CONSTRUCT { _:676602 up:source unirule:MF_01934 . _:676603 up:source unirule:MF_01934 . _:676604 up:source unirule:MF_01934 . _:676605 up:source unirule:MF_01934 . _:676606 up:source unirule:MF_01934 . _:676607 up:source unirule:MF_01934 . _:676608 up:source unirule:MF_01934 . _:676609 up:source unirule:MF_01934 . _:676610 up:source unirule:MF_01934 . _:676611 up:source unirule:MF_01934 . _:676612 up:source unirule:MF_01934 . _:676613 up:source unirule:MF_01934 . _:676614 up:source unirule:MF_01934 . _:676615 up:source unirule:MF_01934 . _:676616 up:source unirule:MF_01934 . _:676617 up:source unirule:MF_01934 . _:676618 up:source unirule:MF_01934 . _:676619 up:source unirule:MF_01934 . _:676620 up:source unirule:MF_01934 . _:676621 up:source unirule:MF_01934 . _:676622 up:source unirule:MF_01934 . _:676623 up:source unirule:MF_01934 . _:676624 up:source unirule:MF_01934 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation6 ; up:classifiedWith GO:0008935 , keyword:456 ; up:recommendedName ?name0 . ?name0 up:ecName '4.1.3.36' ; up:fullName '1,4-dihydroxy-2-naphthoyl-CoA synthase' ; up:shortName 'DHNA-CoA synthase' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'menB' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/26562>; up:enzymeClass <http://purl.uniprot.org/enzyme/4.1.3.36>. ?annotation5 a up:Pathway_Annotation ; rdfs:comment 'Quinol/quinone metabolism; 1,4-dihydroxy-2-naphthoate biosynthesis; 1,4-dihydroxy-2-naphthoate from chorismate: step 6/7.' . ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.' . ?case8 up:classifiedWith GO:0042372 . ?case9 up:classifiedWith GO:0009234 , keyword:474 . ?pfs10 up:annotation ?annotation11 . ?annotation11 faldo:begin ?pfsb12 ; faldo:end ?pfse13 ; up:ligand ?ligand14 ; rdf:type up:Binding_Site_Annotation . ?pfsb12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?ligand14 rdfs:subClassOf chebi:17544 . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for catalysis' . ?pfsb19 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb25 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf ?molecule28 . ?molecule28 rdfs:label 'substrate' . ?pfs31 up:annotation ?annotation32 . ?annotation32 faldo:begin ?pfsb33 ; faldo:end ?pfse34 ; up:ligand ?ligand35 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb33 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse34 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand35 rdfs:subClassOf ?molecule36 . ?molecule36 rdfs:label 'substrate' . ?pfs39 up:annotation ?annotation40 . ?annotation40 faldo:begin ?pfsb41 ; faldo:end ?pfse42 ; up:ligand ?ligand43 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb41 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse42 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand43 rdfs:subClassOf ?molecule44 . ?molecule44 rdfs:label 'substrate' . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb49 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf ?molecule52 . ?molecule52 rdfs:label 'substrate' . ?pfs55 up:annotation ?annotation56 . ?annotation56 faldo:begin ?pfsb57 ; faldo:end ?pfse58 ; up:ligand ?ligand59 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb57 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?pfse58 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?ligand59 rdfs:subClassOf ?molecule60 . ?molecule60 rdfs:label 'substrate' . ?pfs63 up:annotation ?annotation64 . ?annotation64 faldo:begin ?pfsb65 ; faldo:end ?pfse66 ; up:ligand ?ligand67 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb65 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?pfse66 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?ligand67 rdfs:subClassOf ?molecule68 . ?molecule68 rdfs:label 'substrate' . ?pfs71 up:annotation ?annotation72 . ?annotation72 faldo:begin ?pfsb73 ; faldo:end ?pfse74 ; up:ligand ?ligand75 ; rdf:type up:Binding_Site_Annotation . ?pfsb73 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?pfse74 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?ligand75 rdfs:subClassOf ?molecule76 . ?molecule76 rdfs:label 'substrate' . ?pfs79 up:annotation ?annotation80 . ?annotation80 faldo:begin ?pfsb81 ; faldo:end ?pfse82 ; up:ligand ?ligand83 ; rdf:type up:Binding_Site_Annotation . ?pfsb81 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?pfse82 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . ?ligand83 rdfs:subClassOf ?molecule84 . ?molecule84 rdfs:label 'substrate' . ?pfs87 up:annotation ?annotation88 . ?annotation88 faldo:begin ?pfsb89 ; faldo:end ?pfse90 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for catalysis' . ?pfsb89 faldo:position ?thisPositionOn91 ; rdf:type faldo:ExactPosition . ?pfse90 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?pfs93 up:annotation ?annotation94 . ?annotation94 faldo:begin ?pfsb95 ; faldo:end ?pfse96 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for catalysis' . ?pfsb95 faldo:position ?thisPositionOn97 ; rdf:type faldo:ExactPosition . ?pfse96 faldo:position ?thisPositionOn98 ; rdf:type faldo:ExactPosition . _:676625 a rdf:Statement ; up:attribution _:676602 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:676626 a rdf:Statement ; up:attribution _:676603 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:676627 a rdf:Statement ; up:attribution _:676604 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:676628 a rdf:Statement ; up:attribution _:676605 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:676629 a rdf:Statement ; up:attribution _:676606 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:676630 a rdf:Statement ; up:attribution _:676607 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:676631 a rdf:Statement ; up:attribution _:676608 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:456 . _:676632 a rdf:Statement ; up:attribution _:676609 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008935 . _:676633 a rdf:Statement ; up:attribution _:676610 ; rdf:subject ?case8 ; rdf:predicate up:classifiedWith ; rdf:object GO:0042372 . _:676634 a rdf:Statement ; up:attribution _:676611 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object keyword:474 . _:676635 a rdf:Statement ; up:attribution _:676612 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009234 . _:676636 a rdf:Statement ; up:source unirule:MF_01934 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:676637 a rdf:Statement ; up:attribution _:676613 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:676638 a rdf:Statement ; up:source unirule:MF_01934 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:676639 a rdf:Statement ; up:attribution _:676614 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:676640 a rdf:Statement ; up:source unirule:MF_01934 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:676641 a rdf:Statement ; up:attribution _:676615 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:676642 a rdf:Statement ; up:source unirule:MF_01934 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:676643 a rdf:Statement ; up:attribution _:676616 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:676644 a rdf:Statement ; up:source unirule:MF_01934 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:676645 a rdf:Statement ; up:attribution _:676617 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:676646 a rdf:Statement ; up:source unirule:MF_01934 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:676647 a rdf:Statement ; up:attribution _:676618 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:676648 a rdf:Statement ; up:source unirule:MF_01934 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:676649 a rdf:Statement ; up:attribution _:676619 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:676650 a rdf:Statement ; up:source unirule:MF_01934 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:676651 a rdf:Statement ; up:attribution _:676620 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:676652 a rdf:Statement ; up:source unirule:MF_01934 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:676653 a rdf:Statement ; up:attribution _:676621 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:676654 a rdf:Statement ; up:source unirule:MF_01934 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:676655 a rdf:Statement ; up:attribution _:676622 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:676656 a rdf:Statement ; up:source unirule:MF_01934 ; rdf:subject ?pfs87 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:676657 a rdf:Statement ; up:attribution _:676623 ; rdf:subject ?pfs87 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:676658 a rdf:Statement ; up:source unirule:MF_01934 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:676659 a rdf:Statement ; up:attribution _:676624 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01934 #Rule MF_01934 Created by:? on:2014-10-08 Modified by:Edouard de Castro on:2023-06-01 VALUES ?supertaxon99 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01934 . ?thisOrganism rdfs:subClassOf+ ?supertaxon99 . BIND(URI(CONCAT(STR(?this), '#MF_01934a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01934a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01934a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01934a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01934a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionP0ABU0105 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0107 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ABU0MF_01934100 . ?templateMotifSequenceMatchRegionP0ABU0105 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0106 . ?templateMotifSequenceMatchBeginP0ABU0106 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0101 ; faldo:reference isoform:P0ABU0-1 . ?templateMotifSequenceProfileAlignmentOperationP0ABU0107 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . ?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934111 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ABU0MF_01934102 . ?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934110 . ?targetMotifMatchRegionMatchBeginMF_01934110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934103 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01934111 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . BIND(?this AS ?taghydrogencarbonate) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934100, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934100) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934100, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionP0ABU0101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934102, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934102) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934102, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934102) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) . BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01934103) - 1) AS ?thisPositionOn15) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934100, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934100) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934100, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP0ABU0101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934102, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934102) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934102, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934102) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) . BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01934103) - 1) AS ?thisPositionOn16) . BIND(?this AS ?pfs1t116) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)) = 'QTG')) . BIND(URI(CONCAT(STR(?this), '#MF_01934a11')) AS ?annotation11) . BIND(?this AS ?pfs10) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP9WNP5122 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WNP5124 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WNP5MF_01934117 . ?templateMotifSequenceMatchRegionP9WNP5122 faldo:begin ?templateMotifSequenceMatchBeginP9WNP5123 . ?templateMotifSequenceMatchBeginP9WNP5123 faldo:position ?templateMotifSequenceMatchBeginPositionP9WNP5118 ; faldo:reference isoform:P9WNP5-1 . ?templateMotifSequenceProfileAlignmentOperationP9WNP5124 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . ?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934128 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WNP5MF_01934119 . ?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934127 . ?targetMotifMatchRegionMatchBeginMF_01934127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934120 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01934128 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WNP5MF_01934117, 1, (STRLEN(?templateMotifCigarP9WNP5MF_01934117) - STRLEN(REPLACE(?templateMotifCigarP9WNP5MF_01934117, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionP9WNP5118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WNP5MF_01934119, 1, (STRLEN(?targetMotifMatchCigarP9WNP5MF_01934119) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNP5MF_01934119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WNP5MF_01934119, 1, (STRLEN(?targetMotifMatchCigarP9WNP5MF_01934119) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNP5MF_01934119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) . BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01934120) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs2t131) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01934a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionP0ABU0137 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0139 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ABU0MF_01934132 . ?templateMotifSequenceMatchRegionP0ABU0137 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0138 . ?templateMotifSequenceMatchBeginP0ABU0138 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0133 ; faldo:reference isoform:P0ABU0-1 . ?templateMotifSequenceProfileAlignmentOperationP0ABU0139 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . ?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934143 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ABU0MF_01934134 . ?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934142 . ?targetMotifMatchRegionMatchBeginMF_01934142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934135 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01934143 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934132, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934132) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934132, CONCAT('^(?:-*[^-]){', STR(((129 - ?templateMotifSequenceMatchBeginPositionP0ABU0133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934134, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934134) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934134, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934134) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) . BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_01934135) - 1) AS ?thisPositionOn29) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934132, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934132) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934132, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP0ABU0133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934134, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934134) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934134, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934134) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) . BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01934135) - 1) AS ?thisPositionOn30) . BIND(?this AS ?pfs3t148) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse26) . FILTER ((BOUND(?thisPositionOn29) && BOUND(?thisPositionOn30))) . BIND(URI(CONCAT(STR(?this), '#MF_01934a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP0ABU0154 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0156 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ABU0MF_01934149 . ?templateMotifSequenceMatchRegionP0ABU0154 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0155 . ?templateMotifSequenceMatchBeginP0ABU0155 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0150 ; faldo:reference isoform:P0ABU0-1 . ?templateMotifSequenceProfileAlignmentOperationP0ABU0156 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . ?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934160 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ABU0MF_01934151 . ?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934159 . ?targetMotifMatchRegionMatchBeginMF_01934159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934152 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01934160 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934149, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934149) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934149, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionP0ABU0150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934151, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934151) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934151, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934151) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) . BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_01934152) - 1) AS ?thisPositionOn37) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934149, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934149) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934149, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionP0ABU0150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934151, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934151) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934151, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934151) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) . BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_01934152) - 1) AS ?thisPositionOn38) . BIND(?this AS ?pfs3t165) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse34) . FILTER (REGEX('[SAVT]GG[DN]Q', SUBSTR(?thisSequenceValue, ?thisPositionOn37, (?thisPositionOn38 - ?thisPositionOn37)))) . BIND(URI(CONCAT(STR(?this), '#MF_01934a32')) AS ?annotation32) . BIND(?this AS ?pfs31) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch170 faldo:location ?templateMotifSequenceMatchRegionP0ABU0171 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0173 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ABU0MF_01934166 . ?templateMotifSequenceMatchRegionP0ABU0171 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0172 . ?templateMotifSequenceMatchBeginP0ABU0172 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0167 ; faldo:reference isoform:P0ABU0-1 . ?templateMotifSequenceProfileAlignmentOperationP0ABU0173 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . ?targetMotifMatch174 faldo:location ?targetMotifMatchRegionMatch175 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934177 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ABU0MF_01934168 . ?targetMotifMatchRegionMatch175 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934176 . ?targetMotifMatchRegionMatchBeginMF_01934176 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934169 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01934177 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934166, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934166) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934166, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP0ABU0167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934168, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934168) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934168, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934168) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) . BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_01934169) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs3t180) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb41) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse42) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01934a40')) AS ?annotation40) . BIND(?this AS ?pfs39) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch185 faldo:location ?templateMotifSequenceMatchRegionP0ABU0186 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0188 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ABU0MF_01934181 . ?templateMotifSequenceMatchRegionP0ABU0186 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0187 . ?templateMotifSequenceMatchBeginP0ABU0187 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0182 ; faldo:reference isoform:P0ABU0-1 . ?templateMotifSequenceProfileAlignmentOperationP0ABU0188 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . ?targetMotifMatch189 faldo:location ?targetMotifMatchRegionMatch190 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934192 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ABU0MF_01934183 . ?targetMotifMatchRegionMatch190 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934191 . ?targetMotifMatchRegionMatchBeginMF_01934191 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934184 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01934192 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934181, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934181) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934181, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionP0ABU0182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934183, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934183) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934183, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934183) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) . BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_01934184) - 1) AS ?thisPositionOn53) . BIND(?thisPositionOn53 AS ?thisPositionOn54) . BIND(?this AS ?pfs3t195) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01934a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch200 faldo:location ?templateMotifSequenceMatchRegionP0ABU0201 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0203 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ABU0MF_01934196 . ?templateMotifSequenceMatchRegionP0ABU0201 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0202 . ?templateMotifSequenceMatchBeginP0ABU0202 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0197 ; faldo:reference isoform:P0ABU0-1 . ?templateMotifSequenceProfileAlignmentOperationP0ABU0203 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . ?targetMotifMatch204 faldo:location ?targetMotifMatchRegionMatch205 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934207 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ABU0MF_01934198 . ?targetMotifMatchRegionMatch205 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934206 . ?targetMotifMatchRegionMatchBeginMF_01934206 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934199 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01934207 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934196, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934196) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934196, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionP0ABU0197) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1208) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934198, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934198) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934198, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934198) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), '')))), '[^-]', ''))) AS ?step2209) . BIND(((?step2209 + ?targetMotifMatchRegionMatchBeginPositionMF_01934199) - 1) AS ?thisPositionOn61) . BIND(?thisPositionOn61 AS ?thisPositionOn62) . BIND(?this AS ?pfs3t210) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb57) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse58) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_01934a56')) AS ?annotation56) . BIND(?this AS ?pfs55) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch215 faldo:location ?templateMotifSequenceMatchRegionP0ABU0216 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0218 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ABU0MF_01934211 . ?templateMotifSequenceMatchRegionP0ABU0216 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0217 . ?templateMotifSequenceMatchBeginP0ABU0217 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0212 ; faldo:reference isoform:P0ABU0-1 . ?templateMotifSequenceProfileAlignmentOperationP0ABU0218 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . ?targetMotifMatch219 faldo:location ?targetMotifMatchRegionMatch220 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934222 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ABU0MF_01934213 . ?targetMotifMatchRegionMatch220 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934221 . ?targetMotifMatchRegionMatchBeginMF_01934221 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934214 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01934222 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934211, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934211) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934211, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionP0ABU0212) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1223) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934213, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934213) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934213, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934213, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934213) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934213, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), '')))), '[^-]', ''))) AS ?step2224) . BIND(((?step2224 + ?targetMotifMatchRegionMatchBeginPositionMF_01934214) - 1) AS ?thisPositionOn69) . BIND(?thisPositionOn69 AS ?thisPositionOn70) . BIND(?this AS ?pfs3t225) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb65) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse66) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_01934a64')) AS ?annotation64) . BIND(?this AS ?pfs63) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch230 faldo:location ?templateMotifSequenceMatchRegionP0ABU0231 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0233 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ABU0MF_01934226 . ?templateMotifSequenceMatchRegionP0ABU0231 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0232 . ?templateMotifSequenceMatchBeginP0ABU0232 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0227 ; faldo:reference isoform:P0ABU0-1 . ?templateMotifSequenceProfileAlignmentOperationP0ABU0233 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . ?targetMotifMatch234 faldo:location ?targetMotifMatchRegionMatch235 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934237 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ABU0MF_01934228 . ?targetMotifMatchRegionMatch235 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934236 . ?targetMotifMatchRegionMatchBeginMF_01934236 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934229 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01934237 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934226, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934226) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934226, CONCAT('^(?:-*[^-]){', STR(((258 - ?templateMotifSequenceMatchBeginPositionP0ABU0227) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1238) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934228, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934228) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1238), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934228, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934228) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1238), '}'), '')))), '[^-]', ''))) AS ?step2239) . BIND(((?step2239 + ?targetMotifMatchRegionMatchBeginPositionMF_01934229) - 1) AS ?thisPositionOn77) . BIND(?thisPositionOn77 AS ?thisPositionOn78) . BIND(?this AS ?pfs3t240) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse74) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01934a72')) AS ?annotation72) . BIND(?this AS ?pfs71) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch245 faldo:location ?templateMotifSequenceMatchRegionP0ABU0246 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0248 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ABU0MF_01934241 . ?templateMotifSequenceMatchRegionP0ABU0246 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0247 . ?templateMotifSequenceMatchBeginP0ABU0247 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0242 ; faldo:reference isoform:P0ABU0-1 . ?templateMotifSequenceProfileAlignmentOperationP0ABU0248 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . ?targetMotifMatch249 faldo:location ?targetMotifMatchRegionMatch250 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934252 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ABU0MF_01934243 . ?targetMotifMatchRegionMatch250 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934251 . ?targetMotifMatchRegionMatchBeginMF_01934251 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934244 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01934252 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934241, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934241) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934241, CONCAT('^(?:-*[^-]){', STR(((273 - ?templateMotifSequenceMatchBeginPositionP0ABU0242) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1253) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934243, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934243) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934243, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934243) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), '')))), '[^-]', ''))) AS ?step2254) . BIND(((?step2254 + ?targetMotifMatchRegionMatchBeginPositionMF_01934244) - 1) AS ?thisPositionOn85) . BIND(?thisPositionOn85 AS ?thisPositionOn86) . BIND(?this AS ?pfs3t255) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb81) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse82) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01934a80')) AS ?annotation80) . BIND(?this AS ?pfs79) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch260 faldo:location ?templateMotifSequenceMatchRegionP0ABU0261 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0263 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ABU0MF_01934256 . ?templateMotifSequenceMatchRegionP0ABU0261 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0262 . ?templateMotifSequenceMatchBeginP0ABU0262 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0257 ; faldo:reference isoform:P0ABU0-1 . ?templateMotifSequenceProfileAlignmentOperationP0ABU0263 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . ?targetMotifMatch264 faldo:location ?targetMotifMatchRegionMatch265 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934267 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ABU0MF_01934258 . ?targetMotifMatchRegionMatch265 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934266 . ?targetMotifMatchRegionMatchBeginMF_01934266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934259 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01934267 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934256, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934256) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934256, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionP0ABU0257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1268) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934258, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934258) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934258, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934258) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), '')))), '[^-]', ''))) AS ?step2269) . BIND(((?step2269 + ?targetMotifMatchRegionMatchBeginPositionMF_01934259) - 1) AS ?thisPositionOn91) . BIND(?thisPositionOn91 AS ?thisPositionOn92) . BIND(?this AS ?pfs3t270) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb89) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse90) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01934a88')) AS ?annotation88) . BIND(?this AS ?pfs87) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch275 faldo:location ?templateMotifSequenceMatchRegionP0ABU0276 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0278 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0ABU0MF_01934271 . ?templateMotifSequenceMatchRegionP0ABU0276 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0277 . ?templateMotifSequenceMatchBeginP0ABU0277 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0272 ; faldo:reference isoform:P0ABU0-1 . ?templateMotifSequenceProfileAlignmentOperationP0ABU0278 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . ?targetMotifMatch279 faldo:location ?targetMotifMatchRegionMatch280 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934282 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0ABU0MF_01934273 . ?targetMotifMatchRegionMatch280 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934281 . ?targetMotifMatchRegionMatchBeginMF_01934281 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934274 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01934282 edam:has_input signature:MF_01934 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934271, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934271) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934271, CONCAT('^(?:-*[^-]){', STR(((258 - ?templateMotifSequenceMatchBeginPositionP0ABU0272) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1283) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934273, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934273) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934273, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934273) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), '')))), '[^-]', ''))) AS ?step2284) . BIND(((?step2284 + ?targetMotifMatchRegionMatchBeginPositionMF_01934274) - 1) AS ?thisPositionOn97) . BIND(?thisPositionOn97 AS ?thisPositionOn98) . BIND(?this AS ?pfs3t285) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse96) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn97, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01934a94')) AS ?annotation94) . BIND(?this AS ?pfs93) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag286) . } BIND(IF(BOUND(?taghydrogencarbonate), ?caseWithTag286, ?UNBOUND_VARIABLE) AS ?case7) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1117 . BIND(?this AS ?case8) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1117 . })) . BIND(?this AS ?case9) . } }