CONSTRUCT { _:651791 up:source unirule:MF_01886 . _:651792 up:source unirule:MF_01886 . _:651793 up:source unirule:MF_01886 . _:651794 up:source unirule:MF_01886 . _:651795 up:source unirule:MF_01886 . _:651796 up:source unirule:MF_01886 . _:651797 up:source unirule:MF_01886 . _:651798 up:source unirule:MF_01886 . _:651799 up:source unirule:MF_01886 . _:651800 up:source unirule:MF_01886 . _:651801 up:source unirule:MF_01886 . _:651802 up:source unirule:MF_01886 . _:651803 up:source unirule:MF_01886 . _:651804 up:source unirule:MF_01886 . _:651805 up:source unirule:MF_01886 . _:651806 up:source unirule:MF_01886 . _:651807 up:source unirule:MF_01886 . _:651808 up:source unirule:MF_01886 . _:651809 up:source unirule:MF_01886 . _:651810 up:source unirule:MF_01886 . _:651811 up:source unirule:MF_01886 . _:651812 up:source unirule:MF_01886 . _:651813 up:source unirule:MF_01886 . _:651814 up:source unirule:MF_01886 . _:651815 up:source unirule:MF_01886 . _:651816 up:source unirule:MF_01886 . _:651817 up:source unirule:MF_01886 . _:651818 up:source unirule:MF_01886 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation7 ; up:classifiedWith GO:0000049 , GO:0002101 , GO:0005524 , GO:0005737 , GO:0051391 , GO:0051392 , keyword:12 , keyword:547 , keyword:67 , keyword:694 , keyword:808 , keyword:819 , keyword:820 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '2.3.1.193' ; up:fullName 'tRNA(Met) cytidine acetyltransferase TmcA' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'tmcA' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/43788>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.3.1.193>. ?annotation5 a up:Subcellular_Location_Annotation . ?annotation5li6 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation7 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the TmcA family.' . ?pfs8 up:annotation ?annotation9 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; up:ligand ?ligand12 ; rdf:type up:Binding_Site_Annotation . ?pfsb10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?ligand12 rdfs:subClassOf chebi:30616 . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; up:ligand ?ligand19 ; rdf:type up:Binding_Site_Annotation . ?pfsb17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?ligand19 rdfs:subClassOf chebi:30616 . ?pfs22 up:annotation ?annotation23 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; up:ligand ?ligand26 ; rdf:type up:Binding_Site_Annotation . ?pfsb24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?ligand26 rdfs:subClassOf chebi:57288 . ?pfs29 up:annotation ?annotation30 . ?annotation30 faldo:begin ?pfsb31 ; faldo:end ?pfse32 ; up:ligand ?ligand33 ; rdf:type up:Binding_Site_Annotation . ?pfsb31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?ligand33 rdfs:subClassOf chebi:57288 . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; up:ligand ?ligand40 ; rdf:type up:Binding_Site_Annotation . ?pfsb38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?ligand40 rdfs:subClassOf chebi:30616 . ?pfs43 up:annotation ?annotation44 . ?annotation44 faldo:begin ?pfsb45 ; faldo:end ?pfse46 ; up:ligand ?ligand47 ; rdf:type up:Binding_Site_Annotation . ?pfsb45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?ligand47 rdfs:subClassOf chebi:30616 . ?pfs50 up:annotation ?annotation51 . ?annotation51 faldo:begin ?pfsb52 ; faldo:end ?pfse53 ; up:ligand ?ligand54 ; rdf:type up:Binding_Site_Annotation . ?pfsb52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?pfse53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?ligand54 rdfs:subClassOf chebi:57288 . ?pfs57 up:annotation ?annotation58 . ?annotation58 faldo:begin ?pfsb59 ; faldo:end ?pfse60 ; up:ligand ?ligand61 ; rdf:type up:Binding_Site_Annotation . ?pfsb59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?pfse60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?ligand61 rdfs:subClassOf chebi:57288 . _:651819 a rdf:Statement ; up:attribution _:651791 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:651820 a rdf:Statement ; up:attribution _:651792 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:651821 a rdf:Statement ; up:attribution _:651793 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:651822 a rdf:Statement ; up:attribution _:651794 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:651823 a rdf:Statement ; up:attribution _:651795 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:651824 a rdf:Statement ; up:attribution _:651796 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:651825 a rdf:Statement ; up:attribution _:651797 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:12 . _:651826 a rdf:Statement ; up:attribution _:651798 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:651827 a rdf:Statement ; up:attribution _:651799 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:651828 a rdf:Statement ; up:attribution _:651800 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:651829 a rdf:Statement ; up:attribution _:651801 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:651830 a rdf:Statement ; up:attribution _:651802 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:651831 a rdf:Statement ; up:attribution _:651803 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:819 . _:651832 a rdf:Statement ; up:attribution _:651804 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:820 . _:651833 a rdf:Statement ; up:attribution _:651805 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:651834 a rdf:Statement ; up:attribution _:651806 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000049 . _:651835 a rdf:Statement ; up:attribution _:651807 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0051392 . _:651836 a rdf:Statement ; up:attribution _:651808 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0051391 . _:651837 a rdf:Statement ; up:attribution _:651809 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0002101 . _:651838 a rdf:Statement ; up:attribution _:651810 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:651839 a rdf:Statement ; up:source unirule:MF_01886 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:651840 a rdf:Statement ; up:attribution _:651811 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:651841 a rdf:Statement ; up:source unirule:MF_01886 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:651842 a rdf:Statement ; up:attribution _:651812 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:651843 a rdf:Statement ; up:source unirule:MF_01886 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:651844 a rdf:Statement ; up:attribution _:651813 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:651845 a rdf:Statement ; up:source unirule:MF_01886 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:651846 a rdf:Statement ; up:attribution _:651814 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:651847 a rdf:Statement ; up:source unirule:MF_01886 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:651848 a rdf:Statement ; up:attribution _:651815 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:651849 a rdf:Statement ; up:source unirule:MF_01886 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:651850 a rdf:Statement ; up:attribution _:651816 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:651851 a rdf:Statement ; up:source unirule:MF_01886 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:651852 a rdf:Statement ; up:attribution _:651817 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:651853 a rdf:Statement ; up:source unirule:MF_01886 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:651854 a rdf:Statement ; up:attribution _:651818 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01886 #Rule MF_01886 Created by:rivoire on:2010-11-04 Modified by:ecastro on:2022-11-19 VALUES ?supertaxon64 {taxon:1236 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01886 . ?thisOrganism rdfs:subClassOf+ ?supertaxon64 . BIND(URI(CONCAT(STR(?this), '#MF_01886a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01886a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01886a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01886a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01886a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionP7656270 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7656272 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76562MF_0188665 . ?templateMotifSequenceMatchRegionP7656270 faldo:begin ?templateMotifSequenceMatchBeginP7656271 . ?templateMotifSequenceMatchBeginP7656271 faldo:position ?templateMotifSequenceMatchBeginPositionP7656266 ; faldo:reference isoform:P76562-1 . ?templateMotifSequenceProfileAlignmentOperationP7656272 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . ?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0188676 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76562MF_0188667 . ?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0188675 . ?targetMotifMatchRegionMatchBeginMF_0188675 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0188668 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0188676 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_0188665, 1, (STRLEN(?templateMotifCigarP76562MF_0188665) - STRLEN(REPLACE(?templateMotifCigarP76562MF_0188665, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP7656266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_0188667, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188667) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188667, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_0188667, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188667) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188667, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) . BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0188668) - 1) AS ?thisPositionOn13) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_0188665, 1, (STRLEN(?templateMotifCigarP76562MF_0188665) - STRLEN(REPLACE(?templateMotifCigarP76562MF_0188665, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionP7656266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_0188667, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188667) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188667, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_0188667, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188667) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188667, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) . BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0188668) - 1) AS ?thisPositionOn14) . BIND(?this AS ?pfs1t81) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)) = 'GA')) . BIND(URI(CONCAT(STR(?this), '#MF_01886a9')) AS ?annotation9) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionP7656287 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7656289 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76562MF_0188682 . ?templateMotifSequenceMatchRegionP7656287 faldo:begin ?templateMotifSequenceMatchBeginP7656288 . ?templateMotifSequenceMatchBeginP7656288 faldo:position ?templateMotifSequenceMatchBeginPositionP7656283 ; faldo:reference isoform:P76562-1 . ?templateMotifSequenceProfileAlignmentOperationP7656289 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . ?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0188693 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76562MF_0188684 . ?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0188692 . ?targetMotifMatchRegionMatchBeginMF_0188692 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0188685 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0188693 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_0188682, 1, (STRLEN(?templateMotifCigarP76562MF_0188682) - STRLEN(REPLACE(?templateMotifCigarP76562MF_0188682, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionP7656283) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_0188684, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188684) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188684, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_0188684, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188684) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188684, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) . BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0188685) - 1) AS ?thisPositionOn20) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_0188682, 1, (STRLEN(?templateMotifCigarP76562MF_0188682) - STRLEN(REPLACE(?templateMotifCigarP76562MF_0188682, CONCAT('^(?:-*[^-]){', STR(((211 - ?templateMotifSequenceMatchBeginPositionP7656283) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_0188684, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188684) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188684, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_0188684, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188684) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188684, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) . BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0188685) - 1) AS ?thisPositionOn21) . BIND(?this AS ?pfs1t98) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)) = 'GRGKSALAGQ')) . BIND(URI(CONCAT(STR(?this), '#MF_01886a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionP76562104 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562106 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76562MF_0188699 . ?templateMotifSequenceMatchRegionP76562104 faldo:begin ?templateMotifSequenceMatchBeginP76562105 . ?templateMotifSequenceMatchBeginP76562105 faldo:position ?templateMotifSequenceMatchBeginPositionP76562100 ; faldo:reference isoform:P76562-1 . ?templateMotifSequenceProfileAlignmentOperationP76562106 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . ?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886110 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76562MF_01886101 . ?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886109 . ?targetMotifMatchRegionMatchBeginMF_01886109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886102 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01886110 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_0188699, 1, (STRLEN(?templateMotifCigarP76562MF_0188699) - STRLEN(REPLACE(?templateMotifCigarP76562MF_0188699, CONCAT('^(?:-*[^-]){', STR(((461 - ?templateMotifSequenceMatchBeginPositionP76562100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886101, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886101) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886101, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886101) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) . BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_01886102) - 1) AS ?thisPositionOn27) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_0188699, 1, (STRLEN(?templateMotifCigarP76562MF_0188699) - STRLEN(REPLACE(?templateMotifCigarP76562MF_0188699, CONCAT('^(?:-*[^-]){', STR(((463 - ?templateMotifSequenceMatchBeginPositionP76562100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886101, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886101) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886101, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886101) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) . BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_01886102) - 1) AS ?thisPositionOn28) . BIND(?this AS ?pfs1t115) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) . FILTER (REGEX('[IV]A[VT]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) . BIND(URI(CONCAT(STR(?this), '#MF_01886a23')) AS ?annotation23) . BIND(?this AS ?pfs22) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionP76562121 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562123 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76562MF_01886116 . ?templateMotifSequenceMatchRegionP76562121 faldo:begin ?templateMotifSequenceMatchBeginP76562122 . ?templateMotifSequenceMatchBeginP76562122 faldo:position ?templateMotifSequenceMatchBeginPositionP76562117 ; faldo:reference isoform:P76562-1 . ?templateMotifSequenceProfileAlignmentOperationP76562123 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . ?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886127 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76562MF_01886118 . ?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886126 . ?targetMotifMatchRegionMatchBeginMF_01886126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886119 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01886127 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886116, 1, (STRLEN(?templateMotifCigarP76562MF_01886116) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886116, CONCAT('^(?:-*[^-]){', STR(((468 - ?templateMotifSequenceMatchBeginPositionP76562117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886118, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886118) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886118, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886118) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) . BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_01886119) - 1) AS ?thisPositionOn34) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886116, 1, (STRLEN(?templateMotifCigarP76562MF_01886116) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886116, CONCAT('^(?:-*[^-]){', STR(((474 - ?templateMotifSequenceMatchBeginPositionP76562117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886118, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886118) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886118, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886118) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) . BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_01886119) - 1) AS ?thisPositionOn35) . BIND(?this AS ?pfs1t132) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, (?thisPositionOn35 - ?thisPositionOn34)) = 'QREGTGR')) . BIND(URI(CONCAT(STR(?this), '#MF_01886a30')) AS ?annotation30) . BIND(?this AS ?pfs29) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch137 faldo:location ?templateMotifSequenceMatchRegionP76562138 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562140 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76562MF_01886133 . ?templateMotifSequenceMatchRegionP76562138 faldo:begin ?templateMotifSequenceMatchBeginP76562139 . ?templateMotifSequenceMatchBeginP76562139 faldo:position ?templateMotifSequenceMatchBeginPositionP76562134 ; faldo:reference isoform:P76562-1 . ?templateMotifSequenceProfileAlignmentOperationP76562140 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . ?targetMotifMatch141 faldo:location ?targetMotifMatchRegionMatch142 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886144 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76562MF_01886135 . ?targetMotifMatchRegionMatch142 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886143 . ?targetMotifMatchRegionMatchBeginMF_01886143 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886136 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01886144 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886133, 1, (STRLEN(?templateMotifCigarP76562MF_01886133) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886133, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP76562134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886135, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886135) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886135, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886135) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) . BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_01886136) - 1) AS ?thisPositionOn41) . BIND(?thisPositionOn41 AS ?thisPositionOn42) . BIND(?this AS ?pfs1t147) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_01886a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionP76562153 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562155 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76562MF_01886148 . ?templateMotifSequenceMatchRegionP76562153 faldo:begin ?templateMotifSequenceMatchBeginP76562154 . ?templateMotifSequenceMatchBeginP76562154 faldo:position ?templateMotifSequenceMatchBeginPositionP76562149 ; faldo:reference isoform:P76562-1 . ?templateMotifSequenceProfileAlignmentOperationP76562155 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . ?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886159 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76562MF_01886150 . ?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886158 . ?targetMotifMatchRegionMatchBeginMF_01886158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886151 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01886159 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886148, 1, (STRLEN(?templateMotifCigarP76562MF_01886148) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886148, CONCAT('^(?:-*[^-]){', STR(((319 - ?templateMotifSequenceMatchBeginPositionP76562149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886150, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886150) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886150, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886150) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) . BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_01886151) - 1) AS ?thisPositionOn48) . BIND(?thisPositionOn48 AS ?thisPositionOn49) . BIND(?this AS ?pfs1t162) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01886a44')) AS ?annotation44) . BIND(?this AS ?pfs43) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionP76562168 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562170 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76562MF_01886163 . ?templateMotifSequenceMatchRegionP76562168 faldo:begin ?templateMotifSequenceMatchBeginP76562169 . ?templateMotifSequenceMatchBeginP76562169 faldo:position ?templateMotifSequenceMatchBeginPositionP76562164 ; faldo:reference isoform:P76562-1 . ?templateMotifSequenceProfileAlignmentOperationP76562170 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . ?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886174 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76562MF_01886165 . ?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886173 . ?targetMotifMatchRegionMatchBeginMF_01886173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886166 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01886174 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886163, 1, (STRLEN(?templateMotifCigarP76562MF_01886163) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886163, CONCAT('^(?:-*[^-]){', STR(((499 - ?templateMotifSequenceMatchBeginPositionP76562164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886165, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886165) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886165, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886165) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) . BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_01886166) - 1) AS ?thisPositionOn55) . BIND(?thisPositionOn55 AS ?thisPositionOn56) . BIND(?this AS ?pfs1t177) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01886a51')) AS ?annotation51) . BIND(?this AS ?pfs50) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP76562183 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562185 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76562MF_01886178 . ?templateMotifSequenceMatchRegionP76562183 faldo:begin ?templateMotifSequenceMatchBeginP76562184 . ?templateMotifSequenceMatchBeginP76562184 faldo:position ?templateMotifSequenceMatchBeginPositionP76562179 ; faldo:reference isoform:P76562-1 . ?templateMotifSequenceProfileAlignmentOperationP76562185 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . ?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886189 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76562MF_01886180 . ?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886188 . ?targetMotifMatchRegionMatchBeginMF_01886188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886181 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01886189 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886178, 1, (STRLEN(?templateMotifCigarP76562MF_01886178) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886178, CONCAT('^(?:-*[^-]){', STR(((506 - ?templateMotifSequenceMatchBeginPositionP76562179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886180, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886180) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886180, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886180) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) . BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_01886181) - 1) AS ?thisPositionOn62) . BIND(?thisPositionOn62 AS ?thisPositionOn63) . BIND(?this AS ?pfs1t192) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01886a58')) AS ?annotation58) . BIND(?this AS ?pfs57) . } }