CONSTRUCT { _:660402 up:source unirule:MF_01886 . _:660403 up:source unirule:MF_01886 . _:660404 up:source unirule:MF_01886 . _:660405 up:source unirule:MF_01886 . _:660406 up:source unirule:MF_01886 . _:660407 up:source unirule:MF_01886 . _:660408 up:source unirule:MF_01886 . _:660409 up:source unirule:MF_01886 . _:660410 up:source unirule:MF_01886 . _:660411 up:source unirule:MF_01886 . _:660412 up:source unirule:MF_01886 . _:660413 up:source unirule:MF_01886 . _:660414 up:source unirule:MF_01886 . _:660415 up:source unirule:MF_01886 . _:660416 up:source unirule:MF_01886 . _:660417 up:source unirule:MF_01886 . _:660418 up:source unirule:MF_01886 . _:660419 up:source unirule:MF_01886 . _:660420 up:source unirule:MF_01886 . _:660421 up:source unirule:MF_01886 . _:660422 up:source unirule:MF_01886 . _:660423 up:source unirule:MF_01886 . _:660424 up:source unirule:MF_01886 . _:660425 up:source unirule:MF_01886 . _:660426 up:source unirule:MF_01886 . _:660427 up:source unirule:MF_01886 . _:660428 up:source unirule:MF_01886 . _:660429 up:source unirule:MF_01886 . _:660430 up:source unirule:MF_01886 . _:660431 up:source unirule:MF_01886 . _:660432 up:source unirule:MF_01886 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation7 ; up:classifiedWith GO:0000049 , GO:0002101 , GO:0005524 , GO:0005737 , GO:0051391 , GO:0051392 , keyword:12 , keyword:547 , keyword:67 , keyword:694 , keyword:808 , keyword:819 , keyword:820 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '2.3.1.193' ; up:fullName 'tRNA(Met) cytidine acetyltransferase TmcA' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'tmcA' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/43788>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.3.1.193>. ?annotation5 a up:Subcellular_Location_Annotation . ?annotation5li6 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation7 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the TmcA family.' . ?case8 up:classifiedWith GO:1990882 , keyword:698 , keyword:699 . ?pfs9 up:annotation ?annotation10 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; up:ligand ?ligand13 ; rdf:type up:Binding_Site_Annotation . ?pfsb11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?ligand13 rdfs:subClassOf chebi:30616 . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:30616 . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation . ?pfsb25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf chebi:57288 . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:57288 . ?pfs37 up:annotation ?annotation38 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation . ?pfsb39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf chebi:30616 . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:30616 . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; up:ligand ?ligand55 ; rdf:type up:Binding_Site_Annotation . ?pfsb53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?ligand55 rdfs:subClassOf chebi:57288 . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf chebi:57288 . _:660433 a rdf:Statement ; up:attribution _:660402 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:660434 a rdf:Statement ; up:attribution _:660403 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:660435 a rdf:Statement ; up:attribution _:660404 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:660436 a rdf:Statement ; up:attribution _:660405 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:660437 a rdf:Statement ; up:attribution _:660406 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:660438 a rdf:Statement ; up:attribution _:660407 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:660439 a rdf:Statement ; up:attribution _:660408 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:12 . _:660440 a rdf:Statement ; up:attribution _:660409 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:660441 a rdf:Statement ; up:attribution _:660410 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:660442 a rdf:Statement ; up:attribution _:660411 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:660443 a rdf:Statement ; up:attribution _:660412 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:660444 a rdf:Statement ; up:attribution _:660413 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:660445 a rdf:Statement ; up:attribution _:660414 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:819 . _:660446 a rdf:Statement ; up:attribution _:660415 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:820 . _:660447 a rdf:Statement ; up:attribution _:660416 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:660448 a rdf:Statement ; up:attribution _:660417 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000049 . _:660449 a rdf:Statement ; up:attribution _:660418 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0051392 . _:660450 a rdf:Statement ; up:attribution _:660419 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0051391 . _:660451 a rdf:Statement ; up:attribution _:660420 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0002101 . _:660452 a rdf:Statement ; up:attribution _:660421 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:660453 a rdf:Statement ; up:attribution _:660422 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object keyword:698 . _:660454 a rdf:Statement ; up:attribution _:660423 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object keyword:699 . _:660455 a rdf:Statement ; up:attribution _:660424 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object GO:1990882 . _:660456 a rdf:Statement ; up:source unirule:MF_01886 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:660457 a rdf:Statement ; up:attribution _:660425 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:660458 a rdf:Statement ; up:source unirule:MF_01886 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:660459 a rdf:Statement ; up:attribution _:660426 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:660460 a rdf:Statement ; up:source unirule:MF_01886 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:660461 a rdf:Statement ; up:attribution _:660427 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:660462 a rdf:Statement ; up:source unirule:MF_01886 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:660463 a rdf:Statement ; up:attribution _:660428 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:660464 a rdf:Statement ; up:source unirule:MF_01886 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:660465 a rdf:Statement ; up:attribution _:660429 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:660466 a rdf:Statement ; up:source unirule:MF_01886 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:660467 a rdf:Statement ; up:attribution _:660430 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:660468 a rdf:Statement ; up:source unirule:MF_01886 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:660469 a rdf:Statement ; up:attribution _:660431 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:660470 a rdf:Statement ; up:source unirule:MF_01886 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:660471 a rdf:Statement ; up:attribution _:660432 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01886 #Rule MF_01886 Created by:? on:2010-11-04 Modified by:Catherine Rivoire on:2025-06-12 VALUES ?supertaxon65 {taxon:1236 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01886 . ?thisOrganism rdfs:subClassOf+ ?supertaxon65 . BIND(URI(CONCAT(STR(?this), '#MF_01886a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01886a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01886a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01886a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01886a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionP7656271 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7656273 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76562MF_0188666 . ?templateMotifSequenceMatchRegionP7656271 faldo:begin ?templateMotifSequenceMatchBeginP7656272 . ?templateMotifSequenceMatchBeginP7656272 faldo:position ?templateMotifSequenceMatchBeginPositionP7656267 ; faldo:reference isoform:P76562-1 . ?templateMotifSequenceProfileAlignmentOperationP7656273 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . ?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0188677 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76562MF_0188668 . ?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0188676 . ?targetMotifMatchRegionMatchBeginMF_0188676 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0188669 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0188677 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_0188666, 1, (STRLEN(?templateMotifCigarP76562MF_0188666) - STRLEN(REPLACE(?templateMotifCigarP76562MF_0188666, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP7656267) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_0188668, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188668) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188668, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_0188668, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188668) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188668, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) . BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0188669) - 1) AS ?thisPositionOn14) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_0188666, 1, (STRLEN(?templateMotifCigarP76562MF_0188666) - STRLEN(REPLACE(?templateMotifCigarP76562MF_0188666, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionP7656267) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_0188668, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188668) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188668, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_0188668, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188668) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188668, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) . BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0188669) - 1) AS ?thisPositionOn15) . BIND(?this AS ?pfs1t82) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'GA')) . BIND(URI(CONCAT(STR(?this), '#MF_01886a10')) AS ?annotation10) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP7656288 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7656290 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76562MF_0188683 . ?templateMotifSequenceMatchRegionP7656288 faldo:begin ?templateMotifSequenceMatchBeginP7656289 . ?templateMotifSequenceMatchBeginP7656289 faldo:position ?templateMotifSequenceMatchBeginPositionP7656284 ; faldo:reference isoform:P76562-1 . ?templateMotifSequenceProfileAlignmentOperationP7656290 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . ?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0188694 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76562MF_0188685 . ?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0188693 . ?targetMotifMatchRegionMatchBeginMF_0188693 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0188686 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0188694 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_0188683, 1, (STRLEN(?templateMotifCigarP76562MF_0188683) - STRLEN(REPLACE(?templateMotifCigarP76562MF_0188683, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionP7656284) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_0188685, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188685) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188685, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_0188685, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188685) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188685, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) . BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0188686) - 1) AS ?thisPositionOn21) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_0188683, 1, (STRLEN(?templateMotifCigarP76562MF_0188683) - STRLEN(REPLACE(?templateMotifCigarP76562MF_0188683, CONCAT('^(?:-*[^-]){', STR(((211 - ?templateMotifSequenceMatchBeginPositionP7656284) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_0188685, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188685) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188685, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_0188685, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188685) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188685, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) . BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0188686) - 1) AS ?thisPositionOn22) . BIND(?this AS ?pfs1t99) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)) = 'GRGKSALAGQ')) . BIND(URI(CONCAT(STR(?this), '#MF_01886a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionP76562105 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562107 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76562MF_01886100 . ?templateMotifSequenceMatchRegionP76562105 faldo:begin ?templateMotifSequenceMatchBeginP76562106 . ?templateMotifSequenceMatchBeginP76562106 faldo:position ?templateMotifSequenceMatchBeginPositionP76562101 ; faldo:reference isoform:P76562-1 . ?templateMotifSequenceProfileAlignmentOperationP76562107 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . ?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886111 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76562MF_01886102 . ?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886110 . ?targetMotifMatchRegionMatchBeginMF_01886110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886103 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01886111 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886100, 1, (STRLEN(?templateMotifCigarP76562MF_01886100) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886100, CONCAT('^(?:-*[^-]){', STR(((461 - ?templateMotifSequenceMatchBeginPositionP76562101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886102, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886102) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886102, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886102) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) . BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01886103) - 1) AS ?thisPositionOn28) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886100, 1, (STRLEN(?templateMotifCigarP76562MF_01886100) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886100, CONCAT('^(?:-*[^-]){', STR(((463 - ?templateMotifSequenceMatchBeginPositionP76562101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886102, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886102) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886102, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886102) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) . BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01886103) - 1) AS ?thisPositionOn29) . BIND(?this AS ?pfs1t116) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) . FILTER (REGEX('[IV]A[VT]', SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)))) . BIND(URI(CONCAT(STR(?this), '#MF_01886a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP76562122 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562124 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76562MF_01886117 . ?templateMotifSequenceMatchRegionP76562122 faldo:begin ?templateMotifSequenceMatchBeginP76562123 . ?templateMotifSequenceMatchBeginP76562123 faldo:position ?templateMotifSequenceMatchBeginPositionP76562118 ; faldo:reference isoform:P76562-1 . ?templateMotifSequenceProfileAlignmentOperationP76562124 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . ?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886128 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76562MF_01886119 . ?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886127 . ?targetMotifMatchRegionMatchBeginMF_01886127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886120 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01886128 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886117, 1, (STRLEN(?templateMotifCigarP76562MF_01886117) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886117, CONCAT('^(?:-*[^-]){', STR(((468 - ?templateMotifSequenceMatchBeginPositionP76562118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886119, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886119) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886119, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886119) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) . BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01886120) - 1) AS ?thisPositionOn35) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886117, 1, (STRLEN(?templateMotifCigarP76562MF_01886117) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886117, CONCAT('^(?:-*[^-]){', STR(((474 - ?templateMotifSequenceMatchBeginPositionP76562118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886119, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886119) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886119, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886119) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) . BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_01886120) - 1) AS ?thisPositionOn36) . BIND(?this AS ?pfs1t133) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, (?thisPositionOn36 - ?thisPositionOn35)) = 'QREGTGR')) . BIND(URI(CONCAT(STR(?this), '#MF_01886a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionP76562139 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562141 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76562MF_01886134 . ?templateMotifSequenceMatchRegionP76562139 faldo:begin ?templateMotifSequenceMatchBeginP76562140 . ?templateMotifSequenceMatchBeginP76562140 faldo:position ?templateMotifSequenceMatchBeginPositionP76562135 ; faldo:reference isoform:P76562-1 . ?templateMotifSequenceProfileAlignmentOperationP76562141 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . ?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886145 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76562MF_01886136 . ?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886144 . ?targetMotifMatchRegionMatchBeginMF_01886144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886137 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01886145 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886134, 1, (STRLEN(?templateMotifCigarP76562MF_01886134) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886134, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP76562135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886136, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886136) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886136, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886136) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) . BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01886137) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t148) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_01886a38')) AS ?annotation38) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP76562154 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562156 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76562MF_01886149 . ?templateMotifSequenceMatchRegionP76562154 faldo:begin ?templateMotifSequenceMatchBeginP76562155 . ?templateMotifSequenceMatchBeginP76562155 faldo:position ?templateMotifSequenceMatchBeginPositionP76562150 ; faldo:reference isoform:P76562-1 . ?templateMotifSequenceProfileAlignmentOperationP76562156 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . ?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886160 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76562MF_01886151 . ?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886159 . ?targetMotifMatchRegionMatchBeginMF_01886159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886152 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01886160 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886149, 1, (STRLEN(?templateMotifCigarP76562MF_01886149) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886149, CONCAT('^(?:-*[^-]){', STR(((319 - ?templateMotifSequenceMatchBeginPositionP76562150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886151, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886151) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886151, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886151) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) . BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_01886152) - 1) AS ?thisPositionOn49) . BIND(?thisPositionOn49 AS ?thisPositionOn50) . BIND(?this AS ?pfs1t163) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01886a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionP76562169 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562171 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76562MF_01886164 . ?templateMotifSequenceMatchRegionP76562169 faldo:begin ?templateMotifSequenceMatchBeginP76562170 . ?templateMotifSequenceMatchBeginP76562170 faldo:position ?templateMotifSequenceMatchBeginPositionP76562165 ; faldo:reference isoform:P76562-1 . ?templateMotifSequenceProfileAlignmentOperationP76562171 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . ?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886175 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76562MF_01886166 . ?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886174 . ?targetMotifMatchRegionMatchBeginMF_01886174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886167 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01886175 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886164, 1, (STRLEN(?templateMotifCigarP76562MF_01886164) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886164, CONCAT('^(?:-*[^-]){', STR(((499 - ?templateMotifSequenceMatchBeginPositionP76562165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886166, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886166) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886166, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886166) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) . BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_01886167) - 1) AS ?thisPositionOn56) . BIND(?thisPositionOn56 AS ?thisPositionOn57) . BIND(?this AS ?pfs1t178) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01886a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch183 faldo:location ?templateMotifSequenceMatchRegionP76562184 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562186 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76562MF_01886179 . ?templateMotifSequenceMatchRegionP76562184 faldo:begin ?templateMotifSequenceMatchBeginP76562185 . ?templateMotifSequenceMatchBeginP76562185 faldo:position ?templateMotifSequenceMatchBeginPositionP76562180 ; faldo:reference isoform:P76562-1 . ?templateMotifSequenceProfileAlignmentOperationP76562186 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . ?targetMotifMatch187 faldo:location ?targetMotifMatchRegionMatch188 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886190 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76562MF_01886181 . ?targetMotifMatchRegionMatch188 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886189 . ?targetMotifMatchRegionMatchBeginMF_01886189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886182 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01886190 edam:has_input signature:MF_01886 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886179, 1, (STRLEN(?templateMotifCigarP76562MF_01886179) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886179, CONCAT('^(?:-*[^-]){', STR(((506 - ?templateMotifSequenceMatchBeginPositionP76562180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1191) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886181, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886181) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886181, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886181) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), '')))), '[^-]', ''))) AS ?step2192) . BIND(((?step2192 + ?targetMotifMatchRegionMatchBeginPositionMF_01886182) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs1t193) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01886a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2258 . BIND(?this AS ?case8) . } }