(BOUND(?tagCleavage), ?caseWithTag659, ?UNBOUND_VARIABLE) AS ?case13) . OPTIONAL { ?this a up:Protein . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } BIND(?this AS ?case14) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33071 . BIND(?this AS ?case15) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1117 . BIND(?this AS ?case16) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33071 . })) . BIND(?this AS ?case17) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1117 . })) . BIND(?this AS ?case18) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33071 . FILTER (! (EXISTS { { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } })) . BIND(?this AS ?case19) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33071 . })) . BIND(?this AS ?case20) . } }