CONSTRUCT { _:562106 up:source unirule:MF_01578 . _:562107 up:source unirule:MF_01578 . _:562108 up:source unirule:MF_01578 . _:562109 up:source unirule:MF_01578 . _:562110 up:source unirule:MF_01578 . _:562111 up:source unirule:MF_01578 . _:562112 up:source unirule:MF_01578 . _:562113 up:source unirule:MF_01578 . _:562114 up:source unirule:MF_01578 . _:562115 up:source unirule:MF_01578 . _:562116 up:source unirule:MF_01578 . _:562117 up:source unirule:MF_01578 . _:562118 up:source unirule:MF_01578 . _:562119 up:source unirule:MF_01578 . _:562120 up:source unirule:MF_01578 . _:562121 up:source unirule:MF_01578 . _:562122 up:source unirule:MF_01578 . _:562123 up:source unirule:MF_01578 . _:562124 up:source unirule:MF_01578 . _:562125 up:source unirule:MF_01578 . _:562126 up:source unirule:MF_01578 . _:562127 up:source unirule:MF_01578 . _:562128 up:source unirule:MF_01578 . _:562129 up:source unirule:MF_01578 . _:562130 up:source unirule:MF_01578 . _:562131 up:source unirule:MF_01578 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation8 , ?annotation10 , ?annotation12 , ?annotation13 , ?annotation14 ; up:classifiedWith GO:0004764 , GO:0009423 , GO:0030266 , keyword:28 , keyword:520 , keyword:521 , keyword:560 , keyword:57 ; up:recommendedName ?name0 . ?name0 up:ecName '1.1.1.282' ; up:fullName 'Quinate/shikimate dehydrogenase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'NAD-dependent shikimate 5-dehydrogenase' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'ydiB' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'The actual biological function of YdiB remains unclear, nor is it known whether 3-dehydroshikimate or quinate represents the natural substrate. Catalyzes the reversible NAD-dependent reduction of both 3-dehydroshikimate (DHSA) and 3-dehydroquinate to yield shikimate (SA) and quinate, respectively. It can use both NAD or NADP for catalysis, however it has higher catalytic efficiency with NAD.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/22364>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.1.1.282>. ?annotation6 up:activity ?activity7 ; rdf:type up:Catalytic_Activity_Annotation . ?activity7 up:catalyticActivity <http://rdf.rhea-db.org/18425>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.1.1.282>. ?annotation8 up:activity ?activity9 ; rdf:type up:Catalytic_Activity_Annotation . ?activity9 up:catalyticActivity <http://rdf.rhea-db.org/17737>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.1.1.282>. ?annotation10 up:activity ?activity11 ; rdf:type up:Catalytic_Activity_Annotation . ?activity11 up:catalyticActivity <http://rdf.rhea-db.org/17741>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.1.1.282>. ?annotation12 a up:Pathway_Annotation ; rdfs:comment 'Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 4/7.' . ?annotation13 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation14 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the shikimate dehydrogenase family.' . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; up:ligand ?ligand19 ; rdf:type up:Binding_Site_Annotation . ?pfsb17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?ligand19 rdfs:subClassOf chebi:57540 . ?pfs22 up:annotation ?annotation23 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; up:ligand ?ligand26 ; rdf:type up:Binding_Site_Annotation . ?pfsb24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?ligand26 rdfs:subClassOf chebi:57540 . ?pfs29 up:annotation ?annotation30 . ?annotation30 faldo:begin ?pfsb31 ; faldo:end ?pfse32 ; up:ligand ?ligand33 ; rdf:type up:Binding_Site_Annotation . ?pfsb31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?ligand33 rdfs:subClassOf chebi:57540 . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; up:ligand ?ligand40 ; rdf:type up:Binding_Site_Annotation . ?pfsb38 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand40 rdfs:subClassOf ?molecule41 . ?molecule41 rdfs:label 'substrate' . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf ?molecule49 . ?molecule49 rdfs:label 'substrate' . ?pfs52 up:annotation ?annotation53 . ?annotation53 faldo:begin ?pfsb54 ; faldo:end ?pfse55 ; up:ligand ?ligand56 ; rdf:type up:Binding_Site_Annotation . ?pfsb54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfse55 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?ligand56 rdfs:subClassOf chebi:57540 . ?pfs59 up:annotation ?annotation60 . ?annotation60 faldo:begin ?pfsb61 ; faldo:end ?pfse62 ; up:ligand ?ligand63 ; rdf:type up:Binding_Site_Annotation . ?pfsb61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?pfse62 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?ligand63 rdfs:subClassOf chebi:57540 . _:562132 a rdf:Statement ; up:attribution _:562106 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:562133 a rdf:Statement ; up:attribution _:562107 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:562134 a rdf:Statement ; up:attribution _:562108 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:562135 a rdf:Statement ; up:attribution _:562109 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:562136 a rdf:Statement ; up:attribution _:562110 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:562137 a rdf:Statement ; up:attribution _:562111 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:562138 a rdf:Statement ; up:attribution _:562112 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:562139 a rdf:Statement ; up:attribution _:562113 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:562140 a rdf:Statement ; up:attribution _:562114 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:562141 a rdf:Statement ; up:attribution _:562115 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:562142 a rdf:Statement ; up:attribution _:562116 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:562143 a rdf:Statement ; up:attribution _:562117 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:28 . _:562144 a rdf:Statement ; up:attribution _:562118 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:57 . _:562145 a rdf:Statement ; up:attribution _:562119 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:520 . _:562146 a rdf:Statement ; up:attribution _:562120 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:521 . _:562147 a rdf:Statement ; up:attribution _:562121 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:562148 a rdf:Statement ; up:attribution _:562122 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0030266 . _:562149 a rdf:Statement ; up:attribution _:562123 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004764 . _:562150 a rdf:Statement ; up:attribution _:562124 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009423 . _:562151 a rdf:Statement ; up:source unirule:MF_01578 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:562152 a rdf:Statement ; up:attribution _:562125 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:562153 a rdf:Statement ; up:source unirule:MF_01578 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:562154 a rdf:Statement ; up:attribution _:562126 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:562155 a rdf:Statement ; up:source unirule:MF_01578 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:562156 a rdf:Statement ; up:attribution _:562127 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:562157 a rdf:Statement ; up:source unirule:MF_01578 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:562158 a rdf:Statement ; up:attribution _:562128 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:562159 a rdf:Statement ; up:source unirule:MF_01578 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:562160 a rdf:Statement ; up:attribution _:562129 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:562161 a rdf:Statement ; up:source unirule:MF_01578 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:562162 a rdf:Statement ; up:attribution _:562130 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:562163 a rdf:Statement ; up:source unirule:MF_01578 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:562164 a rdf:Statement ; up:attribution _:562131 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01578 #Rule MF_01578 Created by:rivoire on:2007-02-23 Modified by:crivoire on:2024-03-12 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01578 . ?thisOrganism rdfs:subClassOf+ taxon:91347 . BIND(URI(CONCAT(STR(?this), '#MF_01578a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01578a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01578a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01578a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01578a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01578a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_01578a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_01578a12')) AS ?annotation12) . BIND(URI(CONCAT(STR(?this), '#MF_01578a13')) AS ?annotation13) . BIND(URI(CONCAT(STR(?this), '#MF_01578a14')) AS ?annotation14) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionP0A6D571 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D573 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6D5MF_0157866 . ?templateMotifSequenceMatchRegionP0A6D571 faldo:begin ?templateMotifSequenceMatchBeginP0A6D572 . ?templateMotifSequenceMatchBeginP0A6D572 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D567 ; faldo:reference isoform:P0A6D5-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6D573 edam:has_input signature:MF_01578 ; rdf:type edam:operation_0300 . ?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0157877 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6D5MF_0157868 . ?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0157876 . ?targetMotifMatchRegionMatchBeginMF_0157876 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0157869 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0157877 edam:has_input signature:MF_01578 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_0157866, 1, (STRLEN(?templateMotifCigarP0A6D5MF_0157866) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_0157866, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP0A6D567) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_0157868, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_0157868) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_0157868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_0157868, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_0157868) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_0157868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) . BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0157869) - 1) AS ?thisPositionOn20) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_0157866, 1, (STRLEN(?templateMotifCigarP0A6D5MF_0157866) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_0157866, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionP0A6D567) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_0157868, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_0157868) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_0157868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_0157868, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_0157868) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_0157868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) . BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0157869) - 1) AS ?thisPositionOn21) . BIND(?this AS ?pfs1t82) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)) = 'AGGA')) . BIND(URI(CONCAT(STR(?this), '#MF_01578a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP0A6D588 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D590 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6D5MF_0157883 . ?templateMotifSequenceMatchRegionP0A6D588 faldo:begin ?templateMotifSequenceMatchBeginP0A6D589 . ?templateMotifSequenceMatchBeginP0A6D589 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D584 ; faldo:reference isoform:P0A6D5-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6D590 edam:has_input signature:MF_01578 ; rdf:type edam:operation_0300 . ?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0157894 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6D5MF_0157885 . ?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0157893 . ?targetMotifMatchRegionMatchBeginMF_0157893 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0157886 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0157894 edam:has_input signature:MF_01578 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_0157883, 1, (STRLEN(?templateMotifCigarP0A6D5MF_0157883) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_0157883, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionP0A6D584) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_0157885, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_0157885) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_0157885, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_0157885, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_0157885) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_0157885, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) . BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0157886) - 1) AS ?thisPositionOn27) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_0157883, 1, (STRLEN(?templateMotifCigarP0A6D5MF_0157883) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_0157883, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionP0A6D584) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_0157885, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_0157885) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_0157885, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_0157885, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_0157885) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_0157885, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) . BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0157886) - 1) AS ?thisPositionOn28) . BIND(?this AS ?pfs1t99) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) . FILTER (REGEX('NR[RK]D', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) . BIND(URI(CONCAT(STR(?this), '#MF_01578a23')) AS ?annotation23) . BIND(?this AS ?pfs22) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionP0A6D5105 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D5107 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6D5MF_01578100 . ?templateMotifSequenceMatchRegionP0A6D5105 faldo:begin ?templateMotifSequenceMatchBeginP0A6D5106 . ?templateMotifSequenceMatchBeginP0A6D5106 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D5101 ; faldo:reference isoform:P0A6D5-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6D5107 edam:has_input signature:MF_01578 ; rdf:type edam:operation_0300 . ?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01578111 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6D5MF_01578102 . ?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01578110 . ?targetMotifMatchRegionMatchBeginMF_01578110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01578103 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01578111 edam:has_input signature:MF_01578 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_01578100, 1, (STRLEN(?templateMotifCigarP0A6D5MF_01578100) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_01578100, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionP0A6D5101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578102, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578102) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578102, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578102) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) . BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01578103) - 1) AS ?thisPositionOn34) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_01578100, 1, (STRLEN(?templateMotifCigarP0A6D5MF_01578100) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_01578100, CONCAT('^(?:-*[^-]){', STR(((235 - ?templateMotifSequenceMatchBeginPositionP0A6D5101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578102, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578102) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578102, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578102) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) . BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01578103) - 1) AS ?thisPositionOn35) . BIND(?this AS ?pfs1t116) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) . FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)N', SUBSTR(?thisSequenceValue, ?thisPositionOn34, (?thisPositionOn35 - ?thisPositionOn34)))) . BIND(URI(CONCAT(STR(?this), '#MF_01578a30')) AS ?annotation30) . BIND(?this AS ?pfs29) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP0A6D5122 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D5124 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6D5MF_01578117 . ?templateMotifSequenceMatchRegionP0A6D5122 faldo:begin ?templateMotifSequenceMatchBeginP0A6D5123 . ?templateMotifSequenceMatchBeginP0A6D5123 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D5118 ; faldo:reference isoform:P0A6D5-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6D5124 edam:has_input signature:MF_01578 ; rdf:type edam:operation_0300 . ?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01578128 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6D5MF_01578119 . ?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01578127 . ?targetMotifMatchRegionMatchBeginMF_01578127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01578120 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01578128 edam:has_input signature:MF_01578 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_01578117, 1, (STRLEN(?templateMotifCigarP0A6D5MF_01578117) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_01578117, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionP0A6D5118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578119, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578119) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578119, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578119) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) . BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01578120) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t131) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse39) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01578a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionP0A6D5137 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D5139 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6D5MF_01578132 . ?templateMotifSequenceMatchRegionP0A6D5137 faldo:begin ?templateMotifSequenceMatchBeginP0A6D5138 . ?templateMotifSequenceMatchBeginP0A6D5138 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D5133 ; faldo:reference isoform:P0A6D5-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6D5139 edam:has_input signature:MF_01578 ; rdf:type edam:operation_0300 . ?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01578143 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6D5MF_01578134 . ?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01578142 . ?targetMotifMatchRegionMatchBeginMF_01578142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01578135 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01578143 edam:has_input signature:MF_01578 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_01578132, 1, (STRLEN(?templateMotifCigarP0A6D5MF_01578132) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_01578132, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionP0A6D5133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578134, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578134, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) . BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_01578135) - 1) AS ?thisPositionOn50) . BIND(?thisPositionOn50 AS ?thisPositionOn51) . BIND(?this AS ?pfs1t146) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01578a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionP0A6D5152 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D5154 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6D5MF_01578147 . ?templateMotifSequenceMatchRegionP0A6D5152 faldo:begin ?templateMotifSequenceMatchBeginP0A6D5153 . ?templateMotifSequenceMatchBeginP0A6D5153 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D5148 ; faldo:reference isoform:P0A6D5-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6D5154 edam:has_input signature:MF_01578 ; rdf:type edam:operation_0300 . ?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01578158 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6D5MF_01578149 . ?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01578157 . ?targetMotifMatchRegionMatchBeginMF_01578157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01578150 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01578158 edam:has_input signature:MF_01578 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_01578147, 1, (STRLEN(?templateMotifCigarP0A6D5MF_01578147) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_01578147, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP0A6D5148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578149, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578149) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578149, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578149) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) . BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_01578150) - 1) AS ?thisPositionOn57) . BIND(?thisPositionOn57 AS ?thisPositionOn58) . BIND(?this AS ?pfs1t161) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01578a53')) AS ?annotation53) . BIND(?this AS ?pfs52) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch166 faldo:location ?templateMotifSequenceMatchRegionP0A6D5167 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D5169 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6D5MF_01578162 . ?templateMotifSequenceMatchRegionP0A6D5167 faldo:begin ?templateMotifSequenceMatchBeginP0A6D5168 . ?templateMotifSequenceMatchBeginP0A6D5168 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D5163 ; faldo:reference isoform:P0A6D5-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6D5169 edam:has_input signature:MF_01578 ; rdf:type edam:operation_0300 . ?targetMotifMatch170 faldo:location ?targetMotifMatchRegionMatch171 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01578173 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6D5MF_01578164 . ?targetMotifMatchRegionMatch171 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01578172 . ?targetMotifMatchRegionMatchBeginMF_01578172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01578165 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01578173 edam:has_input signature:MF_01578 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D5MF_01578162, 1, (STRLEN(?templateMotifCigarP0A6D5MF_01578162) - STRLEN(REPLACE(?templateMotifCigarP0A6D5MF_01578162, CONCAT('^(?:-*[^-]){', STR(((255 - ?templateMotifSequenceMatchBeginPositionP0A6D5163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578164, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578164) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D5MF_01578164, 1, (STRLEN(?targetMotifMatchCigarP0A6D5MF_01578164) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D5MF_01578164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) . BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_01578165) - 1) AS ?thisPositionOn64) . BIND(?thisPositionOn64 AS ?thisPositionOn65) . BIND(?this AS ?pfs1t176) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_01578a60')) AS ?annotation60) . BIND(?this AS ?pfs59) . } }