CONSTRUCT { _:564606 up:source unirule:MF_01559 . _:564607 up:source unirule:MF_01559 . _:564608 up:source unirule:MF_01559 . _:564609 up:source unirule:MF_01559 . _:564610 up:source unirule:MF_01559 . _:564611 up:source unirule:MF_01559 . _:564612 up:source unirule:MF_01559 . _:564613 up:source unirule:MF_01559 . _:564614 up:source unirule:MF_01559 . _:564615 up:source unirule:MF_01559 . _:564616 up:source unirule:MF_01559 . _:564617 up:source unirule:MF_01559 . _:564618 up:source unirule:MF_01559 . _:564619 up:source unirule:MF_01559 . _:564620 up:source unirule:MF_01559 . _:564621 up:source unirule:MF_01559 . _:564622 up:source unirule:MF_01559 . _:564623 up:source unirule:MF_01559 . _:564624 up:source unirule:MF_01559 . _:564625 up:source unirule:MF_01559 . _:564626 up:source unirule:MF_01559 . _:564627 up:source unirule:MF_01559 . _:564628 up:source unirule:MF_01559 . _:564629 up:source unirule:MF_01559 . _:564630 up:source unirule:MF_01559 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation6 ; up:classifiedWith GO:0005886 , GO:0006089 , GO:0140171 , keyword:1003 , keyword:285 , keyword:288 , keyword:472 , keyword:560 ; up:recommendedName ?name0 . ?name0 up:ecName '1.1.-.-' ; up:fullName 'L-lactate dehydrogenase' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'lldD' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Catalyzes the conversion of L-lactate to pyruvate. Is coupled to the respiratory chain.' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/45816>. ?annotation5 up:cofactor chebi:58210 ; rdf:type up:Cofactor_Annotation . ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.' . ?case8 up:classifiedWith keyword:997 . ?pfs10 up:annotation ?annotation11 . ?annotation11 faldo:begin ?pfsb12 ; faldo:end ?pfse13 ; up:ligand ?ligand14 ; rdf:type up:Binding_Site_Annotation . ?pfsb12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?ligand14 rdfs:subClassOf chebi:58210 . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor' . ?pfsb19 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation . ?pfsb25 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf ?molecule28 . ?molecule28 rdfs:label 'substrate' . ?pfs31 up:annotation ?annotation32 . ?annotation32 faldo:begin ?pfsb33 ; faldo:end ?pfse34 ; up:ligand ?ligand35 ; rdf:type up:Binding_Site_Annotation . ?pfsb33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?ligand35 rdfs:subClassOf chebi:58210 . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; up:ligand ?ligand42 ; rdf:type up:Binding_Site_Annotation . ?pfsb40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?ligand42 rdfs:subClassOf chebi:58210 . ?pfs45 up:annotation ?annotation46 . ?annotation46 faldo:begin ?pfsb47 ; faldo:end ?pfse48 ; up:ligand ?ligand49 ; rdf:type up:Binding_Site_Annotation . ?pfsb47 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse48 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?ligand49 rdfs:subClassOf ?molecule50 . ?molecule50 rdfs:label 'substrate' . ?pfs53 up:annotation ?annotation54 . ?annotation54 faldo:begin ?pfsb55 ; faldo:end ?pfse56 ; up:ligand ?ligand57 ; rdf:type up:Binding_Site_Annotation . ?pfsb55 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfse56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?ligand57 rdfs:subClassOf chebi:58210 . ?pfs60 up:annotation ?annotation61 . ?annotation61 faldo:begin ?pfsb62 ; faldo:end ?pfse63 ; up:ligand ?ligand64 ; rdf:type up:Binding_Site_Annotation . ?pfsb62 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse63 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?ligand64 rdfs:subClassOf ?molecule65 . ?molecule65 rdfs:label 'substrate' . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; up:ligand ?ligand72 ; rdf:type up:Binding_Site_Annotation . ?pfsb70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?ligand72 rdfs:subClassOf chebi:58210 . ?pfs75 up:annotation ?annotation76 . ?annotation76 faldo:begin ?pfsb77 ; faldo:end ?pfse78 ; up:ligand ?ligand79 ; rdf:type up:Binding_Site_Annotation . ?pfsb77 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . ?pfse78 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?ligand79 rdfs:subClassOf ?molecule80 . ?molecule80 rdfs:label 'substrate' . _:564631 a rdf:Statement ; up:attribution _:564606 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:564632 a rdf:Statement ; up:attribution _:564607 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:564633 a rdf:Statement ; up:attribution _:564608 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:564634 a rdf:Statement ; up:attribution _:564609 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:564635 a rdf:Statement ; up:attribution _:564610 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:564636 a rdf:Statement ; up:attribution _:564611 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:564637 a rdf:Statement ; up:attribution _:564612 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1003 . _:564638 a rdf:Statement ; up:attribution _:564613 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:564639 a rdf:Statement ; up:attribution _:564614 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:285 . _:564640 a rdf:Statement ; up:attribution _:564615 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:288 . _:564641 a rdf:Statement ; up:attribution _:564616 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:564642 a rdf:Statement ; up:attribution _:564617 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0140171 . _:564643 a rdf:Statement ; up:attribution _:564618 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006089 . _:564644 a rdf:Statement ; up:attribution _:564619 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005886 . _:564645 a rdf:Statement ; up:attribution _:564620 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object keyword:997 . _:564646 a rdf:Statement ; up:source unirule:MF_01559 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:564647 a rdf:Statement ; up:attribution _:564621 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:564648 a rdf:Statement ; up:source unirule:MF_01559 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:564649 a rdf:Statement ; up:attribution _:564622 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:564650 a rdf:Statement ; up:source unirule:MF_01559 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:564651 a rdf:Statement ; up:attribution _:564623 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:564652 a rdf:Statement ; up:source unirule:MF_01559 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:564653 a rdf:Statement ; up:attribution _:564624 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:564654 a rdf:Statement ; up:source unirule:MF_01559 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:564655 a rdf:Statement ; up:attribution _:564625 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:564656 a rdf:Statement ; up:source unirule:MF_01559 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:564657 a rdf:Statement ; up:attribution _:564626 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:564658 a rdf:Statement ; up:source unirule:MF_01559 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:564659 a rdf:Statement ; up:attribution _:564627 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:564660 a rdf:Statement ; up:source unirule:MF_01559 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:564661 a rdf:Statement ; up:attribution _:564628 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:564662 a rdf:Statement ; up:source unirule:MF_01559 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:564663 a rdf:Statement ; up:attribution _:564629 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:564664 a rdf:Statement ; up:source unirule:MF_01559 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:564665 a rdf:Statement ; up:attribution _:564630 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01559 #Rule MF_01559 Created by:? on:2005-12-13 Modified by:Catherine Rivoire on:2025-06-12 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01559 . ?thisOrganism rdfs:subClassOf+ taxon:1224 . BIND(URI(CONCAT(STR(?this), '#MF_01559a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01559a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01559a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01559a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01559a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP3323288 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3323290 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33232MF_0155983 . ?templateMotifSequenceMatchRegionP3323288 faldo:begin ?templateMotifSequenceMatchBeginP3323289 . ?templateMotifSequenceMatchBeginP3323289 faldo:position ?templateMotifSequenceMatchBeginPositionP3323284 ; faldo:reference isoform:P33232-1 . ?templateMotifSequenceProfileAlignmentOperationP3323290 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . ?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0155994 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33232MF_0155985 . ?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0155993 . ?targetMotifMatchRegionMatchBeginMF_0155993 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0155986 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0155994 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33232MF_0155983, 1, (STRLEN(?templateMotifCigarP33232MF_0155983) - STRLEN(REPLACE(?templateMotifCigarP33232MF_0155983, CONCAT('^(?:-*[^-]){', STR(((306 - ?templateMotifSequenceMatchBeginPositionP3323284) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33232MF_0155985, 1, (STRLEN(?targetMotifMatchCigarP33232MF_0155985) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_0155985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33232MF_0155985, 1, (STRLEN(?targetMotifMatchCigarP33232MF_0155985) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_0155985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) . BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0155986) - 1) AS ?thisPositionOn15) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33232MF_0155983, 1, (STRLEN(?templateMotifCigarP33232MF_0155983) - STRLEN(REPLACE(?templateMotifCigarP33232MF_0155983, CONCAT('^(?:-*[^-]){', STR(((330 - ?templateMotifSequenceMatchBeginPositionP3323284) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33232MF_0155985, 1, (STRLEN(?targetMotifMatchCigarP33232MF_0155985) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_0155985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33232MF_0155985, 1, (STRLEN(?targetMotifMatchCigarP33232MF_0155985) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_0155985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) . BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0155986) - 1) AS ?thisPositionOn16) . BIND(?this AS ?pfs1t99) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) . FILTER ((BOUND(?thisPositionOn15) && BOUND(?thisPositionOn16))) . BIND(URI(CONCAT(STR(?this), '#MF_01559a11')) AS ?annotation11) . BIND(?this AS ?pfs10) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionP33232105 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33232107 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33232MF_01559100 . ?templateMotifSequenceMatchRegionP33232105 faldo:begin ?templateMotifSequenceMatchBeginP33232106 . ?templateMotifSequenceMatchBeginP33232106 faldo:position ?templateMotifSequenceMatchBeginPositionP33232101 ; faldo:reference isoform:P33232-1 . ?templateMotifSequenceProfileAlignmentOperationP33232107 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . ?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01559111 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33232MF_01559102 . ?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01559110 . ?targetMotifMatchRegionMatchBeginMF_01559110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01559103 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01559111 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33232MF_01559100, 1, (STRLEN(?templateMotifCigarP33232MF_01559100) - STRLEN(REPLACE(?templateMotifCigarP33232MF_01559100, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionP33232101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33232MF_01559102, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559102) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33232MF_01559102, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559102) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) . BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01559103) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs1t114) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01559a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionP33232120 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33232122 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33232MF_01559115 . ?templateMotifSequenceMatchRegionP33232120 faldo:begin ?templateMotifSequenceMatchBeginP33232121 . ?templateMotifSequenceMatchBeginP33232121 faldo:position ?templateMotifSequenceMatchBeginPositionP33232116 ; faldo:reference isoform:P33232-1 . ?templateMotifSequenceProfileAlignmentOperationP33232122 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . ?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01559126 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33232MF_01559117 . ?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01559125 . ?targetMotifMatchRegionMatchBeginMF_01559125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01559118 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01559126 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33232MF_01559115, 1, (STRLEN(?templateMotifCigarP33232MF_01559115) - STRLEN(REPLACE(?templateMotifCigarP33232MF_01559115, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionP33232116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33232MF_01559117, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559117) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33232MF_01559117, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559117) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) . BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_01559118) - 1) AS ?thisPositionOn29) . BIND(?thisPositionOn29 AS ?thisPositionOn30) . BIND(?this AS ?pfs1t129) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse26) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01559a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionP33232135 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33232137 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33232MF_01559130 . ?templateMotifSequenceMatchRegionP33232135 faldo:begin ?templateMotifSequenceMatchBeginP33232136 . ?templateMotifSequenceMatchBeginP33232136 faldo:position ?templateMotifSequenceMatchBeginPositionP33232131 ; faldo:reference isoform:P33232-1 . ?templateMotifSequenceProfileAlignmentOperationP33232137 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . ?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01559141 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33232MF_01559132 . ?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01559140 . ?targetMotifMatchRegionMatchBeginMF_01559140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01559133 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01559141 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33232MF_01559130, 1, (STRLEN(?templateMotifCigarP33232MF_01559130) - STRLEN(REPLACE(?templateMotifCigarP33232MF_01559130, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionP33232131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33232MF_01559132, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559132) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33232MF_01559132, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559132) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) . BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_01559133) - 1) AS ?thisPositionOn36) . BIND(?thisPositionOn36 AS ?thisPositionOn37) . BIND(?this AS ?pfs1t144) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_01559a32')) AS ?annotation32) . BIND(?this AS ?pfs31) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionP33232150 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33232152 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33232MF_01559145 . ?templateMotifSequenceMatchRegionP33232150 faldo:begin ?templateMotifSequenceMatchBeginP33232151 . ?templateMotifSequenceMatchBeginP33232151 faldo:position ?templateMotifSequenceMatchBeginPositionP33232146 ; faldo:reference isoform:P33232-1 . ?templateMotifSequenceProfileAlignmentOperationP33232152 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . ?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01559156 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33232MF_01559147 . ?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01559155 . ?targetMotifMatchRegionMatchBeginMF_01559155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01559148 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01559156 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33232MF_01559145, 1, (STRLEN(?templateMotifCigarP33232MF_01559145) - STRLEN(REPLACE(?templateMotifCigarP33232MF_01559145, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionP33232146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33232MF_01559147, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559147) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33232MF_01559147, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559147) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) . BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_01559148) - 1) AS ?thisPositionOn43) . BIND(?thisPositionOn43 AS ?thisPositionOn44) . BIND(?this AS ?pfs1t159) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_01559a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionP33232165 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33232167 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33232MF_01559160 . ?templateMotifSequenceMatchRegionP33232165 faldo:begin ?templateMotifSequenceMatchBeginP33232166 . ?templateMotifSequenceMatchBeginP33232166 faldo:position ?templateMotifSequenceMatchBeginPositionP33232161 ; faldo:reference isoform:P33232-1 . ?templateMotifSequenceProfileAlignmentOperationP33232167 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . ?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01559171 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33232MF_01559162 . ?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01559170 . ?targetMotifMatchRegionMatchBeginMF_01559170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01559163 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01559171 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33232MF_01559160, 1, (STRLEN(?templateMotifCigarP33232MF_01559160) - STRLEN(REPLACE(?templateMotifCigarP33232MF_01559160, CONCAT('^(?:-*[^-]){', STR(((129 - ?templateMotifSequenceMatchBeginPositionP33232161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33232MF_01559162, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559162) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33232MF_01559162, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559162) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) . BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_01559163) - 1) AS ?thisPositionOn51) . BIND(?thisPositionOn51 AS ?thisPositionOn52) . BIND(?this AS ?pfs1t174) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb47) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse48) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01559a46')) AS ?annotation46) . BIND(?this AS ?pfs45) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionP33232180 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33232182 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33232MF_01559175 . ?templateMotifSequenceMatchRegionP33232180 faldo:begin ?templateMotifSequenceMatchBeginP33232181 . ?templateMotifSequenceMatchBeginP33232181 faldo:position ?templateMotifSequenceMatchBeginPositionP33232176 ; faldo:reference isoform:P33232-1 . ?templateMotifSequenceProfileAlignmentOperationP33232182 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . ?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01559186 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33232MF_01559177 . ?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01559185 . ?targetMotifMatchRegionMatchBeginMF_01559185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01559178 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01559186 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33232MF_01559175, 1, (STRLEN(?templateMotifCigarP33232MF_01559175) - STRLEN(REPLACE(?templateMotifCigarP33232MF_01559175, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionP33232176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33232MF_01559177, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559177) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33232MF_01559177, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559177) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) . BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_01559178) - 1) AS ?thisPositionOn58) . BIND(?thisPositionOn58 AS ?thisPositionOn59) . BIND(?this AS ?pfs1t189) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_01559a54')) AS ?annotation54) . BIND(?this AS ?pfs53) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionP33232195 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33232197 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33232MF_01559190 . ?templateMotifSequenceMatchRegionP33232195 faldo:begin ?templateMotifSequenceMatchBeginP33232196 . ?templateMotifSequenceMatchBeginP33232196 faldo:position ?templateMotifSequenceMatchBeginPositionP33232191 ; faldo:reference isoform:P33232-1 . ?templateMotifSequenceProfileAlignmentOperationP33232197 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . ?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01559201 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33232MF_01559192 . ?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01559200 . ?targetMotifMatchRegionMatchBeginMF_01559200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01559193 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01559201 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33232MF_01559190, 1, (STRLEN(?templateMotifCigarP33232MF_01559190) - STRLEN(REPLACE(?templateMotifCigarP33232MF_01559190, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP33232191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33232MF_01559192, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559192) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33232MF_01559192, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559192) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) . BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_01559193) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs1t204) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb62) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse63) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01559a61')) AS ?annotation61) . BIND(?this AS ?pfs60) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionP33232210 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33232212 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33232MF_01559205 . ?templateMotifSequenceMatchRegionP33232210 faldo:begin ?templateMotifSequenceMatchBeginP33232211 . ?templateMotifSequenceMatchBeginP33232211 faldo:position ?templateMotifSequenceMatchBeginPositionP33232206 ; faldo:reference isoform:P33232-1 . ?templateMotifSequenceProfileAlignmentOperationP33232212 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . ?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01559216 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33232MF_01559207 . ?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01559215 . ?targetMotifMatchRegionMatchBeginMF_01559215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01559208 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01559216 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33232MF_01559205, 1, (STRLEN(?templateMotifCigarP33232MF_01559205) - STRLEN(REPLACE(?templateMotifCigarP33232MF_01559205, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP33232206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33232MF_01559207, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559207) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33232MF_01559207, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559207) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) . BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_01559208) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs1t219) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01559a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionP33232225 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33232227 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33232MF_01559220 . ?templateMotifSequenceMatchRegionP33232225 faldo:begin ?templateMotifSequenceMatchBeginP33232226 . ?templateMotifSequenceMatchBeginP33232226 faldo:position ?templateMotifSequenceMatchBeginPositionP33232221 ; faldo:reference isoform:P33232-1 . ?templateMotifSequenceProfileAlignmentOperationP33232227 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . ?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01559231 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33232MF_01559222 . ?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01559230 . ?targetMotifMatchRegionMatchBeginMF_01559230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01559223 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01559231 edam:has_input signature:MF_01559 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33232MF_01559220, 1, (STRLEN(?templateMotifCigarP33232MF_01559220) - STRLEN(REPLACE(?templateMotifCigarP33232MF_01559220, CONCAT('^(?:-*[^-]){', STR(((278 - ?templateMotifSequenceMatchBeginPositionP33232221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33232MF_01559222, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559222) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33232MF_01559222, 1, (STRLEN(?targetMotifMatchCigarP33232MF_01559222) - STRLEN(REPLACE(?targetMotifMatchCigarP33232MF_01559222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) . BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_01559223) - 1) AS ?thisPositionOn81) . BIND(?thisPositionOn81 AS ?thisPositionOn82) . BIND(?this AS ?pfs1t234) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb77) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse78) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01559a76')) AS ?annotation76) . BIND(?this AS ?pfs75) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:286 . BIND(?this AS ?case7) . } OPTIONAL { ?this a up:Protein . { ?this up:proteome <http://purl.uniprot.org/proteomes/Membrane#2>. } UNION { ?this up:proteome ?p235 . ?p235 skos:narrower <http://purl.uniprot.org/proteomes/Membrane#2>. } BIND(?this AS ?case8) . } OPTIONAL { ?this a up:Protein . { FILTER (! (EXISTS { { ?this up:proteome <http://purl.uniprot.org/proteomes/Membrane#any>. } UNION { ?this up:proteome ?p236 . ?p236 skos:narrower <http://purl.uniprot.org/proteomes/Membrane#any>. } })) . } UNION { { ?this up:proteome <http://purl.uniprot.org/proteomes/Membrane#1>. } UNION { ?this up:proteome ?p237 . ?p237 skos:narrower <http://purl.uniprot.org/proteomes/Membrane#1>. } } BIND(?this AS ?case9) . } }