CONSTRUCT { _:663875 up:source unirule:MF_01923 . _:663876 up:source unirule:MF_01923 . _:663877 up:source unirule:MF_01923 . _:663878 up:source unirule:MF_01923 . _:663879 up:source unirule:MF_01923 . _:663880 up:source unirule:MF_01923 . _:663881 up:source unirule:MF_01923 . _:663882 up:source unirule:MF_01923 . _:663883 up:source unirule:MF_01923 . _:663884 up:source unirule:MF_01923 . _:663885 up:source unirule:MF_01923 . _:663886 up:source unirule:MF_01923 . _:663887 up:source unirule:MF_01923 . _:663888 up:source unirule:MF_01923 . _:663889 up:source unirule:MF_01923 . _:663890 up:source unirule:MF_01923 . _:663891 up:source unirule:MF_01923 . _:663892 up:source unirule:MF_01923 . _:663893 up:source unirule:MF_01923 . _:663894 up:source unirule:MF_01923 . _:663895 up:source unirule:MF_01923 . _:663896 up:source unirule:MF_01923 . _:663897 up:source unirule:MF_01923 . _:663898 up:source unirule:MF_01923 . _:663899 up:source unirule:MF_01923 . _:663900 up:source unirule:MF_01923 . _:663901 up:source unirule:MF_01923 . _:663902 up:source unirule:MF_01923 . _:663903 up:source unirule:MF_01923 . ?this up:alternativeName ?name1 , ?name2 , ?name3 ; up:annotation ?annotation5 , ?annotation6 , ?annotation8 , ?annotation9 , ?annotation10 , ?annotation11 ; up:classifiedWith GO:0019670 , GO:0050097 , keyword:170 , keyword:413 , keyword:846 ; up:recommendedName ?name0 . ?name0 up:ecName '5.4.99.1' ; up:fullName 'Glutamate mutase epsilon subunit' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Glutamate mutase E chain' ; rdf:type up:Structured_Name . ?name2 up:fullName 'Glutamate mutase large subunit' ; rdf:type up:Structured_Name . ?name3 up:fullName 'Methylaspartate mutase' ; rdf:type up:Structured_Name . ?gene4 skos:prefLabel 'glmE' . ?annotation5 a up:Function_Annotation ; rdfs:comment 'Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).' . ?annotation6 up:activity ?activity7 ; rdf:type up:Catalytic_Activity_Annotation . ?activity7 up:catalyticActivity <http://rdf.rhea-db.org/12857>; up:enzymeClass <http://purl.uniprot.org/enzyme/5.4.99.1>. ?annotation8 up:cofactor chebi:18408 ; rdf:type up:Cofactor_Annotation . ?annotation9 a up:Pathway_Annotation ; rdfs:comment 'Amino-acid degradation; L-glutamate degradation via mesaconate pathway; acetate and pyruvate from L-glutamate: step 1/4.' . ?annotation10 a up:Subunit_Annotation ; rdfs:comment 'Heterotetramer composed of 2 epsilon subunits (GlmE) and 2 sigma subunits (GlmS). GlmE exists as a homodimer and GlmS as a monomer.' . ?annotation11 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the methylaspartate mutase GlmE subunit family.' . ?pfs12 up:annotation ?annotation13 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; up:ligand ?ligand16 ; rdf:type up:Binding_Site_Annotation . ?pfsb14 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?ligand16 rdfs:subClassOf chebi:29985 . ?pfs19 up:annotation ?annotation20 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; up:ligand ?ligand23 ; rdf:type up:Binding_Site_Annotation . ?pfsb21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?ligand23 rdfs:subClassOf chebi:29985 . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; up:ligand ?ligand30 ; rdf:type up:Binding_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand30 rdfs:subClassOf chebi:18408 . ?pfs33 up:annotation ?annotation34 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; up:ligand ?ligand37 ; rdf:type up:Binding_Site_Annotation . ?pfsb35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?ligand37 rdfs:subClassOf chebi:29985 . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation . ?pfsb42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf chebi:18408 . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation . ?pfsb49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf chebi:29985 . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf chebi:29985 . ?pfs61 up:annotation ?annotation62 . ?annotation62 faldo:begin ?pfsb63 ; faldo:end ?pfse64 ; up:ligand ?ligand65 ; rdf:type up:Binding_Site_Annotation . ?pfsb63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?ligand65 rdfs:subClassOf chebi:18408 . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; up:ligand ?ligand72 ; rdf:type up:Binding_Site_Annotation . ?pfsb70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?ligand72 rdfs:subClassOf chebi:29985 . ?pfs75 up:annotation ?annotation76 . ?annotation76 faldo:begin ?pfsb77 ; faldo:end ?pfse78 ; up:ligand ?ligand79 ; rdf:type up:Binding_Site_Annotation . ?pfsb77 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?pfse78 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . ?ligand79 rdfs:subClassOf chebi:18408 . ?pfs82 up:annotation ?annotation83 . ?annotation83 faldo:begin ?pfsb84 ; faldo:end ?pfse85 ; up:ligand ?ligand86 ; rdf:type up:Binding_Site_Annotation . ?pfsb84 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?pfse85 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . ?ligand86 rdfs:subClassOf chebi:18408 . ?pfs89 up:annotation ?annotation90 . ?annotation90 faldo:begin ?pfsb91 ; faldo:end ?pfse92 ; up:ligand ?ligand93 ; rdf:type up:Binding_Site_Annotation . ?pfsb91 faldo:position ?thisPositionOn94 ; rdf:type faldo:ExactPosition . ?pfse92 faldo:position ?thisPositionOn95 ; rdf:type faldo:ExactPosition . ?ligand93 rdfs:subClassOf chebi:18408 . ?pfs96 up:annotation ?annotation97 . ?annotation97 faldo:begin ?pfsb98 ; faldo:end ?pfse99 ; up:ligand ?ligand100 ; rdf:type up:Binding_Site_Annotation . ?pfsb98 faldo:position ?thisPositionOn101 ; rdf:type faldo:ExactPosition . ?pfse99 faldo:position ?thisPositionOn102 ; rdf:type faldo:ExactPosition . ?ligand100 rdfs:subClassOf chebi:18408 . _:663904 a rdf:Statement ; up:attribution _:663875 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:663905 a rdf:Statement ; up:attribution _:663876 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:663906 a rdf:Statement ; up:attribution _:663877 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:663907 a rdf:Statement ; up:attribution _:663878 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name3 . _:663908 a rdf:Statement ; up:attribution _:663879 ; rdf:subject ?gene4 ; rdf:predicate up:encodedBy ; rdf:object ?gene4 . _:663909 a rdf:Statement ; up:attribution _:663880 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:663910 a rdf:Statement ; up:attribution _:663881 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:663911 a rdf:Statement ; up:attribution _:663882 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:663912 a rdf:Statement ; up:attribution _:663883 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:663913 a rdf:Statement ; up:attribution _:663884 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:663914 a rdf:Statement ; up:attribution _:663885 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:663915 a rdf:Statement ; up:attribution _:663886 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:846 . _:663916 a rdf:Statement ; up:attribution _:663887 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:170 . _:663917 a rdf:Statement ; up:attribution _:663888 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:413 . _:663918 a rdf:Statement ; up:attribution _:663889 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0050097 . _:663919 a rdf:Statement ; up:attribution _:663890 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019670 . _:663920 a rdf:Statement ; up:source unirule:MF_01923 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:663921 a rdf:Statement ; up:attribution _:663891 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:663922 a rdf:Statement ; up:source unirule:MF_01923 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:663923 a rdf:Statement ; up:attribution _:663892 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:663924 a rdf:Statement ; up:source unirule:MF_01923 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:663925 a rdf:Statement ; up:attribution _:663893 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:663926 a rdf:Statement ; up:source unirule:MF_01923 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:663927 a rdf:Statement ; up:attribution _:663894 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:663928 a rdf:Statement ; up:source unirule:MF_01923 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:663929 a rdf:Statement ; up:attribution _:663895 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:663930 a rdf:Statement ; up:source unirule:MF_01923 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:663931 a rdf:Statement ; up:attribution _:663896 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:663932 a rdf:Statement ; up:source unirule:MF_01923 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:663933 a rdf:Statement ; up:attribution _:663897 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:663934 a rdf:Statement ; up:source unirule:MF_01923 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:663935 a rdf:Statement ; up:attribution _:663898 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:663936 a rdf:Statement ; up:source unirule:MF_01923 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:663937 a rdf:Statement ; up:attribution _:663899 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:663938 a rdf:Statement ; up:source unirule:MF_01923 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:663939 a rdf:Statement ; up:attribution _:663900 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:663940 a rdf:Statement ; up:source unirule:MF_01923 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:663941 a rdf:Statement ; up:attribution _:663901 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:663942 a rdf:Statement ; up:source unirule:MF_01923 ; rdf:subject ?pfs89 ; rdf:predicate up:annotation ; rdf:object ?annotation90 . _:663943 a rdf:Statement ; up:attribution _:663902 ; rdf:subject ?pfs89 ; rdf:predicate up:annotation ; rdf:object ?annotation90 . _:663944 a rdf:Statement ; up:source unirule:MF_01923 ; rdf:subject ?pfs96 ; rdf:predicate up:annotation ; rdf:object ?annotation97 . _:663945 a rdf:Statement ; up:attribution _:663903 ; rdf:subject ?pfs96 ; rdf:predicate up:annotation ; rdf:object ?annotation97 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01923 #Rule MF_01923 Created by:crivoire on:2014-05-23 Modified by:ecastro on:2023-06-01 VALUES ?supertaxon103 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01923 . ?thisOrganism rdfs:subClassOf+ ?supertaxon103 . BIND(URI(CONCAT(STR(?this), '#MF_01923a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01923a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01923a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_01923a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_01923a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01923a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01923a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_01923a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_01923a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_01923a11')) AS ?annotation11) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionP80077109 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077111 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP80077MF_01923104 . ?templateMotifSequenceMatchRegionP80077109 faldo:begin ?templateMotifSequenceMatchBeginP80077110 . ?templateMotifSequenceMatchBeginP80077110 faldo:position ?templateMotifSequenceMatchBeginPositionP80077105 ; faldo:reference isoform:P80077-1 . ?templateMotifSequenceProfileAlignmentOperationP80077111 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . ?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923115 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP80077MF_01923106 . ?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923114 . ?targetMotifMatchRegionMatchBeginMF_01923114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923107 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01923115 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923104, 1, (STRLEN(?templateMotifCigarP80077MF_01923104) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923104, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionP80077105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923106, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923106) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923106, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923106) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) . BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_01923107) - 1) AS ?thisPositionOn17) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923104, 1, (STRLEN(?templateMotifCigarP80077MF_01923104) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923104, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP80077105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923106, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923106) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923106, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923106) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) . BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_01923107) - 1) AS ?thisPositionOn18) . BIND(?this AS ?pfs1t120) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) . FILTER (REGEX('[RK]H', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) . BIND(URI(CONCAT(STR(?this), '#MF_01923a13')) AS ?annotation13) . BIND(?this AS ?pfs12) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch125 faldo:location ?templateMotifSequenceMatchRegionP80077126 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077128 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP80077MF_01923121 . ?templateMotifSequenceMatchRegionP80077126 faldo:begin ?templateMotifSequenceMatchBeginP80077127 . ?templateMotifSequenceMatchBeginP80077127 faldo:position ?templateMotifSequenceMatchBeginPositionP80077122 ; faldo:reference isoform:P80077-1 . ?templateMotifSequenceProfileAlignmentOperationP80077128 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . ?targetMotifMatch129 faldo:location ?targetMotifMatchRegionMatch130 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923132 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP80077MF_01923123 . ?targetMotifMatchRegionMatch130 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923131 . ?targetMotifMatchRegionMatchBeginMF_01923131 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923124 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01923132 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923121, 1, (STRLEN(?templateMotifCigarP80077MF_01923121) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923121, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP80077122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923123, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923123) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923123, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923123) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) . BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_01923124) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs1t135) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01923a20')) AS ?annotation20) . BIND(?this AS ?pfs19) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch140 faldo:location ?templateMotifSequenceMatchRegionP80077141 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077143 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP80077MF_01923136 . ?templateMotifSequenceMatchRegionP80077141 faldo:begin ?templateMotifSequenceMatchBeginP80077142 . ?templateMotifSequenceMatchBeginP80077142 faldo:position ?templateMotifSequenceMatchBeginPositionP80077137 ; faldo:reference isoform:P80077-1 . ?templateMotifSequenceProfileAlignmentOperationP80077143 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . ?targetMotifMatch144 faldo:location ?targetMotifMatchRegionMatch145 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923147 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP80077MF_01923138 . ?targetMotifMatchRegionMatch145 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923146 . ?targetMotifMatchRegionMatchBeginMF_01923146 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923139 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01923147 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923136, 1, (STRLEN(?templateMotifCigarP80077MF_01923136) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923136, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP80077137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923138, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923138) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923138, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923138) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) . BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_01923139) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs1t150) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_01923a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch155 faldo:location ?templateMotifSequenceMatchRegionP80077156 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077158 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP80077MF_01923151 . ?templateMotifSequenceMatchRegionP80077156 faldo:begin ?templateMotifSequenceMatchBeginP80077157 . ?templateMotifSequenceMatchBeginP80077157 faldo:position ?templateMotifSequenceMatchBeginPositionP80077152 ; faldo:reference isoform:P80077-1 . ?templateMotifSequenceProfileAlignmentOperationP80077158 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . ?targetMotifMatch159 faldo:location ?targetMotifMatchRegionMatch160 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923162 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP80077MF_01923153 . ?targetMotifMatchRegionMatch160 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923161 . ?targetMotifMatchRegionMatchBeginMF_01923161 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923154 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01923162 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923151, 1, (STRLEN(?templateMotifCigarP80077MF_01923151) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923151, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionP80077152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923153, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923153) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923153, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923153) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) . BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_01923154) - 1) AS ?thisPositionOn38) . BIND(?thisPositionOn38 AS ?thisPositionOn39) . BIND(?this AS ?pfs1t165) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01923a34')) AS ?annotation34) . BIND(?this AS ?pfs33) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch170 faldo:location ?templateMotifSequenceMatchRegionP80077171 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077173 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP80077MF_01923166 . ?templateMotifSequenceMatchRegionP80077171 faldo:begin ?templateMotifSequenceMatchBeginP80077172 . ?templateMotifSequenceMatchBeginP80077172 faldo:position ?templateMotifSequenceMatchBeginPositionP80077167 ; faldo:reference isoform:P80077-1 . ?templateMotifSequenceProfileAlignmentOperationP80077173 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . ?targetMotifMatch174 faldo:location ?targetMotifMatchRegionMatch175 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923177 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP80077MF_01923168 . ?targetMotifMatchRegionMatch175 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923176 . ?targetMotifMatchRegionMatchBeginMF_01923176 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923169 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01923177 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923166, 1, (STRLEN(?templateMotifCigarP80077MF_01923166) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923166, CONCAT('^(?:-*[^-]){', STR(((123 - ?templateMotifSequenceMatchBeginPositionP80077167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923168, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923168) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923168, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923168) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) . BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_01923169) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs1t180) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_01923a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch185 faldo:location ?templateMotifSequenceMatchRegionP80077186 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077188 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP80077MF_01923181 . ?templateMotifSequenceMatchRegionP80077186 faldo:begin ?templateMotifSequenceMatchBeginP80077187 . ?templateMotifSequenceMatchBeginP80077187 faldo:position ?templateMotifSequenceMatchBeginPositionP80077182 ; faldo:reference isoform:P80077-1 . ?templateMotifSequenceProfileAlignmentOperationP80077188 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . ?targetMotifMatch189 faldo:location ?targetMotifMatchRegionMatch190 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923192 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP80077MF_01923183 . ?targetMotifMatchRegionMatch190 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923191 . ?targetMotifMatchRegionMatchBeginMF_01923191 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923184 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01923192 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923181, 1, (STRLEN(?templateMotifCigarP80077MF_01923181) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923181, CONCAT('^(?:-*[^-]){', STR(((171 - ?templateMotifSequenceMatchBeginPositionP80077182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923183, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923183) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923183, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923183) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) . BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_01923184) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs1t195) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) . FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01923a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch200 faldo:location ?templateMotifSequenceMatchRegionP80077201 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077203 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP80077MF_01923196 . ?templateMotifSequenceMatchRegionP80077201 faldo:begin ?templateMotifSequenceMatchBeginP80077202 . ?templateMotifSequenceMatchBeginP80077202 faldo:position ?templateMotifSequenceMatchBeginPositionP80077197 ; faldo:reference isoform:P80077-1 . ?templateMotifSequenceProfileAlignmentOperationP80077203 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . ?targetMotifMatch204 faldo:location ?targetMotifMatchRegionMatch205 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923207 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP80077MF_01923198 . ?targetMotifMatchRegionMatch205 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923206 . ?targetMotifMatchRegionMatchBeginMF_01923206 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923199 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01923207 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923196, 1, (STRLEN(?templateMotifCigarP80077MF_01923196) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923196, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionP80077197) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1208) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923198, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923198) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923198, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923198) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), '')))), '[^-]', ''))) AS ?step2209) . BIND(((?step2209 + ?targetMotifMatchRegionMatchBeginPositionMF_01923199) - 1) AS ?thisPositionOn59) . BIND(?thisPositionOn59 AS ?thisPositionOn60) . BIND(?this AS ?pfs1t210) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01923a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch215 faldo:location ?templateMotifSequenceMatchRegionP80077216 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077218 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP80077MF_01923211 . ?templateMotifSequenceMatchRegionP80077216 faldo:begin ?templateMotifSequenceMatchBeginP80077217 . ?templateMotifSequenceMatchBeginP80077217 faldo:position ?templateMotifSequenceMatchBeginPositionP80077212 ; faldo:reference isoform:P80077-1 . ?templateMotifSequenceProfileAlignmentOperationP80077218 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . ?targetMotifMatch219 faldo:location ?targetMotifMatchRegionMatch220 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923222 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP80077MF_01923213 . ?targetMotifMatchRegionMatch220 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923221 . ?targetMotifMatchRegionMatchBeginMF_01923221 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923214 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01923222 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923211, 1, (STRLEN(?templateMotifCigarP80077MF_01923211) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923211, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP80077212) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1223) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923213, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923213) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923213, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923213, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923213) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923213, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), '')))), '[^-]', ''))) AS ?step2224) . BIND(((?step2224 + ?targetMotifMatchRegionMatchBeginPositionMF_01923214) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs1t225) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'P')) . BIND(URI(CONCAT(STR(?this), '#MF_01923a62')) AS ?annotation62) . BIND(?this AS ?pfs61) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch230 faldo:location ?templateMotifSequenceMatchRegionP80077231 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077233 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP80077MF_01923226 . ?templateMotifSequenceMatchRegionP80077231 faldo:begin ?templateMotifSequenceMatchBeginP80077232 . ?templateMotifSequenceMatchBeginP80077232 faldo:position ?templateMotifSequenceMatchBeginPositionP80077227 ; faldo:reference isoform:P80077-1 . ?templateMotifSequenceProfileAlignmentOperationP80077233 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . ?targetMotifMatch234 faldo:location ?targetMotifMatchRegionMatch235 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923237 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP80077MF_01923228 . ?targetMotifMatchRegionMatch235 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923236 . ?targetMotifMatchRegionMatchBeginMF_01923236 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923229 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01923237 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923226, 1, (STRLEN(?templateMotifCigarP80077MF_01923226) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923226, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionP80077227) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1238) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923228, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923228) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1238), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923228, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923228) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1238), '}'), '')))), '[^-]', ''))) AS ?step2239) . BIND(((?step2239 + ?targetMotifMatchRegionMatchBeginPositionMF_01923229) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs1t240) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01923a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch245 faldo:location ?templateMotifSequenceMatchRegionP80077246 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077248 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP80077MF_01923241 . ?templateMotifSequenceMatchRegionP80077246 faldo:begin ?templateMotifSequenceMatchBeginP80077247 . ?templateMotifSequenceMatchBeginP80077247 faldo:position ?templateMotifSequenceMatchBeginPositionP80077242 ; faldo:reference isoform:P80077-1 . ?templateMotifSequenceProfileAlignmentOperationP80077248 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . ?targetMotifMatch249 faldo:location ?targetMotifMatchRegionMatch250 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923252 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP80077MF_01923243 . ?targetMotifMatchRegionMatch250 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923251 . ?targetMotifMatchRegionMatchBeginMF_01923251 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923244 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01923252 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923241, 1, (STRLEN(?templateMotifCigarP80077MF_01923241) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923241, CONCAT('^(?:-*[^-]){', STR(((297 - ?templateMotifSequenceMatchBeginPositionP80077242) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1253) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923243, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923243) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923243, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923243) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), '')))), '[^-]', ''))) AS ?step2254) . BIND(((?step2254 + ?targetMotifMatchRegionMatchBeginPositionMF_01923244) - 1) AS ?thisPositionOn80) . BIND(?thisPositionOn80 AS ?thisPositionOn81) . BIND(?this AS ?pfs1t255) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'F')) . BIND(URI(CONCAT(STR(?this), '#MF_01923a76')) AS ?annotation76) . BIND(?this AS ?pfs75) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch260 faldo:location ?templateMotifSequenceMatchRegionP80077261 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077263 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP80077MF_01923256 . ?templateMotifSequenceMatchRegionP80077261 faldo:begin ?templateMotifSequenceMatchBeginP80077262 . ?templateMotifSequenceMatchBeginP80077262 faldo:position ?templateMotifSequenceMatchBeginPositionP80077257 ; faldo:reference isoform:P80077-1 . ?templateMotifSequenceProfileAlignmentOperationP80077263 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . ?targetMotifMatch264 faldo:location ?targetMotifMatchRegionMatch265 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923267 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP80077MF_01923258 . ?targetMotifMatchRegionMatch265 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923266 . ?targetMotifMatchRegionMatchBeginMF_01923266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923259 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01923267 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923256, 1, (STRLEN(?templateMotifCigarP80077MF_01923256) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923256, CONCAT('^(?:-*[^-]){', STR(((326 - ?templateMotifSequenceMatchBeginPositionP80077257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1268) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923258, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923258) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923258, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923258) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), '')))), '[^-]', ''))) AS ?step2269) . BIND(((?step2269 + ?targetMotifMatchRegionMatchBeginPositionMF_01923259) - 1) AS ?thisPositionOn87) . BIND(?thisPositionOn87 AS ?thisPositionOn88) . BIND(?this AS ?pfs1t270) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01923a83')) AS ?annotation83) . BIND(?this AS ?pfs82) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch275 faldo:location ?templateMotifSequenceMatchRegionP80077276 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077278 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP80077MF_01923271 . ?templateMotifSequenceMatchRegionP80077276 faldo:begin ?templateMotifSequenceMatchBeginP80077277 . ?templateMotifSequenceMatchBeginP80077277 faldo:position ?templateMotifSequenceMatchBeginPositionP80077272 ; faldo:reference isoform:P80077-1 . ?templateMotifSequenceProfileAlignmentOperationP80077278 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . ?targetMotifMatch279 faldo:location ?targetMotifMatchRegionMatch280 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923282 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP80077MF_01923273 . ?targetMotifMatchRegionMatch280 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923281 . ?targetMotifMatchRegionMatchBeginMF_01923281 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923274 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01923282 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923271, 1, (STRLEN(?templateMotifCigarP80077MF_01923271) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923271, CONCAT('^(?:-*[^-]){', STR(((330 - ?templateMotifSequenceMatchBeginPositionP80077272) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1283) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923273, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923273) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923273, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923273) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), '')))), '[^-]', ''))) AS ?step2284) . BIND(((?step2284 + ?targetMotifMatchRegionMatchBeginPositionMF_01923274) - 1) AS ?thisPositionOn94) . BIND(?thisPositionOn94 AS ?thisPositionOn95) . BIND(?this AS ?pfs1t285) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb91) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse92) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01923a90')) AS ?annotation90) . BIND(?this AS ?pfs89) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch290 faldo:location ?templateMotifSequenceMatchRegionP80077291 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP80077293 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP80077MF_01923286 . ?templateMotifSequenceMatchRegionP80077291 faldo:begin ?templateMotifSequenceMatchBeginP80077292 . ?templateMotifSequenceMatchBeginP80077292 faldo:position ?templateMotifSequenceMatchBeginPositionP80077287 ; faldo:reference isoform:P80077-1 . ?templateMotifSequenceProfileAlignmentOperationP80077293 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . ?targetMotifMatch294 faldo:location ?targetMotifMatchRegionMatch295 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01923297 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP80077MF_01923288 . ?targetMotifMatchRegionMatch295 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01923296 . ?targetMotifMatchRegionMatchBeginMF_01923296 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01923289 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01923297 edam:has_input signature:MF_01923 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP80077MF_01923286, 1, (STRLEN(?templateMotifCigarP80077MF_01923286) - STRLEN(REPLACE(?templateMotifCigarP80077MF_01923286, CONCAT('^(?:-*[^-]){', STR(((334 - ?templateMotifSequenceMatchBeginPositionP80077287) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1298) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP80077MF_01923288, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923288) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1298), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP80077MF_01923288, 1, (STRLEN(?targetMotifMatchCigarP80077MF_01923288) - STRLEN(REPLACE(?targetMotifMatchCigarP80077MF_01923288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1298), '}'), '')))), '[^-]', ''))) AS ?step2299) . BIND(((?step2299 + ?targetMotifMatchRegionMatchBeginPositionMF_01923289) - 1) AS ?thisPositionOn101) . BIND(?thisPositionOn101 AS ?thisPositionOn102) . BIND(?this AS ?pfs1t300) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb98) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse99) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn101, 1) = 'I')) . BIND(URI(CONCAT(STR(?this), '#MF_01923a97')) AS ?annotation97) . BIND(?this AS ?pfs96) . } }