CONSTRUCT { _:711008 up:source unirule:MF_02041 . _:711009 up:source unirule:MF_02041 . _:711010 up:source unirule:MF_02041 . _:711011 up:source unirule:MF_02041 . _:711012 up:source unirule:MF_02041 . _:711013 up:source unirule:MF_02041 . _:711014 up:source unirule:MF_02041 . _:711015 up:source unirule:MF_02041 . _:711016 up:source unirule:MF_02041 . _:711017 up:source unirule:MF_02041 . _:711018 up:source unirule:MF_02041 . _:711019 up:source unirule:MF_02041 . _:711020 up:source unirule:MF_02041 . _:711021 up:source unirule:MF_02041 . _:711022 up:source unirule:MF_02041 . _:711023 up:source unirule:MF_02041 . _:711024 up:source unirule:MF_02041 . _:711025 up:source unirule:MF_02041 . _:711026 up:source unirule:MF_02041 . _:711027 up:source unirule:MF_02041 . _:711028 up:source unirule:MF_02041 . _:711029 up:source unirule:MF_02041 . _:711030 up:source unirule:MF_02041 . _:711031 up:source unirule:MF_02041 . _:711032 up:source unirule:MF_02041 . _:711033 up:source unirule:MF_02041 . _:711034 up:source unirule:MF_02041 . _:711035 up:source unirule:MF_02041 . _:711036 up:source unirule:MF_02041 . _:711037 up:source unirule:MF_02041 . _:711038 up:source unirule:MF_02041 . _:711039 up:source unirule:MF_02041 . _:711040 up:source unirule:MF_02041 . _:711041 up:source unirule:MF_02041 . _:711042 up:source unirule:MF_02041 . ?this up:annotation ?annotation0 , ?annotation1 , ?annotation3 , ?annotation5 , ?annotation7 , ?annotation9 , ?annotation10 ; up:classifiedWith GO:0000049 , GO:0002943 , GO:0010181 , GO:0017150 , keyword:285 , keyword:288 , keyword:521 , keyword:560 , keyword:694 , keyword:819 , keyword:820 . ?annotation0 a up:Function_Annotation ; rdfs:comment 'Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs.' . ?annotation1 up:activity ?activity2 ; rdf:type up:Catalytic_Activity_Annotation . ?activity2 up:catalyticActivity <http://rdf.rhea-db.org/53336>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.3.1.91>. ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/53340>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.3.1.91>. ?annotation5 up:activity ?activity6 ; rdf:type up:Catalytic_Activity_Annotation . ?activity6 up:catalyticActivity <http://rdf.rhea-db.org/53344>. ?annotation7 up:activity ?activity8 ; rdf:type up:Catalytic_Activity_Annotation . ?activity8 up:catalyticActivity <http://rdf.rhea-db.org/53348>. ?annotation9 up:cofactor chebi:58210 ; rdf:type up:Cofactor_Annotation . ?annotation10 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the Dus family. DusA subfamily.' . ?case11 up:alternativeName ?name13 , ?name14 ; up:recommendedName ?name12 . ?name12 up:ecName '1.3.1.-' , '1.3.1.91' ; up:fullName 'tRNA-dihydrouridine(20/20a) synthase' ; rdf:type up:Structured_Name . ?name13 up:fullName 'U20-specific dihydrouridine synthase' ; up:shortName 'U20-specific Dus' ; rdf:type up:Structured_Name . ?name14 up:fullName 'tRNA-dihydrouridine synthase A' ; rdf:type up:Structured_Name . ?case15 up:alternativeName ?name17 ; up:recommendedName ?name16 . ?name16 up:ecName '1.3.1.-' , '1.3.1.91' ; up:fullName 'tRNA-dihydrouridine(20/20a) synthase' ; rdf:type up:Structured_Name . ?name17 up:fullName 'DusA-like U20-specific dihydrouridine synthase' ; up:shortName 'U20-specific Dus' ; rdf:type up:Structured_Name . ?pfs18 up:annotation ?annotation19 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; up:ligand ?ligand22 ; rdf:type up:Binding_Site_Annotation . ?pfsb20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?ligand22 rdfs:subClassOf chebi:58210 . ?pfs25 up:annotation ?annotation26 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; up:ligand ?ligand29 ; rdf:type up:Binding_Site_Annotation . ?pfsb27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?ligand29 rdfs:subClassOf chebi:58210 . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; up:ligand ?ligand36 ; rdf:type up:Binding_Site_Annotation . ?pfsb34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand36 rdfs:subClassOf chebi:58210 . ?pfs39 up:annotation ?annotation40 . ?annotation40 faldo:begin ?pfsb41 ; faldo:end ?pfse42 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor' . ?pfsb41 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfse42 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfs45 up:annotation ?annotation46 . ?annotation46 faldo:begin ?pfsb47 ; faldo:end ?pfse48 ; up:ligand ?ligand49 ; rdf:type up:Binding_Site_Annotation . ?pfsb47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfse48 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?ligand49 rdfs:subClassOf chebi:58210 . ?pfs52 up:annotation ?annotation53 . ?annotation53 faldo:begin ?pfsb54 ; faldo:end ?pfse55 ; up:ligand ?ligand56 ; rdf:type up:Binding_Site_Annotation . ?pfsb54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfse55 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?ligand56 rdfs:subClassOf chebi:58210 . ?pfs59 up:annotation ?annotation60 . ?annotation60 faldo:begin ?pfsb61 ; faldo:end ?pfse62 ; up:ligand ?ligand63 ; rdf:type up:Binding_Site_Annotation . ?pfsb61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?pfse62 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?ligand63 rdfs:subClassOf chebi:58210 . ?pfs66 up:annotation ?annotation67 . ?annotation67 faldo:begin ?pfsb68 ; faldo:end ?pfse69 ; rdf:type up:Site_Annotation ; rdfs:comment 'Interacts with tRNA' . ?pfsb68 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?pfse69 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?pfs72 up:annotation ?annotation73 . ?annotation73 faldo:begin ?pfsb74 ; faldo:end ?pfse75 ; rdf:type up:Site_Annotation ; rdfs:comment 'Interacts with tRNA; defines subfamily-specific binding signature' . ?pfsb74 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?pfse75 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?pfs78 up:annotation ?annotation79 . ?annotation79 faldo:begin ?pfsb80 ; faldo:end ?pfse81 ; rdf:type up:Site_Annotation ; rdfs:comment 'Interacts with tRNA' . ?pfsb80 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?pfse81 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?pfs84 up:annotation ?annotation85 . ?annotation85 faldo:begin ?pfsb86 ; faldo:end ?pfse87 ; rdf:type up:Site_Annotation ; rdfs:comment 'Interacts with tRNA; defines subfamily-specific binding signature' . ?pfsb86 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . ?pfse87 faldo:position ?thisPositionOn89 ; rdf:type faldo:ExactPosition . ?pfs90 up:annotation ?annotation91 . ?annotation91 faldo:begin ?pfsb92 ; faldo:end ?pfse93 ; rdf:type up:Site_Annotation ; rdfs:comment 'Interacts with tRNA; defines subfamily-specific binding signature' . ?pfsb92 faldo:position ?thisPositionOn94 ; rdf:type faldo:ExactPosition . ?pfse93 faldo:position ?thisPositionOn95 ; rdf:type faldo:ExactPosition . _:711043 a rdf:Statement ; up:attribution _:711008 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:711044 a rdf:Statement ; up:attribution _:711009 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:711045 a rdf:Statement ; up:attribution _:711010 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:711046 a rdf:Statement ; up:attribution _:711011 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:711047 a rdf:Statement ; up:attribution _:711012 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:711048 a rdf:Statement ; up:attribution _:711013 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:711049 a rdf:Statement ; up:attribution _:711014 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:711050 a rdf:Statement ; up:attribution _:711015 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:285 . _:711051 a rdf:Statement ; up:attribution _:711016 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:288 . _:711052 a rdf:Statement ; up:attribution _:711017 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:521 . _:711053 a rdf:Statement ; up:attribution _:711018 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:711054 a rdf:Statement ; up:attribution _:711019 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:711055 a rdf:Statement ; up:attribution _:711020 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:819 . _:711056 a rdf:Statement ; up:attribution _:711021 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:820 . _:711057 a rdf:Statement ; up:attribution _:711022 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0010181 . _:711058 a rdf:Statement ; up:attribution _:711023 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000049 . _:711059 a rdf:Statement ; up:attribution _:711024 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0017150 . _:711060 a rdf:Statement ; up:attribution _:711025 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0002943 . _:711061 a rdf:Statement ; up:attribution _:711026 ; rdf:subject ?case11 ; rdf:predicate up:recommendedName ; rdf:object ?name12 . _:711062 a rdf:Statement ; up:attribution _:711027 ; rdf:subject ?case11 ; rdf:predicate up:alternativeName ; rdf:object ?name13 . _:711063 a rdf:Statement ; up:attribution _:711028 ; rdf:subject ?case11 ; rdf:predicate up:alternativeName ; rdf:object ?name14 . _:711064 a rdf:Statement ; up:attribution _:711029 ; rdf:subject ?case15 ; rdf:predicate up:recommendedName ; rdf:object ?name16 . _:711065 a rdf:Statement ; up:attribution _:711030 ; rdf:subject ?case15 ; rdf:predicate up:alternativeName ; rdf:object ?name17 . _:711066 a rdf:Statement ; up:source unirule:MF_02041 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:711067 a rdf:Statement ; up:attribution _:711031 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:711068 a rdf:Statement ; up:source unirule:MF_02041 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:711069 a rdf:Statement ; up:attribution _:711032 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:711070 a rdf:Statement ; up:source unirule:MF_02041 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:711071 a rdf:Statement ; up:attribution _:711033 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:711072 a rdf:Statement ; up:source unirule:MF_02041 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:711073 a rdf:Statement ; up:attribution _:711034 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:711074 a rdf:Statement ; up:source unirule:MF_02041 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:711075 a rdf:Statement ; up:attribution _:711035 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:711076 a rdf:Statement ; up:source unirule:MF_02041 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:711077 a rdf:Statement ; up:attribution _:711036 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:711078 a rdf:Statement ; up:source unirule:MF_02041 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:711079 a rdf:Statement ; up:attribution _:711037 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:711080 a rdf:Statement ; up:source unirule:MF_02041 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:711081 a rdf:Statement ; up:attribution _:711038 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:711082 a rdf:Statement ; up:source unirule:MF_02041 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:711083 a rdf:Statement ; up:attribution _:711039 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:711084 a rdf:Statement ; up:source unirule:MF_02041 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:711085 a rdf:Statement ; up:attribution _:711040 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:711086 a rdf:Statement ; up:source unirule:MF_02041 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:711087 a rdf:Statement ; up:attribution _:711041 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:711088 a rdf:Statement ; up:source unirule:MF_02041 ; rdf:subject ?pfs90 ; rdf:predicate up:annotation ; rdf:object ?annotation91 . _:711089 a rdf:Statement ; up:attribution _:711042 ; rdf:subject ?pfs90 ; rdf:predicate up:annotation ; rdf:object ?annotation91 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02041 #Rule MF_02041 Created by:crivoire on:2015-07-20 Modified by:ecastro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02041 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_02041a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_02041a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_02041a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_02041a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_02041a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_02041a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_02041a10')) AS ?annotation10) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch100 faldo:location ?templateMotifSequenceMatchRegionQ5SMC7101 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SMC7103 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SMC7MF_0204196 . ?templateMotifSequenceMatchRegionQ5SMC7101 faldo:begin ?templateMotifSequenceMatchBeginQ5SMC7102 . ?templateMotifSequenceMatchBeginQ5SMC7102 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SMC797 ; faldo:reference isoform:Q5SMC7-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SMC7103 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . ?targetMotifMatch104 faldo:location ?targetMotifMatchRegionMatch105 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02041107 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SMC7MF_0204198 . ?targetMotifMatchRegionMatch105 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02041106 . ?targetMotifMatchRegionMatchBeginMF_02041106 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0204199 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02041107 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SMC7MF_0204196, 1, (STRLEN(?templateMotifCigarQ5SMC7MF_0204196) - STRLEN(REPLACE(?templateMotifCigarQ5SMC7MF_0204196, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionQ5SMC797) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_0204198, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_0204198) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_0204198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_0204198, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_0204198) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_0204198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) . BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0204199) - 1) AS ?thisPositionOn23) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SMC7MF_0204196, 1, (STRLEN(?templateMotifCigarQ5SMC7MF_0204196) - STRLEN(REPLACE(?templateMotifCigarQ5SMC7MF_0204196, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionQ5SMC797) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_0204198, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_0204198) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_0204198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_0204198, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_0204198) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_0204198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) . BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_0204199) - 1) AS ?thisPositionOn24) . BIND(?this AS ?pfs1t112) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) . FILTER (REGEX('PM[VML]', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) . BIND(URI(CONCAT(STR(?this), '#MF_02041a19')) AS ?annotation19) . BIND(?this AS ?pfs18) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionQ5SMC7118 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SMC7120 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SMC7MF_02041113 . ?templateMotifSequenceMatchRegionQ5SMC7118 faldo:begin ?templateMotifSequenceMatchBeginQ5SMC7119 . ?templateMotifSequenceMatchBeginQ5SMC7119 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SMC7114 ; faldo:reference isoform:Q5SMC7-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SMC7120 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . ?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02041124 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SMC7MF_02041115 . ?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02041123 . ?targetMotifMatchRegionMatchBeginMF_02041123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02041116 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02041124 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SMC7MF_02041113, 1, (STRLEN(?templateMotifCigarQ5SMC7MF_02041113) - STRLEN(REPLACE(?templateMotifCigarQ5SMC7MF_02041113, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionQ5SMC7114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041115, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041115) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041115, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041115) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) . BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_02041116) - 1) AS ?thisPositionOn30) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SMC7MF_02041113, 1, (STRLEN(?templateMotifCigarQ5SMC7MF_02041113) - STRLEN(REPLACE(?templateMotifCigarQ5SMC7MF_02041113, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionQ5SMC7114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041115, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041115) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041115, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041115) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) . BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_02041116) - 1) AS ?thisPositionOn31) . BIND(?this AS ?pfs1t129) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, (?thisPositionOn31 - ?thisPositionOn30)) = 'NGG')) . BIND(URI(CONCAT(STR(?this), '#MF_02041a26')) AS ?annotation26) . BIND(?this AS ?pfs25) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionQ5SMC7135 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SMC7137 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SMC7MF_02041130 . ?templateMotifSequenceMatchRegionQ5SMC7135 faldo:begin ?templateMotifSequenceMatchBeginQ5SMC7136 . ?templateMotifSequenceMatchBeginQ5SMC7136 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SMC7131 ; faldo:reference isoform:Q5SMC7-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SMC7137 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . ?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02041141 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SMC7MF_02041132 . ?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02041140 . ?targetMotifMatchRegionMatchBeginMF_02041140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02041133 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02041141 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SMC7MF_02041130, 1, (STRLEN(?templateMotifCigarQ5SMC7MF_02041130) - STRLEN(REPLACE(?templateMotifCigarQ5SMC7MF_02041130, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionQ5SMC7131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041132, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041132) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041132, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041132) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) . BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_02041133) - 1) AS ?thisPositionOn37) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SMC7MF_02041130, 1, (STRLEN(?templateMotifCigarQ5SMC7MF_02041130) - STRLEN(REPLACE(?templateMotifCigarQ5SMC7MF_02041130, CONCAT('^(?:-*[^-]){', STR(((226 - ?templateMotifSequenceMatchBeginPositionQ5SMC7131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041132, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041132) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041132, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041132) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) . BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_02041133) - 1) AS ?thisPositionOn38) . BIND(?this AS ?pfs1t146) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, (?thisPositionOn38 - ?thisPositionOn37)) = 'GR')) . BIND(URI(CONCAT(STR(?this), '#MF_02041a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionQ5SMC7152 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SMC7154 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SMC7MF_02041147 . ?templateMotifSequenceMatchRegionQ5SMC7152 faldo:begin ?templateMotifSequenceMatchBeginQ5SMC7153 . ?templateMotifSequenceMatchBeginQ5SMC7153 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SMC7148 ; faldo:reference isoform:Q5SMC7-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SMC7154 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . ?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02041158 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SMC7MF_02041149 . ?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02041157 . ?targetMotifMatchRegionMatchBeginMF_02041157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02041150 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02041158 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SMC7MF_02041147, 1, (STRLEN(?templateMotifCigarQ5SMC7MF_02041147) - STRLEN(REPLACE(?templateMotifCigarQ5SMC7MF_02041147, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionQ5SMC7148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041149, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041149) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041149, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041149) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) . BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_02041150) - 1) AS ?thisPositionOn43) . BIND(?thisPositionOn43 AS ?thisPositionOn44) . BIND(?this AS ?pfs1t161) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb41) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse42) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_02041a40')) AS ?annotation40) . BIND(?this AS ?pfs39) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch166 faldo:location ?templateMotifSequenceMatchRegionQ5SMC7167 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SMC7169 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SMC7MF_02041162 . ?templateMotifSequenceMatchRegionQ5SMC7167 faldo:begin ?templateMotifSequenceMatchBeginQ5SMC7168 . ?templateMotifSequenceMatchBeginQ5SMC7168 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SMC7163 ; faldo:reference isoform:Q5SMC7-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SMC7169 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . ?targetMotifMatch170 faldo:location ?targetMotifMatchRegionMatch171 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02041173 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SMC7MF_02041164 . ?targetMotifMatchRegionMatch171 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02041172 . ?targetMotifMatchRegionMatchBeginMF_02041172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02041165 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02041173 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SMC7MF_02041162, 1, (STRLEN(?templateMotifCigarQ5SMC7MF_02041162) - STRLEN(REPLACE(?templateMotifCigarQ5SMC7MF_02041162, CONCAT('^(?:-*[^-]){', STR(((63 - ?templateMotifSequenceMatchBeginPositionQ5SMC7163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041164, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041164) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041164, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041164) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) . BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_02041165) - 1) AS ?thisPositionOn50) . BIND(?thisPositionOn50 AS ?thisPositionOn51) . BIND(?this AS ?pfs1t176) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_02041a46')) AS ?annotation46) . BIND(?this AS ?pfs45) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch181 faldo:location ?templateMotifSequenceMatchRegionQ5SMC7182 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SMC7184 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SMC7MF_02041177 . ?templateMotifSequenceMatchRegionQ5SMC7182 faldo:begin ?templateMotifSequenceMatchBeginQ5SMC7183 . ?templateMotifSequenceMatchBeginQ5SMC7183 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SMC7178 ; faldo:reference isoform:Q5SMC7-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SMC7184 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . ?targetMotifMatch185 faldo:location ?targetMotifMatchRegionMatch186 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02041188 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SMC7MF_02041179 . ?targetMotifMatchRegionMatch186 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02041187 . ?targetMotifMatchRegionMatchBeginMF_02041187 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02041180 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02041188 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SMC7MF_02041177, 1, (STRLEN(?templateMotifCigarQ5SMC7MF_02041177) - STRLEN(REPLACE(?templateMotifCigarQ5SMC7MF_02041177, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionQ5SMC7178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041179, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041179) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041179, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041179) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) . BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_02041180) - 1) AS ?thisPositionOn57) . BIND(?thisPositionOn57 AS ?thisPositionOn58) . BIND(?this AS ?pfs1t191) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_02041a53')) AS ?annotation53) . BIND(?this AS ?pfs52) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionQ5SMC7197 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SMC7199 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SMC7MF_02041192 . ?templateMotifSequenceMatchRegionQ5SMC7197 faldo:begin ?templateMotifSequenceMatchBeginQ5SMC7198 . ?templateMotifSequenceMatchBeginQ5SMC7198 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SMC7193 ; faldo:reference isoform:Q5SMC7-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SMC7199 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . ?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02041203 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SMC7MF_02041194 . ?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02041202 . ?targetMotifMatchRegionMatchBeginMF_02041202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02041195 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02041203 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SMC7MF_02041192, 1, (STRLEN(?templateMotifCigarQ5SMC7MF_02041192) - STRLEN(REPLACE(?templateMotifCigarQ5SMC7MF_02041192, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionQ5SMC7193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041194, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041194) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041194, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041194) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) . BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_02041195) - 1) AS ?thisPositionOn64) . BIND(?thisPositionOn64 AS ?thisPositionOn65) . BIND(?this AS ?pfs1t206) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_02041a60')) AS ?annotation60) . BIND(?this AS ?pfs59) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch211 faldo:location ?templateMotifSequenceMatchRegionQ5SMC7212 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SMC7214 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SMC7MF_02041207 . ?templateMotifSequenceMatchRegionQ5SMC7212 faldo:begin ?templateMotifSequenceMatchBeginQ5SMC7213 . ?templateMotifSequenceMatchBeginQ5SMC7213 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SMC7208 ; faldo:reference isoform:Q5SMC7-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SMC7214 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . ?targetMotifMatch215 faldo:location ?targetMotifMatchRegionMatch216 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02041218 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SMC7MF_02041209 . ?targetMotifMatchRegionMatch216 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02041217 . ?targetMotifMatchRegionMatchBeginMF_02041217 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02041210 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02041218 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SMC7MF_02041207, 1, (STRLEN(?templateMotifCigarQ5SMC7MF_02041207) - STRLEN(REPLACE(?templateMotifCigarQ5SMC7MF_02041207, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionQ5SMC7208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041209, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041209) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041209, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041209) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) . BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_02041210) - 1) AS ?thisPositionOn70) . BIND(?thisPositionOn70 AS ?thisPositionOn71) . BIND(?this AS ?pfs1t221) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb68) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse69) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_02041a67')) AS ?annotation67) . BIND(?this AS ?pfs66) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionQ5SMC7227 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SMC7229 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SMC7MF_02041222 . ?templateMotifSequenceMatchRegionQ5SMC7227 faldo:begin ?templateMotifSequenceMatchBeginQ5SMC7228 . ?templateMotifSequenceMatchBeginQ5SMC7228 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SMC7223 ; faldo:reference isoform:Q5SMC7-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SMC7229 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . ?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02041233 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SMC7MF_02041224 . ?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02041232 . ?targetMotifMatchRegionMatchBeginMF_02041232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02041225 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02041233 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SMC7MF_02041222, 1, (STRLEN(?templateMotifCigarQ5SMC7MF_02041222) - STRLEN(REPLACE(?templateMotifCigarQ5SMC7MF_02041222, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionQ5SMC7223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041224, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041224) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041224, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041224) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) . BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_02041225) - 1) AS ?thisPositionOn76) . BIND(?thisPositionOn76 AS ?thisPositionOn77) . BIND(?this AS ?pfs1t236) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb74) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse75) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_02041a73')) AS ?annotation73) . BIND(?this AS ?pfs72) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionQ5SMC7242 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SMC7244 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SMC7MF_02041237 . ?templateMotifSequenceMatchRegionQ5SMC7242 faldo:begin ?templateMotifSequenceMatchBeginQ5SMC7243 . ?templateMotifSequenceMatchBeginQ5SMC7243 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SMC7238 ; faldo:reference isoform:Q5SMC7-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SMC7244 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . ?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02041248 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SMC7MF_02041239 . ?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02041247 . ?targetMotifMatchRegionMatchBeginMF_02041247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02041240 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02041248 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SMC7MF_02041237, 1, (STRLEN(?templateMotifCigarQ5SMC7MF_02041237) - STRLEN(REPLACE(?templateMotifCigarQ5SMC7MF_02041237, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionQ5SMC7238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041239, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041239) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041239, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041239) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) . BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_02041240) - 1) AS ?thisPositionOn82) . BIND(?thisPositionOn82 AS ?thisPositionOn83) . BIND(?this AS ?pfs1t251) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb80) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse81) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_02041a79')) AS ?annotation79) . BIND(?this AS ?pfs78) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionQ5SMC7257 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SMC7259 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SMC7MF_02041252 . ?templateMotifSequenceMatchRegionQ5SMC7257 faldo:begin ?templateMotifSequenceMatchBeginQ5SMC7258 . ?templateMotifSequenceMatchBeginQ5SMC7258 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SMC7253 ; faldo:reference isoform:Q5SMC7-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SMC7259 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . ?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02041263 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SMC7MF_02041254 . ?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02041262 . ?targetMotifMatchRegionMatchBeginMF_02041262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02041255 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02041263 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SMC7MF_02041252, 1, (STRLEN(?templateMotifCigarQ5SMC7MF_02041252) - STRLEN(REPLACE(?templateMotifCigarQ5SMC7MF_02041252, CONCAT('^(?:-*[^-]){', STR(((290 - ?templateMotifSequenceMatchBeginPositionQ5SMC7253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041254, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041254) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041254, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041254) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) . BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_02041255) - 1) AS ?thisPositionOn88) . BIND(?thisPositionOn88 AS ?thisPositionOn89) . BIND(?this AS ?pfs1t266) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb86) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse87) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_02041a85')) AS ?annotation85) . BIND(?this AS ?pfs84) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch271 faldo:location ?templateMotifSequenceMatchRegionQ5SMC7272 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SMC7274 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SMC7MF_02041267 . ?templateMotifSequenceMatchRegionQ5SMC7272 faldo:begin ?templateMotifSequenceMatchBeginQ5SMC7273 . ?templateMotifSequenceMatchBeginQ5SMC7273 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SMC7268 ; faldo:reference isoform:Q5SMC7-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SMC7274 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . ?targetMotifMatch275 faldo:location ?targetMotifMatchRegionMatch276 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02041278 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SMC7MF_02041269 . ?targetMotifMatchRegionMatch276 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02041277 . ?targetMotifMatchRegionMatchBeginMF_02041277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02041270 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02041278 edam:has_input signature:MF_02041 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SMC7MF_02041267, 1, (STRLEN(?templateMotifCigarQ5SMC7MF_02041267) - STRLEN(REPLACE(?templateMotifCigarQ5SMC7MF_02041267, CONCAT('^(?:-*[^-]){', STR(((293 - ?templateMotifSequenceMatchBeginPositionQ5SMC7268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041269, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041269) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SMC7MF_02041269, 1, (STRLEN(?targetMotifMatchCigarQ5SMC7MF_02041269) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SMC7MF_02041269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) . BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_02041270) - 1) AS ?thisPositionOn94) . BIND(?thisPositionOn94 AS ?thisPositionOn95) . BIND(?this AS ?pfs1t281) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb92) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse93) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_02041a91')) AS ?annotation91) . BIND(?this AS ?pfs90) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1224 . BIND(?this AS ?case11) . BIND(URI(CONCAT(STR(?this), '#MF_02041a12')) AS ?name12) . BIND(URI(CONCAT(STR(?this), '#MF_02041a13')) AS ?name13) . BIND(URI(CONCAT(STR(?this), '#MF_02041a14')) AS ?name14) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1224 . })) . BIND(?this AS ?case15) . BIND(URI(CONCAT(STR(?this), '#MF_02041a16')) AS ?name16) . BIND(URI(CONCAT(STR(?this), '#MF_02041a17')) AS ?name17) . } }