CONSTRUCT { _:721787 up:source unirule:MF_02044 . _:721788 up:source unirule:MF_02044 . _:721789 up:source unirule:MF_02044 . _:721790 up:source unirule:MF_02044 . _:721791 up:source unirule:MF_02044 . _:721792 up:source unirule:MF_02044 . _:721793 up:source unirule:MF_02044 . _:721794 up:source unirule:MF_02044 . _:721795 up:source unirule:MF_02044 . _:721796 up:source unirule:MF_02044 . _:721797 up:source unirule:MF_02044 . _:721798 up:source unirule:MF_02044 . _:721799 up:source unirule:MF_02044 . _:721800 up:source unirule:MF_02044 . _:721801 up:source unirule:MF_02044 . _:721802 up:source unirule:MF_02044 . _:721803 up:source unirule:MF_02044 . _:721804 up:source unirule:MF_02044 . _:721805 up:source unirule:MF_02044 . _:721806 up:source unirule:MF_02044 . _:721807 up:source unirule:MF_02044 . _:721808 up:source unirule:MF_02044 . _:721809 up:source unirule:MF_02044 . _:721810 up:source unirule:MF_02044 . _:721811 up:source unirule:MF_02044 . _:721812 up:source unirule:MF_02044 . _:721813 up:source unirule:MF_02044 . _:721814 up:source unirule:MF_02044 . _:721815 up:source unirule:MF_02044 . _:721816 up:source unirule:MF_02044 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation4 , ?annotation5 ; up:classifiedWith GO:0000403 , GO:0004519 , GO:0006302 , GO:0008408 , GO:0030145 , GO:0045027 , keyword:227 , keyword:234 , keyword:255 , keyword:269 , keyword:378 , keyword:464 , keyword:479 , keyword:540 ; up:recommendedName ?name0 . ?name0 up:ecName '3.1.-.-' ; up:fullName 'DNA double-strand break repair protein Mre11' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'mre11' . ?annotation2 up:cofactor chebi:29035 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 2 manganese ions per subunit.' . ?annotation3 a up:Activity_Regulation_Annotation ; rdfs:comment 'Nuclease activity is regulated by Rad50.' . ?annotation4 a up:Subunit_Annotation ; rdfs:comment 'Homodimer. Forms a heterotetramer composed of two Mre11 subunits and two Rad50 subunits.' . ?annotation5 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the MRE11/RAD32 family.' . ?pfs8 up:annotation ?annotation9 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor' . ?pfsb10 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; up:ligand ?ligand18 ; rdf:type up:Binding_Site_Annotation . ?pfsb16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?ligand18 rdfs:subClassOf chebi:29035 . ?pfs21 up:annotation ?annotation22 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; up:ligand ?ligand25 ; rdf:type up:Binding_Site_Annotation . ?pfsb23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?ligand25 rdfs:subClassOf chebi:29035 . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; up:ligand ?ligand32 ; rdf:type up:Binding_Site_Annotation . ?pfsb30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand32 rdfs:subClassOf chebi:29035 . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; up:ligand ?ligand39 ; rdf:type up:Binding_Site_Annotation . ?pfsb37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?ligand39 rdfs:subClassOf chebi:29035 . ?pfs42 up:annotation ?annotation43 . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; up:ligand ?ligand46 ; rdf:type up:Binding_Site_Annotation . ?pfsb44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?ligand46 rdfs:subClassOf chebi:29035 . ?pfs49 up:annotation ?annotation50 . ?annotation50 faldo:begin ?pfsb51 ; faldo:end ?pfse52 ; up:ligand ?ligand53 ; rdf:type up:Binding_Site_Annotation . ?pfsb51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfse52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?ligand53 rdfs:subClassOf chebi:29035 . ?pfs56 up:annotation ?annotation57 . ?annotation57 faldo:begin ?pfsb58 ; faldo:end ?pfse59 ; up:ligand ?ligand60 ; rdf:type up:Binding_Site_Annotation . ?pfsb58 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?pfse59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?ligand60 rdfs:subClassOf chebi:29035 . ?pfs63 up:annotation ?annotation64 . ?annotation64 faldo:begin ?pfsb65 ; faldo:end ?pfse66 ; up:ligand ?ligand67 ; rdf:type up:Binding_Site_Annotation . ?pfsb65 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?pfse66 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?ligand67 rdfs:subClassOf chebi:29035 . ?pfs70 up:annotation ?annotation71 . ?annotation71 faldo:begin ?pfsb72 ; faldo:end ?pfse73 ; up:ligand ?ligand74 ; rdf:type up:Binding_Site_Annotation . ?pfsb72 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?pfse73 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?ligand74 rdfs:subClassOf chebi:29035 . _:721817 a rdf:Statement ; up:attribution _:721787 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:721818 a rdf:Statement ; up:attribution _:721788 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:721819 a rdf:Statement ; up:attribution _:721789 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:721820 a rdf:Statement ; up:attribution _:721790 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:721821 a rdf:Statement ; up:attribution _:721791 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:721822 a rdf:Statement ; up:attribution _:721792 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:721823 a rdf:Statement ; up:attribution _:721793 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:227 . _:721824 a rdf:Statement ; up:attribution _:721794 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:234 . _:721825 a rdf:Statement ; up:attribution _:721795 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:255 . _:721826 a rdf:Statement ; up:attribution _:721796 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:269 . _:721827 a rdf:Statement ; up:attribution _:721797 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:721828 a rdf:Statement ; up:attribution _:721798 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:464 . _:721829 a rdf:Statement ; up:attribution _:721799 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:721830 a rdf:Statement ; up:attribution _:721800 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:540 . _:721831 a rdf:Statement ; up:attribution _:721801 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008408 . _:721832 a rdf:Statement ; up:attribution _:721802 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004519 . _:721833 a rdf:Statement ; up:attribution _:721803 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0030145 . _:721834 a rdf:Statement ; up:attribution _:721804 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0045027 . _:721835 a rdf:Statement ; up:attribution _:721805 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000403 . _:721836 a rdf:Statement ; up:attribution _:721806 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006302 . _:721837 a rdf:Statement ; up:source unirule:MF_02044 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:721838 a rdf:Statement ; up:attribution _:721807 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:721839 a rdf:Statement ; up:source unirule:MF_02044 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:721840 a rdf:Statement ; up:attribution _:721808 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:721841 a rdf:Statement ; up:source unirule:MF_02044 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:721842 a rdf:Statement ; up:attribution _:721809 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:721843 a rdf:Statement ; up:source unirule:MF_02044 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:721844 a rdf:Statement ; up:attribution _:721810 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:721845 a rdf:Statement ; up:source unirule:MF_02044 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:721846 a rdf:Statement ; up:attribution _:721811 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:721847 a rdf:Statement ; up:source unirule:MF_02044 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:721848 a rdf:Statement ; up:attribution _:721812 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:721849 a rdf:Statement ; up:source unirule:MF_02044 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:721850 a rdf:Statement ; up:attribution _:721813 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:721851 a rdf:Statement ; up:source unirule:MF_02044 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:721852 a rdf:Statement ; up:attribution _:721814 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:721853 a rdf:Statement ; up:source unirule:MF_02044 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:721854 a rdf:Statement ; up:attribution _:721815 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:721855 a rdf:Statement ; up:source unirule:MF_02044 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:721856 a rdf:Statement ; up:attribution _:721816 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02044 #Rule MF_02044 Created by:? on:2015-08-03 Modified by:Edouard de Castro on:2022-11-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02044 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(URI(CONCAT(STR(?this), '#MF_02044a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_02044a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_02044a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_02044a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_02044a5')) AS ?annotation5) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionQ8U1N982 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8U1N984 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8U1N9MF_0204477 . ?templateMotifSequenceMatchRegionQ8U1N982 faldo:begin ?templateMotifSequenceMatchBeginQ8U1N983 . ?templateMotifSequenceMatchBeginQ8U1N983 faldo:position ?templateMotifSequenceMatchBeginPositionQ8U1N978 ; faldo:reference isoform:Q8U1N9-1 . ?templateMotifSequenceProfileAlignmentOperationQ8U1N984 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . ?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0204488 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8U1N9MF_0204479 . ?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0204487 . ?targetMotifMatchRegionMatchBeginMF_0204487 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0204480 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0204488 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8U1N9MF_0204477, 1, (STRLEN(?templateMotifCigarQ8U1N9MF_0204477) - STRLEN(REPLACE(?templateMotifCigarQ8U1N9MF_0204477, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionQ8U1N978) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_0204479, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_0204479) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_0204479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_0204479, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_0204479) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_0204479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) . BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0204480) - 1) AS ?thisPositionOn12) . BIND(?thisPositionOn12 AS ?thisPositionOn13) . BIND(?this AS ?pfs1t91) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_02044a9')) AS ?annotation9) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionQ8U1N997 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8U1N999 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8U1N9MF_0204492 . ?templateMotifSequenceMatchRegionQ8U1N997 faldo:begin ?templateMotifSequenceMatchBeginQ8U1N998 . ?templateMotifSequenceMatchBeginQ8U1N998 faldo:position ?templateMotifSequenceMatchBeginPositionQ8U1N993 ; faldo:reference isoform:Q8U1N9-1 . ?templateMotifSequenceProfileAlignmentOperationQ8U1N999 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . ?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02044103 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8U1N9MF_0204494 . ?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02044102 . ?targetMotifMatchRegionMatchBeginMF_02044102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0204495 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02044103 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8U1N9MF_0204492, 1, (STRLEN(?templateMotifCigarQ8U1N9MF_0204492) - STRLEN(REPLACE(?templateMotifCigarQ8U1N9MF_0204492, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionQ8U1N993) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_0204494, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_0204494) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_0204494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_0204494, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_0204494) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_0204494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) . BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0204495) - 1) AS ?thisPositionOn19) . BIND(?thisPositionOn19 AS ?thisPositionOn20) . BIND(?this AS ?pfs1t106) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_02044a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionQ8U1N9112 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8U1N9114 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8U1N9MF_02044107 . ?templateMotifSequenceMatchRegionQ8U1N9112 faldo:begin ?templateMotifSequenceMatchBeginQ8U1N9113 . ?templateMotifSequenceMatchBeginQ8U1N9113 faldo:position ?templateMotifSequenceMatchBeginPositionQ8U1N9108 ; faldo:reference isoform:Q8U1N9-1 . ?templateMotifSequenceProfileAlignmentOperationQ8U1N9114 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . ?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02044118 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8U1N9MF_02044109 . ?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02044117 . ?targetMotifMatchRegionMatchBeginMF_02044117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02044110 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02044118 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8U1N9MF_02044107, 1, (STRLEN(?templateMotifCigarQ8U1N9MF_02044107) - STRLEN(REPLACE(?templateMotifCigarQ8U1N9MF_02044107, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionQ8U1N9108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_02044109, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_02044109) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_02044109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_02044109, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_02044109) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_02044109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) . BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_02044110) - 1) AS ?thisPositionOn26) . BIND(?thisPositionOn26 AS ?thisPositionOn27) . BIND(?this AS ?pfs1t121) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_02044a22')) AS ?annotation22) . BIND(?this AS ?pfs21) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionQ8U1N9127 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8U1N9129 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8U1N9MF_02044122 . ?templateMotifSequenceMatchRegionQ8U1N9127 faldo:begin ?templateMotifSequenceMatchBeginQ8U1N9128 . ?templateMotifSequenceMatchBeginQ8U1N9128 faldo:position ?templateMotifSequenceMatchBeginPositionQ8U1N9123 ; faldo:reference isoform:Q8U1N9-1 . ?templateMotifSequenceProfileAlignmentOperationQ8U1N9129 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . ?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02044133 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8U1N9MF_02044124 . ?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02044132 . ?targetMotifMatchRegionMatchBeginMF_02044132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02044125 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02044133 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8U1N9MF_02044122, 1, (STRLEN(?templateMotifCigarQ8U1N9MF_02044122) - STRLEN(REPLACE(?templateMotifCigarQ8U1N9MF_02044122, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionQ8U1N9123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_02044124, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_02044124) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_02044124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_02044124, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_02044124) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_02044124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) . BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_02044125) - 1) AS ?thisPositionOn33) . BIND(?thisPositionOn33 AS ?thisPositionOn34) . BIND(?this AS ?pfs1t136) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_02044a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionQ8U1N9142 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8U1N9144 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8U1N9MF_02044137 . ?templateMotifSequenceMatchRegionQ8U1N9142 faldo:begin ?templateMotifSequenceMatchBeginQ8U1N9143 . ?templateMotifSequenceMatchBeginQ8U1N9143 faldo:position ?templateMotifSequenceMatchBeginPositionQ8U1N9138 ; faldo:reference isoform:Q8U1N9-1 . ?templateMotifSequenceProfileAlignmentOperationQ8U1N9144 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . ?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02044148 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8U1N9MF_02044139 . ?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02044147 . ?targetMotifMatchRegionMatchBeginMF_02044147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02044140 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02044148 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8U1N9MF_02044137, 1, (STRLEN(?templateMotifCigarQ8U1N9MF_02044137) - STRLEN(REPLACE(?templateMotifCigarQ8U1N9MF_02044137, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionQ8U1N9138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_02044139, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_02044139) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_02044139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_02044139, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_02044139) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_02044139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) . BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_02044140) - 1) AS ?thisPositionOn40) . BIND(?thisPositionOn40 AS ?thisPositionOn41) . BIND(?this AS ?pfs1t151) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_02044a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionQ8U1N9157 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8U1N9159 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8U1N9MF_02044152 . ?templateMotifSequenceMatchRegionQ8U1N9157 faldo:begin ?templateMotifSequenceMatchBeginQ8U1N9158 . ?templateMotifSequenceMatchBeginQ8U1N9158 faldo:position ?templateMotifSequenceMatchBeginPositionQ8U1N9153 ; faldo:reference isoform:Q8U1N9-1 . ?templateMotifSequenceProfileAlignmentOperationQ8U1N9159 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . ?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02044163 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8U1N9MF_02044154 . ?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02044162 . ?targetMotifMatchRegionMatchBeginMF_02044162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02044155 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02044163 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8U1N9MF_02044152, 1, (STRLEN(?templateMotifCigarQ8U1N9MF_02044152) - STRLEN(REPLACE(?templateMotifCigarQ8U1N9MF_02044152, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionQ8U1N9153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_02044154, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_02044154) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_02044154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_02044154, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_02044154) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_02044154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) . BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_02044155) - 1) AS ?thisPositionOn47) . BIND(?thisPositionOn47 AS ?thisPositionOn48) . BIND(?this AS ?pfs1t166) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) . FILTER (REGEX('[NDE]', SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02044a43')) AS ?annotation43) . BIND(?this AS ?pfs42) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionQ8U1N9172 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8U1N9174 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8U1N9MF_02044167 . ?templateMotifSequenceMatchRegionQ8U1N9172 faldo:begin ?templateMotifSequenceMatchBeginQ8U1N9173 . ?templateMotifSequenceMatchBeginQ8U1N9173 faldo:position ?templateMotifSequenceMatchBeginPositionQ8U1N9168 ; faldo:reference isoform:Q8U1N9-1 . ?templateMotifSequenceProfileAlignmentOperationQ8U1N9174 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . ?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02044178 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8U1N9MF_02044169 . ?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02044177 . ?targetMotifMatchRegionMatchBeginMF_02044177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02044170 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02044178 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8U1N9MF_02044167, 1, (STRLEN(?templateMotifCigarQ8U1N9MF_02044167) - STRLEN(REPLACE(?templateMotifCigarQ8U1N9MF_02044167, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionQ8U1N9168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_02044169, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_02044169) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_02044169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_02044169, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_02044169) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_02044169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) . BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_02044170) - 1) AS ?thisPositionOn54) . BIND(?thisPositionOn54 AS ?thisPositionOn55) . BIND(?this AS ?pfs1t181) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_02044a50')) AS ?annotation50) . BIND(?this AS ?pfs49) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionQ8U1N9187 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8U1N9189 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8U1N9MF_02044182 . ?templateMotifSequenceMatchRegionQ8U1N9187 faldo:begin ?templateMotifSequenceMatchBeginQ8U1N9188 . ?templateMotifSequenceMatchBeginQ8U1N9188 faldo:position ?templateMotifSequenceMatchBeginPositionQ8U1N9183 ; faldo:reference isoform:Q8U1N9-1 . ?templateMotifSequenceProfileAlignmentOperationQ8U1N9189 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . ?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02044193 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8U1N9MF_02044184 . ?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02044192 . ?targetMotifMatchRegionMatchBeginMF_02044192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02044185 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02044193 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8U1N9MF_02044182, 1, (STRLEN(?templateMotifCigarQ8U1N9MF_02044182) - STRLEN(REPLACE(?templateMotifCigarQ8U1N9MF_02044182, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionQ8U1N9183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_02044184, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_02044184) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_02044184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_02044184, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_02044184) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_02044184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) . BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_02044185) - 1) AS ?thisPositionOn61) . BIND(?thisPositionOn61 AS ?thisPositionOn62) . BIND(?this AS ?pfs1t196) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_02044a57')) AS ?annotation57) . BIND(?this AS ?pfs56) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch201 faldo:location ?templateMotifSequenceMatchRegionQ8U1N9202 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8U1N9204 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8U1N9MF_02044197 . ?templateMotifSequenceMatchRegionQ8U1N9202 faldo:begin ?templateMotifSequenceMatchBeginQ8U1N9203 . ?templateMotifSequenceMatchBeginQ8U1N9203 faldo:position ?templateMotifSequenceMatchBeginPositionQ8U1N9198 ; faldo:reference isoform:Q8U1N9-1 . ?templateMotifSequenceProfileAlignmentOperationQ8U1N9204 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . ?targetMotifMatch205 faldo:location ?targetMotifMatchRegionMatch206 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02044208 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8U1N9MF_02044199 . ?targetMotifMatchRegionMatch206 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02044207 . ?targetMotifMatchRegionMatchBeginMF_02044207 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02044200 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02044208 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8U1N9MF_02044197, 1, (STRLEN(?templateMotifCigarQ8U1N9MF_02044197) - STRLEN(REPLACE(?templateMotifCigarQ8U1N9MF_02044197, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionQ8U1N9198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_02044199, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_02044199) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_02044199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_02044199, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_02044199) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_02044199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) . BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_02044200) - 1) AS ?thisPositionOn68) . BIND(?thisPositionOn68 AS ?thisPositionOn69) . BIND(?this AS ?pfs1t211) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_02044a64')) AS ?annotation64) . BIND(?this AS ?pfs63) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch216 faldo:location ?templateMotifSequenceMatchRegionQ8U1N9217 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8U1N9219 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8U1N9MF_02044212 . ?templateMotifSequenceMatchRegionQ8U1N9217 faldo:begin ?templateMotifSequenceMatchBeginQ8U1N9218 . ?templateMotifSequenceMatchBeginQ8U1N9218 faldo:position ?templateMotifSequenceMatchBeginPositionQ8U1N9213 ; faldo:reference isoform:Q8U1N9-1 . ?templateMotifSequenceProfileAlignmentOperationQ8U1N9219 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . ?targetMotifMatch220 faldo:location ?targetMotifMatchRegionMatch221 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02044223 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8U1N9MF_02044214 . ?targetMotifMatchRegionMatch221 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02044222 . ?targetMotifMatchRegionMatchBeginMF_02044222 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02044215 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02044223 edam:has_input signature:MF_02044 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8U1N9MF_02044212, 1, (STRLEN(?templateMotifCigarQ8U1N9MF_02044212) - STRLEN(REPLACE(?templateMotifCigarQ8U1N9MF_02044212, CONCAT('^(?:-*[^-]){', STR(((208 - ?templateMotifSequenceMatchBeginPositionQ8U1N9213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_02044214, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_02044214) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_02044214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8U1N9MF_02044214, 1, (STRLEN(?targetMotifMatchCigarQ8U1N9MF_02044214) - STRLEN(REPLACE(?targetMotifMatchCigarQ8U1N9MF_02044214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) . BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_02044215) - 1) AS ?thisPositionOn75) . BIND(?thisPositionOn75 AS ?thisPositionOn76) . BIND(?this AS ?pfs1t226) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_02044a71')) AS ?annotation71) . BIND(?this AS ?pfs70) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:183963 . BIND(?this AS ?case6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:183963 . })) . BIND(?this AS ?case7) . } }