CONSTRUCT { _:655414 up:source unirule:MF_01873 . _:655415 up:source unirule:MF_01873 . _:655416 up:source unirule:MF_01873 . _:655417 up:source unirule:MF_01873 . _:655418 up:source unirule:MF_01873 . _:655419 up:source unirule:MF_01873 . _:655420 up:source unirule:MF_01873 . _:655421 up:source unirule:MF_01873 . _:655422 up:source unirule:MF_01873 . _:655423 up:source unirule:MF_01873 . _:655424 up:source unirule:MF_01873 . _:655425 up:source unirule:MF_01873 . _:655426 up:source unirule:MF_01873 . _:655427 up:source unirule:MF_01873 . _:655428 up:source unirule:MF_01873 . _:655429 up:source unirule:MF_01873 . _:655430 up:source unirule:MF_01873 . _:655431 up:source unirule:MF_01873 . _:655432 up:source unirule:MF_01873 . _:655433 up:source unirule:MF_01873 . _:655434 up:source unirule:MF_01873 . _:655435 up:source unirule:MF_01873 . _:655436 up:source unirule:MF_01873 . _:655437 up:source unirule:MF_01873 . _:655438 up:source unirule:MF_01873 . _:655439 up:source unirule:MF_01873 . _:655440 up:source unirule:MF_01873 . _:655441 up:source unirule:MF_01873 . _:655442 up:source unirule:MF_01873 . _:655443 up:source unirule:MF_01873 . _:655444 up:source unirule:MF_01873 . _:655445 up:source unirule:MF_01873 . _:655446 up:source unirule:MF_01873 . _:655447 up:source unirule:MF_01873 . _:655448 up:source unirule:MF_01873 . ?this up:alternativeName ?name1 , ?name2 ; up:annotation ?annotation4 , ?annotation5 , ?annotation7 , ?annotation9 , ?annotation10 ; up:classifiedWith GO:0005737 , GO:0016433 , GO:0019843 , GO:0070475 , keyword:1015 , keyword:46 , keyword:489 , keyword:698 , keyword:808 , keyword:949 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '2.1.1.224' ; up:fullName 'Ribosomal RNA large subunit methyltransferase Cfr' ; rdf:type up:Structured_Name . ?name1 up:fullName '23S rRNA (adenine(2503)-C(8))-methyltransferase' ; rdf:type up:Structured_Name . ?name2 up:fullName '23S rRNA m8A2503 methyltransferase' ; rdf:type up:Structured_Name . ?gene3 skos:prefLabel 'cfr' . ?annotation4 a up:Function_Annotation ; rdfs:comment 'Specifically methylates position 8 of adenine 2503 in 23S rRNA. Confers resistance to some classes of antibiotics.' . ?annotation5 up:activity ?activity6 ; rdf:type up:Catalytic_Activity_Annotation . ?activity6 up:catalyticActivity <http://rdf.rhea-db.org/42632>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.1.1.224>. ?annotation7 a up:Subcellular_Location_Annotation . ?annotation7li8 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation9 a up:Annotation ; rdfs:comment 'Reaction proceeds by a ping-pong mechanism involving intermediate methylation of a conserved cysteine residue.' . ?annotation10 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the radical SAM superfamily. RlmN family. Cfr subfamily.' . ?case11 up:classifiedWith GO:0051539 , keyword:408 , keyword:411 , keyword:479 , keyword:4 . ?pfs12 up:annotation ?annotation13 , ?annotation19 , ?annotation25 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; up:ligand ?ligand16 ; rdf:type up:Binding_Site_Annotation . ?pfsb14 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?ligand16 rdfs:subClassOf chebi:49883 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; up:ligand ?ligand22 ; rdf:type up:Binding_Site_Annotation . ?pfsb20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?ligand22 rdfs:subClassOf chebi:49883 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; up:ligand ?ligand28 ; rdf:type up:Binding_Site_Annotation . ?pfsb26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?ligand28 rdfs:subClassOf chebi:49883 . ?pfs31 up:annotation ?annotation32 . ?annotation32 faldo:begin ?pfsb33 ; faldo:end ?pfse34 ; up:ligand ?ligand35 ; rdf:type up:Binding_Site_Annotation . ?pfsb33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?ligand35 rdfs:subClassOf chebi:59789 . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; up:ligand ?ligand42 ; rdf:type up:Binding_Site_Annotation . ?pfsb40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?ligand42 rdfs:subClassOf chebi:59789 . ?pfs45 up:annotation ?annotation46 . ?annotation46 faldo:begin ?pfsb47 ; faldo:end ?pfse48 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor' . ?pfsb47 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse48 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'S-methylcysteine intermediate' . ?pfsb53 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfs57 up:annotation ?annotation58 . ?annotation58 faldo:begin ?pfsb59 ; faldo:end ?pfse60 ; up:ligand ?ligand61 ; rdf:type up:Binding_Site_Annotation . ?pfsb59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?pfse60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?ligand61 rdfs:subClassOf chebi:59789 . ?pfs64 up:annotation ?annotation65 . ?annotation65 faldo:begin ?pfsb66 ; faldo:end ?pfse67 ; up:ligand ?ligand68 ; rdf:type up:Binding_Site_Annotation . ?pfsb66 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?pfse67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?ligand68 rdfs:subClassOf chebi:59789 . ?pfs71 up:annotation ?annotation72 . ?annotation72 faldo:begin ?pfsb73 ; faldo:end ?pfse74 ; rdf:type up:Disulfide_Bond_Annotation ; rdfs:comment '(transient)' . ?pfsb73 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?pfse74 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . _:655449 a rdf:Statement ; up:attribution _:655414 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:655450 a rdf:Statement ; up:attribution _:655415 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:655451 a rdf:Statement ; up:attribution _:655416 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:655452 a rdf:Statement ; up:attribution _:655417 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:655453 a rdf:Statement ; up:attribution _:655418 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:655454 a rdf:Statement ; up:attribution _:655419 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:655455 a rdf:Statement ; up:attribution _:655420 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:655456 a rdf:Statement ; up:attribution _:655421 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:655457 a rdf:Statement ; up:attribution _:655422 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:655458 a rdf:Statement ; up:attribution _:655423 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:46 . _:655459 a rdf:Statement ; up:attribution _:655424 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:655460 a rdf:Statement ; up:attribution _:655425 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1015 . _:655461 a rdf:Statement ; up:attribution _:655426 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:489 . _:655462 a rdf:Statement ; up:attribution _:655427 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:698 . _:655463 a rdf:Statement ; up:attribution _:655428 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:949 . _:655464 a rdf:Statement ; up:attribution _:655429 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:655465 a rdf:Statement ; up:attribution _:655430 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019843 . _:655466 a rdf:Statement ; up:attribution _:655431 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016433 . _:655467 a rdf:Statement ; up:attribution _:655432 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0070475 . _:655468 a rdf:Statement ; up:attribution _:655433 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:655469 a rdf:Statement ; up:attribution _:655434 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object keyword:4 . _:655470 a rdf:Statement ; up:attribution _:655435 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:655471 a rdf:Statement ; up:attribution _:655436 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object keyword:411 . _:655472 a rdf:Statement ; up:attribution _:655437 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:655473 a rdf:Statement ; up:attribution _:655438 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object GO:0051539 . _:655474 a rdf:Statement ; up:source unirule:MF_01873 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:655475 a rdf:Statement ; up:attribution _:655439 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:655476 a rdf:Statement ; up:source unirule:MF_01873 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:655477 a rdf:Statement ; up:attribution _:655440 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:655478 a rdf:Statement ; up:source unirule:MF_01873 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:655479 a rdf:Statement ; up:attribution _:655441 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:655480 a rdf:Statement ; up:source unirule:MF_01873 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:655481 a rdf:Statement ; up:attribution _:655442 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:655482 a rdf:Statement ; up:source unirule:MF_01873 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:655483 a rdf:Statement ; up:attribution _:655443 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:655484 a rdf:Statement ; up:source unirule:MF_01873 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:655485 a rdf:Statement ; up:attribution _:655444 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:655486 a rdf:Statement ; up:source unirule:MF_01873 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:655487 a rdf:Statement ; up:attribution _:655445 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:655488 a rdf:Statement ; up:source unirule:MF_01873 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:655489 a rdf:Statement ; up:attribution _:655446 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:655490 a rdf:Statement ; up:source unirule:MF_01873 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:655491 a rdf:Statement ; up:attribution _:655447 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:655492 a rdf:Statement ; up:source unirule:MF_01873 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:655493 a rdf:Statement ; up:attribution _:655448 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01873 #Rule MF_01873 Created by:? on:2009-10-15 Modified by:Edouard de Castro on:2024-09-02 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01873 . ?thisOrganism rdfs:subClassOf+ taxon:1239 . BIND(URI(CONCAT(STR(?this), '#MF_01873a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01873a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01873a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_01873a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01873a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01873a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01873a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_01873a10')) AS ?annotation10) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionQ9FBG482 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9FBG484 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9FBG4MF_0187377 . ?templateMotifSequenceMatchRegionQ9FBG482 faldo:begin ?templateMotifSequenceMatchBeginQ9FBG483 . ?templateMotifSequenceMatchBeginQ9FBG483 faldo:position ?templateMotifSequenceMatchBeginPositionQ9FBG478 ; faldo:reference isoform:Q9FBG4-1 . ?templateMotifSequenceProfileAlignmentOperationQ9FBG484 edam:has_input signature:MF_01873 ; rdf:type edam:operation_0300 . ?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0187388 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9FBG4MF_0187379 . ?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0187387 . ?targetMotifMatchRegionMatchBeginMF_0187387 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0187380 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0187388 edam:has_input signature:MF_01873 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_0187377, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_0187377) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_0187377, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionQ9FBG478) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_0187379, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_0187379) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_0187379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_0187379, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_0187379) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_0187379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) . BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0187380) - 1) AS ?thisPositionOn17) . BIND(?thisPositionOn17 AS ?thisPositionOn18) . BIND(?this AS ?pfs1t91) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_0187377, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_0187377) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_0187377, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionQ9FBG478) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_0187379, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_0187379) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_0187379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_0187379, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_0187379) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_0187379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) . BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0187380) - 1) AS ?thisPositionOn23) . BIND(?thisPositionOn23 AS ?thisPositionOn24) . BIND(?this AS ?pfs1t94) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_0187377, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_0187377) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_0187377, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionQ9FBG478) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_0187379, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_0187379) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_0187379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_0187379, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_0187379) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_0187379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) . BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0187380) - 1) AS ?thisPositionOn29) . BIND(?thisPositionOn29 AS ?thisPositionOn30) . BIND(?this AS ?pfs1t97) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) . BIND(?this AS ?pfs12) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionQ9FBG4103 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9FBG4105 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9FBG4MF_0187398 . ?templateMotifSequenceMatchRegionQ9FBG4103 faldo:begin ?templateMotifSequenceMatchBeginQ9FBG4104 . ?templateMotifSequenceMatchBeginQ9FBG4104 faldo:position ?templateMotifSequenceMatchBeginPositionQ9FBG499 ; faldo:reference isoform:Q9FBG4-1 . ?templateMotifSequenceProfileAlignmentOperationQ9FBG4105 edam:has_input signature:MF_01873 ; rdf:type edam:operation_0300 . ?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01873109 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9FBG4MF_01873100 . ?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01873108 . ?targetMotifMatchRegionMatchBeginMF_01873108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01873101 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01873109 edam:has_input signature:MF_01873 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_0187398, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_0187398) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_0187398, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionQ9FBG499) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873100, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873100, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) . BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_01873101) - 1) AS ?thisPositionOn36) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_0187398, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_0187398) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_0187398, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionQ9FBG499) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873100, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873100, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) . BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01873101) - 1) AS ?thisPositionOn37) . BIND(?this AS ?pfs2t114) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)) = 'GE')) . BIND(URI(CONCAT(STR(?this), '#MF_01873a32')) AS ?annotation32) . BIND(?this AS ?pfs31) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionQ9FBG4120 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9FBG4122 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9FBG4MF_01873115 . ?templateMotifSequenceMatchRegionQ9FBG4120 faldo:begin ?templateMotifSequenceMatchBeginQ9FBG4121 . ?templateMotifSequenceMatchBeginQ9FBG4121 faldo:position ?templateMotifSequenceMatchBeginPositionQ9FBG4116 ; faldo:reference isoform:Q9FBG4-1 . ?templateMotifSequenceProfileAlignmentOperationQ9FBG4122 edam:has_input signature:MF_01873 ; rdf:type edam:operation_0300 . ?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01873126 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9FBG4MF_01873117 . ?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01873125 . ?targetMotifMatchRegionMatchBeginMF_01873125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01873118 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01873126 edam:has_input signature:MF_01873 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_01873115, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_01873115) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_01873115, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionQ9FBG4116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873117, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873117, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) . BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_01873118) - 1) AS ?thisPositionOn43) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_01873115, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_01873115) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_01873115, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionQ9FBG4116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873117, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873117, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) . BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01873118) - 1) AS ?thisPositionOn44) . BIND(?this AS ?pfs2t131) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) . FILTER (REGEX('S[ARNDCQEGHILKMFPSTWYVBZJUOX]H', SUBSTR(?thisSequenceValue, ?thisPositionOn43, (?thisPositionOn44 - ?thisPositionOn43)))) . BIND(URI(CONCAT(STR(?this), '#MF_01873a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionQ9FBG4137 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9FBG4139 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9FBG4MF_01873132 . ?templateMotifSequenceMatchRegionQ9FBG4137 faldo:begin ?templateMotifSequenceMatchBeginQ9FBG4138 . ?templateMotifSequenceMatchBeginQ9FBG4138 faldo:position ?templateMotifSequenceMatchBeginPositionQ9FBG4133 ; faldo:reference isoform:Q9FBG4-1 . ?templateMotifSequenceProfileAlignmentOperationQ9FBG4139 edam:has_input signature:MF_01873 ; rdf:type edam:operation_0300 . ?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01873143 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9FBG4MF_01873134 . ?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01873142 . ?targetMotifMatchRegionMatchBeginMF_01873142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01873135 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01873143 edam:has_input signature:MF_01873 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_01873132, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_01873132) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_01873132, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionQ9FBG4133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873134, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873134) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873134, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873134) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) . BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_01873135) - 1) AS ?thisPositionOn49) . BIND(?thisPositionOn49 AS ?thisPositionOn50) . BIND(?this AS ?pfs2t146) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb47) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse48) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01873a46')) AS ?annotation46) . BIND(?this AS ?pfs45) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionQ9FBG4152 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9FBG4154 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9FBG4MF_01873147 . ?templateMotifSequenceMatchRegionQ9FBG4152 faldo:begin ?templateMotifSequenceMatchBeginQ9FBG4153 . ?templateMotifSequenceMatchBeginQ9FBG4153 faldo:position ?templateMotifSequenceMatchBeginPositionQ9FBG4148 ; faldo:reference isoform:Q9FBG4-1 . ?templateMotifSequenceProfileAlignmentOperationQ9FBG4154 edam:has_input signature:MF_01873 ; rdf:type edam:operation_0300 . ?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01873158 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9FBG4MF_01873149 . ?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01873157 . ?targetMotifMatchRegionMatchBeginMF_01873157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01873150 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01873158 edam:has_input signature:MF_01873 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_01873147, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_01873147) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_01873147, CONCAT('^(?:-*[^-]){', STR(((338 - ?templateMotifSequenceMatchBeginPositionQ9FBG4148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873149, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873149) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873149, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873149) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) . BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_01873150) - 1) AS ?thisPositionOn55) . BIND(?thisPositionOn55 AS ?thisPositionOn56) . BIND(?this AS ?pfs2t161) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse54) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01873a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch166 faldo:location ?templateMotifSequenceMatchRegionQ9FBG4167 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9FBG4169 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9FBG4MF_01873162 . ?templateMotifSequenceMatchRegionQ9FBG4167 faldo:begin ?templateMotifSequenceMatchBeginQ9FBG4168 . ?templateMotifSequenceMatchBeginQ9FBG4168 faldo:position ?templateMotifSequenceMatchBeginPositionQ9FBG4163 ; faldo:reference isoform:Q9FBG4-1 . ?templateMotifSequenceProfileAlignmentOperationQ9FBG4169 edam:has_input signature:MF_01873 ; rdf:type edam:operation_0300 . ?targetMotifMatch170 faldo:location ?targetMotifMatchRegionMatch171 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01873173 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9FBG4MF_01873164 . ?targetMotifMatchRegionMatch171 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01873172 . ?targetMotifMatchRegionMatchBeginMF_01873172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01873165 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01873173 edam:has_input signature:MF_01873 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_01873162, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_01873162) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_01873162, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionQ9FBG4163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873164, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873164) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873164, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873164) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) . BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_01873165) - 1) AS ?thisPositionOn62) . BIND(?thisPositionOn62 AS ?thisPositionOn63) . BIND(?this AS ?pfs2t176) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_01873a58')) AS ?annotation58) . BIND(?this AS ?pfs57) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch181 faldo:location ?templateMotifSequenceMatchRegionQ9FBG4182 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9FBG4184 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9FBG4MF_01873177 . ?templateMotifSequenceMatchRegionQ9FBG4182 faldo:begin ?templateMotifSequenceMatchBeginQ9FBG4183 . ?templateMotifSequenceMatchBeginQ9FBG4183 faldo:position ?templateMotifSequenceMatchBeginPositionQ9FBG4178 ; faldo:reference isoform:Q9FBG4-1 . ?templateMotifSequenceProfileAlignmentOperationQ9FBG4184 edam:has_input signature:MF_01873 ; rdf:type edam:operation_0300 . ?targetMotifMatch185 faldo:location ?targetMotifMatchRegionMatch186 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01873188 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9FBG4MF_01873179 . ?targetMotifMatchRegionMatch186 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01873187 . ?targetMotifMatchRegionMatchBeginMF_01873187 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01873180 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01873188 edam:has_input signature:MF_01873 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_01873177, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_01873177) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_01873177, CONCAT('^(?:-*[^-]){', STR(((293 - ?templateMotifSequenceMatchBeginPositionQ9FBG4178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873179, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873179) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873179, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873179) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) . BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_01873180) - 1) AS ?thisPositionOn69) . BIND(?thisPositionOn69 AS ?thisPositionOn70) . BIND(?this AS ?pfs2t191) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_01873a65')) AS ?annotation65) . BIND(?this AS ?pfs64) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionQ9FBG4197 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9FBG4199 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9FBG4MF_01873192 . ?templateMotifSequenceMatchRegionQ9FBG4197 faldo:begin ?templateMotifSequenceMatchBeginQ9FBG4198 . ?templateMotifSequenceMatchBeginQ9FBG4198 faldo:position ?templateMotifSequenceMatchBeginPositionQ9FBG4193 ; faldo:reference isoform:Q9FBG4-1 . ?templateMotifSequenceProfileAlignmentOperationQ9FBG4199 edam:has_input signature:MF_01873 ; rdf:type edam:operation_0300 . ?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01873203 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9FBG4MF_01873194 . ?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01873202 . ?targetMotifMatchRegionMatchBeginMF_01873202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01873195 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01873203 edam:has_input signature:MF_01873 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_01873192, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_01873192) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_01873192, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionQ9FBG4193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873194, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873194) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873194, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873194) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) . BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_01873195) - 1) AS ?thisPositionOn75) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9FBG4MF_01873192, 1, (STRLEN(?templateMotifCigarQ9FBG4MF_01873192) - STRLEN(REPLACE(?templateMotifCigarQ9FBG4MF_01873192, CONCAT('^(?:-*[^-]){', STR(((338 - ?templateMotifSequenceMatchBeginPositionQ9FBG4193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1206) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873194, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873194) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9FBG4MF_01873194, 1, (STRLEN(?targetMotifMatchCigarQ9FBG4MF_01873194) - STRLEN(REPLACE(?targetMotifMatchCigarQ9FBG4MF_01873194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), '')))), '[^-]', ''))) AS ?step2207) . BIND(((?step2207 + ?targetMotifMatchRegionMatchBeginPositionMF_01873195) - 1) AS ?thisPositionOn76) . BIND(?this AS ?pfs2t208) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse74) . FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn75, (?thisPositionOn76 - ?thisPositionOn75)))) . BIND(URI(CONCAT(STR(?this), '#MF_01873a72')) AS ?annotation72) . BIND(?this AS ?pfs71) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag209) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag209, ?UNBOUND_VARIABLE) AS ?case11) . }