CONSTRUCT { _:675243 up:source unirule:MF_01953 . _:675244 up:source unirule:MF_01953 . _:675245 up:source unirule:MF_01953 . _:675246 up:source unirule:MF_01953 . _:675247 up:source unirule:MF_01953 . _:675248 up:source unirule:MF_01953 . _:675249 up:source unirule:MF_01953 . _:675250 up:source unirule:MF_01953 . _:675251 up:source unirule:MF_01953 . _:675252 up:source unirule:MF_01953 . _:675253 up:source unirule:MF_01953 . _:675254 up:source unirule:MF_01953 . _:675255 up:source unirule:MF_01953 . _:675256 up:source unirule:MF_01953 . _:675257 up:source unirule:MF_01953 . _:675258 up:source unirule:MF_01953 . _:675259 up:source unirule:MF_01953 . _:675260 up:source unirule:MF_01953 . _:675261 up:source unirule:MF_01953 . _:675262 up:source unirule:MF_01953 . _:675263 up:source unirule:MF_01953 . _:675264 up:source unirule:MF_01953 . _:675265 up:source unirule:MF_01953 . _:675266 up:source unirule:MF_01953 . _:675267 up:source unirule:MF_01953 . _:675268 up:source unirule:MF_01953 . _:675269 up:source unirule:MF_01953 . ?this up:annotation ?annotation0 , ?annotation2 , ?annotation3 , ?annotation5 ; up:classifiedWith GO:0005737 , GO:0009039 , GO:0019627 , keyword:378 , keyword:963 . ?annotation0 up:activity ?activity1 ; rdf:type up:Catalytic_Activity_Annotation . ?activity1 up:catalyticActivity <http://rdf.rhea-db.org/20557>; up:enzymeClass <http://purl.uniprot.org/enzyme/3.5.1.5>. ?annotation2 a up:Pathway_Annotation ; rdfs:comment 'Nitrogen metabolism; urea degradation; CO(2) and NH(3) from urea (urease route): step 1/1.' . ?annotation3 a up:Subcellular_Location_Annotation . ?annotation3li4 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation5 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.' . ?case7 up:classifiedWith GO:0016151 , keyword:479 , keyword:533 . ?case8 up:alternativeName ?name10 ; up:recommendedName ?name9 . ?name9 up:ecName '3.5.1.5' ; up:fullName 'Urease subunit beta' ; rdf:type up:Structured_Name . ?name10 up:fullName 'Urea amidohydrolase subunit beta' ; rdf:type up:Structured_Name . ?case12 up:alternativeName ?name14 ; up:recommendedName ?name13 . ?name13 up:ecName '3.5.1.5' ; up:fullName 'Urease subunit alpha' ; rdf:type up:Structured_Name . ?name14 up:fullName 'Urea amidohydrolase subunit alpha' ; rdf:type up:Structured_Name . ?pfs18 up:annotation ?annotation19 , ?annotation25 , ?annotation31 , ?annotation37 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; up:ligand ?ligand22 ; rdf:type up:Binding_Site_Annotation . ?pfsb20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?ligand22 rdfs:subClassOf chebi:49786 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; up:ligand ?ligand28 ; rdf:type up:Binding_Site_Annotation . ?pfsb26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?ligand28 rdfs:subClassOf chebi:49786 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'via carbamate group' . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:49786 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; up:ligand ?ligand40 ; rdf:type up:Binding_Site_Annotation . ?pfsb38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?ligand40 rdfs:subClassOf chebi:49786 . ?pfs43 up:annotation ?annotation44 , ?annotation50 , ?annotation56 . ?annotation44 faldo:begin ?pfsb45 ; faldo:end ?pfse46 ; up:ligand ?ligand47 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'via carbamate group' . ?pfsb45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?ligand47 rdfs:subClassOf chebi:49786 . ?annotation50 faldo:begin ?pfsb51 ; faldo:end ?pfse52 ; up:ligand ?ligand53 ; rdf:type up:Binding_Site_Annotation . ?pfsb51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfse52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?ligand53 rdfs:subClassOf chebi:49786 . ?annotation56 faldo:begin ?pfsb57 ; faldo:end ?pfse58 ; up:ligand ?ligand59 ; rdf:type up:Binding_Site_Annotation . ?pfsb57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse58 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?ligand59 rdfs:subClassOf chebi:49786 . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; up:ligand ?ligand66 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'via carbamate group' . ?pfsb64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?ligand66 rdfs:subClassOf chebi:49786 . ?pfs69 up:annotation ?annotation70 . ?annotation70 faldo:begin ?pfsb71 ; faldo:end ?pfse72 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor' . ?pfsb71 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse72 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?pfs75 up:annotation ?annotation76 . ?annotation76 faldo:begin ?pfsb77 ; faldo:end ?pfse78 ; up:ligand ?ligand79 ; rdf:type up:Binding_Site_Annotation . ?pfsb77 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . ?pfse78 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?ligand79 rdfs:subClassOf ?molecule80 . ?molecule80 rdfs:label 'substrate' . ?pfs83 up:annotation ?annotation84 . ?annotation84 faldo:begin ?pfsb85 ; faldo:end ?pfse86 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-carboxylysine' . ?pfsb85 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?pfse86 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . _:675270 a rdf:Statement ; up:attribution _:675243 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:675271 a rdf:Statement ; up:attribution _:675244 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:675272 a rdf:Statement ; up:attribution _:675245 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:675273 a rdf:Statement ; up:attribution _:675246 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:675274 a rdf:Statement ; up:attribution _:675247 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:675275 a rdf:Statement ; up:attribution _:675248 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:675276 a rdf:Statement ; up:attribution _:675249 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009039 . _:675277 a rdf:Statement ; up:attribution _:675250 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019627 . _:675278 a rdf:Statement ; up:attribution _:675251 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:675279 a rdf:Statement ; up:attribution _:675252 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:675280 a rdf:Statement ; up:attribution _:675253 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:533 . _:675281 a rdf:Statement ; up:attribution _:675254 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object GO:0016151 . _:675282 a rdf:Statement ; up:attribution _:675255 ; rdf:subject ?case8 ; rdf:predicate up:recommendedName ; rdf:object ?name9 . _:675283 a rdf:Statement ; up:attribution _:675256 ; rdf:subject ?case8 ; rdf:predicate up:alternativeName ; rdf:object ?name10 . _:675284 a rdf:Statement ; up:attribution _:675257 ; rdf:subject ?case12 ; rdf:predicate up:recommendedName ; rdf:object ?name13 . _:675285 a rdf:Statement ; up:attribution _:675258 ; rdf:subject ?case12 ; rdf:predicate up:alternativeName ; rdf:object ?name14 . _:675286 a rdf:Statement ; up:source unirule:MF_01953 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:675287 a rdf:Statement ; up:attribution _:675259 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:675288 a rdf:Statement ; up:source unirule:MF_01953 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:675289 a rdf:Statement ; up:attribution _:675260 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:675290 a rdf:Statement ; up:source unirule:MF_01953 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:675291 a rdf:Statement ; up:attribution _:675261 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:675292 a rdf:Statement ; up:source unirule:MF_01953 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:675293 a rdf:Statement ; up:attribution _:675262 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:675294 a rdf:Statement ; up:source unirule:MF_01953 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:675295 a rdf:Statement ; up:attribution _:675263 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:675296 a rdf:Statement ; up:source unirule:MF_01953 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:675297 a rdf:Statement ; up:attribution _:675264 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:675298 a rdf:Statement ; up:source unirule:MF_01953 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:675299 a rdf:Statement ; up:attribution _:675265 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:675300 a rdf:Statement ; up:source unirule:MF_01953 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:675301 a rdf:Statement ; up:attribution _:675266 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:675302 a rdf:Statement ; up:source unirule:MF_01953 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . _:675303 a rdf:Statement ; up:attribution _:675267 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . _:675304 a rdf:Statement ; up:source unirule:MF_01953 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:675305 a rdf:Statement ; up:attribution _:675268 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:675306 a rdf:Statement ; up:source unirule:MF_01953 ; rdf:subject ?pfs83 ; rdf:predicate up:annotation ; rdf:object ?annotation84 . _:675307 a rdf:Statement ; up:attribution _:675269 ; rdf:subject ?pfs83 ; rdf:predicate up:annotation ; rdf:object ?annotation84 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01953 #Rule MF_01953 Created by:bridge on:2006-04-10 Modified by:ecastro on:2023-06-01 VALUES ?supertaxon89 {taxon:2 taxon:2281 taxon:183963} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01953 . ?thisOrganism rdfs:subClassOf+ ?supertaxon89 . BIND(URI(CONCAT(STR(?this), '#MF_01953a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_01953a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01953a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01953a5')) AS ?annotation5) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionP1831495 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1831497 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP18314MF_0195390 . ?templateMotifSequenceMatchRegionP1831495 faldo:begin ?templateMotifSequenceMatchBeginP1831496 . ?templateMotifSequenceMatchBeginP1831496 faldo:position ?templateMotifSequenceMatchBeginPositionP1831491 ; faldo:reference isoform:P18314-1 . ?templateMotifSequenceProfileAlignmentOperationP1831497 edam:has_input signature:MF_01953 ; rdf:type edam:operation_0300 . ?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01953101 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP18314MF_0195392 . ?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01953100 . ?targetMotifMatchRegionMatchBeginMF_01953100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0195393 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01953101 edam:has_input signature:MF_01953 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_2) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18314MF_0195390, 1, (STRLEN(?templateMotifCigarP18314MF_0195390) - STRLEN(REPLACE(?templateMotifCigarP18314MF_0195390, CONCAT('^(?:-*[^-]){', STR(((134 - ?templateMotifSequenceMatchBeginPositionP1831491) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18314MF_0195392, 1, (STRLEN(?targetMotifMatchCigarP18314MF_0195392) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_0195392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18314MF_0195392, 1, (STRLEN(?targetMotifMatchCigarP18314MF_0195392) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_0195392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) . BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0195393) - 1) AS ?thisPositionOn23) . BIND(?thisPositionOn23 AS ?thisPositionOn24) . BIND(?this AS ?pfs1t104) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18314MF_0195390, 1, (STRLEN(?templateMotifCigarP18314MF_0195390) - STRLEN(REPLACE(?templateMotifCigarP18314MF_0195390, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionP1831491) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18314MF_0195392, 1, (STRLEN(?targetMotifMatchCigarP18314MF_0195392) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_0195392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18314MF_0195392, 1, (STRLEN(?targetMotifMatchCigarP18314MF_0195392) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_0195392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) . BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0195393) - 1) AS ?thisPositionOn29) . BIND(?thisPositionOn29 AS ?thisPositionOn30) . BIND(?this AS ?pfs1t107) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18314MF_0195390, 1, (STRLEN(?templateMotifCigarP18314MF_0195390) - STRLEN(REPLACE(?templateMotifCigarP18314MF_0195390, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP1831491) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18314MF_0195392, 1, (STRLEN(?targetMotifMatchCigarP18314MF_0195392) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_0195392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18314MF_0195392, 1, (STRLEN(?targetMotifMatchCigarP18314MF_0195392) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_0195392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) . BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0195393) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs1t110) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'K')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18314MF_0195390, 1, (STRLEN(?templateMotifCigarP18314MF_0195390) - STRLEN(REPLACE(?templateMotifCigarP18314MF_0195390, CONCAT('^(?:-*[^-]){', STR(((360 - ?templateMotifSequenceMatchBeginPositionP1831491) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18314MF_0195392, 1, (STRLEN(?targetMotifMatchCigarP18314MF_0195392) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_0195392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18314MF_0195392, 1, (STRLEN(?targetMotifMatchCigarP18314MF_0195392) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_0195392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) . BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_0195393) - 1) AS ?thisPositionOn41) . BIND(?thisPositionOn41 AS ?thisPositionOn42) . BIND(?this AS ?pfs1t113) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'D')) . BIND(?this AS ?pfs18) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionP18314119 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP18314121 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP18314MF_01953114 . ?templateMotifSequenceMatchRegionP18314119 faldo:begin ?templateMotifSequenceMatchBeginP18314120 . ?templateMotifSequenceMatchBeginP18314120 faldo:position ?templateMotifSequenceMatchBeginPositionP18314115 ; faldo:reference isoform:P18314-1 . ?templateMotifSequenceProfileAlignmentOperationP18314121 edam:has_input signature:MF_01953 ; rdf:type edam:operation_0300 . ?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01953125 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP18314MF_01953116 . ?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01953124 . ?targetMotifMatchRegionMatchBeginMF_01953124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01953117 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01953125 edam:has_input signature:MF_01953 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18314MF_01953114, 1, (STRLEN(?templateMotifCigarP18314MF_01953114) - STRLEN(REPLACE(?templateMotifCigarP18314MF_01953114, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP18314115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18314MF_01953116, 1, (STRLEN(?targetMotifMatchCigarP18314MF_01953116) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_01953116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18314MF_01953116, 1, (STRLEN(?targetMotifMatchCigarP18314MF_01953116) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_01953116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) . BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_01953117) - 1) AS ?thisPositionOn48) . BIND(?thisPositionOn48 AS ?thisPositionOn49) . BIND(?this AS ?pfs2t128) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'K')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18314MF_01953114, 1, (STRLEN(?templateMotifCigarP18314MF_01953114) - STRLEN(REPLACE(?templateMotifCigarP18314MF_01953114, CONCAT('^(?:-*[^-]){', STR(((246 - ?templateMotifSequenceMatchBeginPositionP18314115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18314MF_01953116, 1, (STRLEN(?targetMotifMatchCigarP18314MF_01953116) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_01953116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18314MF_01953116, 1, (STRLEN(?targetMotifMatchCigarP18314MF_01953116) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_01953116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) . BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01953117) - 1) AS ?thisPositionOn54) . BIND(?thisPositionOn54 AS ?thisPositionOn55) . BIND(?this AS ?pfs2t131) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18314MF_01953114, 1, (STRLEN(?templateMotifCigarP18314MF_01953114) - STRLEN(REPLACE(?templateMotifCigarP18314MF_01953114, CONCAT('^(?:-*[^-]){', STR(((272 - ?templateMotifSequenceMatchBeginPositionP18314115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18314MF_01953116, 1, (STRLEN(?targetMotifMatchCigarP18314MF_01953116) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_01953116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18314MF_01953116, 1, (STRLEN(?targetMotifMatchCigarP18314MF_01953116) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_01953116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) . BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_01953117) - 1) AS ?thisPositionOn60) . BIND(?thisPositionOn60 AS ?thisPositionOn61) . BIND(?this AS ?pfs2t134) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'H')) . BIND(?this AS ?pfs43) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP18314140 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP18314142 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP18314MF_01953135 . ?templateMotifSequenceMatchRegionP18314140 faldo:begin ?templateMotifSequenceMatchBeginP18314141 . ?templateMotifSequenceMatchBeginP18314141 faldo:position ?templateMotifSequenceMatchBeginPositionP18314136 ; faldo:reference isoform:P18314-1 . ?templateMotifSequenceProfileAlignmentOperationP18314142 edam:has_input signature:MF_01953 ; rdf:type edam:operation_0300 . ?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01953146 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP18314MF_01953137 . ?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01953145 . ?targetMotifMatchRegionMatchBeginMF_01953145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01953138 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01953146 edam:has_input signature:MF_01953 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFT_4) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18314MF_01953135, 1, (STRLEN(?templateMotifCigarP18314MF_01953135) - STRLEN(REPLACE(?templateMotifCigarP18314MF_01953135, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP18314136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18314MF_01953137, 1, (STRLEN(?targetMotifMatchCigarP18314MF_01953137) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_01953137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18314MF_01953137, 1, (STRLEN(?targetMotifMatchCigarP18314MF_01953137) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_01953137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) . BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_01953138) - 1) AS ?thisPositionOn67) . BIND(?thisPositionOn67 AS ?thisPositionOn68) . BIND(?this AS ?pfs3t149) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'K')) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP18314155 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP18314157 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP18314MF_01953150 . ?templateMotifSequenceMatchRegionP18314155 faldo:begin ?templateMotifSequenceMatchBeginP18314156 . ?templateMotifSequenceMatchBeginP18314156 faldo:position ?templateMotifSequenceMatchBeginPositionP18314151 ; faldo:reference isoform:P18314-1 . ?templateMotifSequenceProfileAlignmentOperationP18314157 edam:has_input signature:MF_01953 ; rdf:type edam:operation_0300 . ?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01953161 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP18314MF_01953152 . ?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01953160 . ?targetMotifMatchRegionMatchBeginMF_01953160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01953153 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01953161 edam:has_input signature:MF_01953 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18314MF_01953150, 1, (STRLEN(?templateMotifCigarP18314MF_01953150) - STRLEN(REPLACE(?templateMotifCigarP18314MF_01953150, CONCAT('^(?:-*[^-]){', STR(((320 - ?templateMotifSequenceMatchBeginPositionP18314151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18314MF_01953152, 1, (STRLEN(?targetMotifMatchCigarP18314MF_01953152) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_01953152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18314MF_01953152, 1, (STRLEN(?targetMotifMatchCigarP18314MF_01953152) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_01953152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) . BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_01953153) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs4t164) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb71) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse72) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01953a70')) AS ?annotation70) . BIND(?this AS ?pfs69) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionP18314170 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP18314172 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP18314MF_01953165 . ?templateMotifSequenceMatchRegionP18314170 faldo:begin ?templateMotifSequenceMatchBeginP18314171 . ?templateMotifSequenceMatchBeginP18314171 faldo:position ?templateMotifSequenceMatchBeginPositionP18314166 ; faldo:reference isoform:P18314-1 . ?templateMotifSequenceProfileAlignmentOperationP18314172 edam:has_input signature:MF_01953 ; rdf:type edam:operation_0300 . ?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01953176 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP18314MF_01953167 . ?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01953175 . ?targetMotifMatchRegionMatchBeginMF_01953175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01953168 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01953176 edam:has_input signature:MF_01953 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18314MF_01953165, 1, (STRLEN(?templateMotifCigarP18314MF_01953165) - STRLEN(REPLACE(?templateMotifCigarP18314MF_01953165, CONCAT('^(?:-*[^-]){', STR(((219 - ?templateMotifSequenceMatchBeginPositionP18314166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18314MF_01953167, 1, (STRLEN(?targetMotifMatchCigarP18314MF_01953167) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_01953167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18314MF_01953167, 1, (STRLEN(?targetMotifMatchCigarP18314MF_01953167) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_01953167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) . BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_01953168) - 1) AS ?thisPositionOn81) . BIND(?thisPositionOn81 AS ?thisPositionOn82) . BIND(?this AS ?pfs4t179) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb77) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse78) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01953a76')) AS ?annotation76) . BIND(?this AS ?pfs75) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch184 faldo:location ?templateMotifSequenceMatchRegionP18314185 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP18314187 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP18314MF_01953180 . ?templateMotifSequenceMatchRegionP18314185 faldo:begin ?templateMotifSequenceMatchBeginP18314186 . ?templateMotifSequenceMatchBeginP18314186 faldo:position ?templateMotifSequenceMatchBeginPositionP18314181 ; faldo:reference isoform:P18314-1 . ?templateMotifSequenceProfileAlignmentOperationP18314187 edam:has_input signature:MF_01953 ; rdf:type edam:operation_0300 . ?targetMotifMatch188 faldo:location ?targetMotifMatchRegionMatch189 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01953191 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP18314MF_01953182 . ?targetMotifMatchRegionMatch189 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01953190 . ?targetMotifMatchRegionMatchBeginMF_01953190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01953183 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01953191 edam:has_input signature:MF_01953 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP18314MF_01953180, 1, (STRLEN(?templateMotifCigarP18314MF_01953180) - STRLEN(REPLACE(?templateMotifCigarP18314MF_01953180, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP18314181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP18314MF_01953182, 1, (STRLEN(?targetMotifMatchCigarP18314MF_01953182) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_01953182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP18314MF_01953182, 1, (STRLEN(?targetMotifMatchCigarP18314MF_01953182) - STRLEN(REPLACE(?targetMotifMatchCigarP18314MF_01953182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) . BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_01953183) - 1) AS ?thisPositionOn87) . BIND(?thisPositionOn87 AS ?thisPositionOn88) . BIND(?this AS ?pfs4t194) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb85) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse86) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01953a84')) AS ?annotation84) . BIND(?this AS ?pfs83) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag195) . } BIND(IF(BOUND(?tagFT_4), ?caseWithTag195, ?UNBOUND_VARIABLE) AS ?case6) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag196) . } BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag196, ?UNBOUND_VARIABLE) AS ?case7) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:213849 . BIND(?this AS ?case8) . BIND(URI(CONCAT(STR(?this), '#MF_01953a9')) AS ?name9) . BIND(URI(CONCAT(STR(?this), '#MF_01953a10')) AS ?name10) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag197) . } BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag197, ?UNBOUND_VARIABLE) AS ?case11) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:213849 . })) . BIND(?this AS ?case12) . BIND(URI(CONCAT(STR(?this), '#MF_01953a13')) AS ?name13) . BIND(URI(CONCAT(STR(?this), '#MF_01953a14')) AS ?name14) . } OPTIONAL { ?this a up:Protein . VALUES ?supertaxon198 {taxon:1298 taxon:2284} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon198 . BIND(?this AS ?case15) . } OPTIONAL { ?this a up:Protein . { ?this up:organism ?thisOrganism . ?thisOrganism up:scientificName ?name199 . FILTER (CONTAINS(?containsName200, ?name199)) . FILTER (! (EXISTS { VALUES ?supertaxon201 {taxon:1298 taxon:2284 taxon:213849} ?thisOrganism rdfs:subClassOf+ ?supertaxon201 . })) . } UNION { ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1883 . } BIND(?this AS ?case16) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism up:scientificName ?name202 . FILTER (! (CONTAINS(?containsName203, ?name202))) . FILTER (! (EXISTS { VALUES ?supertaxon204 {taxon:1298 taxon:2284 taxon:213849 taxon:1883} ?thisOrganism rdfs:subClassOf+ ?supertaxon204 . })) . BIND(?this AS ?case17) . } }