CONSTRUCT { _:747773 up:source unirule:MF_02128 . _:747774 up:source unirule:MF_02128 . _:747775 up:source unirule:MF_02128 . _:747776 up:source unirule:MF_02128 . _:747777 up:source unirule:MF_02128 . _:747778 up:source unirule:MF_02128 . _:747779 up:source unirule:MF_02128 . _:747780 up:source unirule:MF_02128 . _:747781 up:source unirule:MF_02128 . _:747782 up:source unirule:MF_02128 . _:747783 up:source unirule:MF_02128 . _:747784 up:source unirule:MF_02128 . _:747785 up:source unirule:MF_02128 . _:747786 up:source unirule:MF_02128 . _:747787 up:source unirule:MF_02128 . _:747788 up:source unirule:MF_02128 . _:747789 up:source unirule:MF_02128 . _:747790 up:source unirule:MF_02128 . _:747791 up:source unirule:MF_02128 . _:747792 up:source unirule:MF_02128 . _:747793 up:source unirule:MF_02128 . _:747794 up:source unirule:MF_02128 . _:747795 up:source unirule:MF_02128 . _:747796 up:source unirule:MF_02128 . _:747797 up:source unirule:MF_02128 . _:747798 up:source unirule:MF_02128 . _:747799 up:source unirule:MF_02128 . _:747800 up:source unirule:MF_02128 . _:747801 up:source unirule:MF_02128 . _:747802 up:source unirule:MF_02128 . _:747803 up:source unirule:MF_02128 . _:747804 up:source unirule:MF_02128 . _:747805 up:source unirule:MF_02128 . _:747806 up:source unirule:MF_02128 . _:747807 up:source unirule:MF_02128 . _:747808 up:source unirule:MF_02128 . _:747809 up:source unirule:MF_02128 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation6 , ?annotation7 ; up:classifiedWith GO:0000287 , GO:0005524 , GO:0009030 , GO:0009229 , keyword:418 , keyword:460 , keyword:479 , keyword:547 , keyword:67 , keyword:784 , keyword:808 ; up:recommendedName ?name0 . ?name0 up:ecName '2.7.4.16' ; up:fullName 'Thiamine-monophosphate kinase' ; up:shortName 'TMP kinase' , 'Thiamine-phosphate kinase' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'thiL' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Catalyzes the ATP-dependent phosphorylation of thiamine-monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1.' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/15913>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.4.16>. ?annotation5 a up:Pathway_Annotation ; rdfs:comment 'Cofactor biosynthesis; thiamine diphosphate biosynthesis; thiamine diphosphate from thiamine phosphate: step 1/1.' . ?annotation6 a up:Annotation ; rdfs:comment 'Reaction mechanism of ThiL seems to utilize a direct, inline transfer of the gamma-phosphate of ATP to TMP rather than a phosphorylated enzyme intermediate.' . ?annotation7 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the thiamine-monophosphate kinase family.' . ?pfs8 up:annotation ?annotation9 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; up:ligand ?ligand12 ; rdf:type up:Binding_Site_Annotation . ?pfsb10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?ligand12 rdfs:subClassOf chebi:30616 . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; up:ligand ?ligand19 ; rdf:type up:Binding_Site_Annotation . ?pfsb17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?ligand19 rdfs:subClassOf chebi:18420 . ?pfs22 up:annotation ?annotation23 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; up:ligand ?ligand26 ; rdf:type up:Binding_Site_Annotation . ?pfsb24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?ligand26 rdfs:subClassOf chebi:18420 . ?pfs29 up:annotation ?annotation30 . ?annotation30 faldo:begin ?pfsb31 ; faldo:end ?pfse32 ; up:ligand ?ligand33 ; rdf:type up:Binding_Site_Annotation . ?pfsb31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?ligand33 rdfs:subClassOf chebi:18420 . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; up:ligand ?ligand40 ; rdf:type up:Binding_Site_Annotation . ?pfsb38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?ligand40 rdfs:subClassOf chebi:18420 . ?pfs43 up:annotation ?annotation44 . ?annotation44 faldo:begin ?pfsb45 ; faldo:end ?pfse46 ; up:ligand ?ligand47 ; rdf:type up:Binding_Site_Annotation . ?pfsb45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?ligand47 rdfs:subClassOf chebi:18420 . ?pfs50 up:annotation ?annotation51 . ?annotation51 faldo:begin ?pfsb52 ; faldo:end ?pfse53 ; up:ligand ?ligand54 ; rdf:type up:Binding_Site_Annotation . ?pfsb52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?pfse53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?ligand54 rdfs:subClassOf chebi:18420 . ?pfs57 up:annotation ?annotation58 . ?annotation58 faldo:begin ?pfsb59 ; faldo:end ?pfse60 ; up:ligand ?ligand61 ; rdf:type up:Binding_Site_Annotation . ?pfsb59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?pfse60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?ligand61 rdfs:subClassOf chebi:18420 . ?pfs64 up:annotation ?annotation65 . ?annotation65 faldo:begin ?pfsb66 ; faldo:end ?pfse67 ; up:ligand ?ligand68 ; rdf:type up:Binding_Site_Annotation . ?pfsb66 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?pfse67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?ligand68 rdfs:subClassOf chebi:18420 . ?pfs71 up:annotation ?annotation72 . ?annotation72 faldo:begin ?pfsb73 ; faldo:end ?pfse74 ; up:ligand ?ligand75 ; rdf:type up:Binding_Site_Annotation . ?pfsb73 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?pfse74 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?ligand75 rdfs:subClassOf chebi:18420 . ?pfs78 up:annotation ?annotation79 . ?annotation79 faldo:begin ?pfsb80 ; faldo:end ?pfse81 ; up:ligand ?ligand82 ; rdf:type up:Binding_Site_Annotation . ?pfsb80 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?pfse81 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?ligand82 rdfs:subClassOf chebi:18420 . ?pfs85 up:annotation ?annotation86 . ?annotation86 faldo:begin ?pfsb87 ; faldo:end ?pfse88 ; up:ligand ?ligand89 ; rdf:type up:Binding_Site_Annotation . ?pfsb87 faldo:position ?thisPositionOn90 ; rdf:type faldo:ExactPosition . ?pfse88 faldo:position ?thisPositionOn91 ; rdf:type faldo:ExactPosition . ?ligand89 rdfs:subClassOf chebi:18420 . ?pfs92 up:annotation ?annotation93 . ?annotation93 faldo:begin ?pfsb94 ; faldo:end ?pfse95 ; up:ligand ?ligand96 ; rdf:type up:Binding_Site_Annotation . ?pfsb94 faldo:position ?thisPositionOn97 ; rdf:type faldo:ExactPosition . ?pfse95 faldo:position ?thisPositionOn98 ; rdf:type faldo:ExactPosition . ?ligand96 rdfs:subClassOf chebi:18420 . ?pfs99 up:annotation ?annotation100 . ?annotation100 faldo:begin ?pfsb101 ; faldo:end ?pfse102 ; up:ligand ?ligand103 ; rdf:type up:Binding_Site_Annotation . ?pfsb101 faldo:position ?thisPositionOn105 ; rdf:type faldo:ExactPosition . ?pfse102 faldo:position ?thisPositionOn106 ; rdf:type faldo:ExactPosition . ?ligand103 rdfs:subClassOf ?molecule104 . ?molecule104 rdfs:label 'substrate' . ?pfs107 up:annotation ?annotation108 . ?annotation108 faldo:begin ?pfsb109 ; faldo:end ?pfse110 ; up:ligand ?ligand111 ; rdf:type up:Binding_Site_Annotation . ?pfsb109 faldo:position ?thisPositionOn112 ; rdf:type faldo:ExactPosition . ?pfse110 faldo:position ?thisPositionOn113 ; rdf:type faldo:ExactPosition . ?ligand111 rdfs:subClassOf chebi:30616 . ?pfs114 up:annotation ?annotation115 . ?annotation115 faldo:begin ?pfsb116 ; faldo:end ?pfse117 ; up:ligand ?ligand118 ; rdf:type up:Binding_Site_Annotation . ?pfsb116 faldo:position ?thisPositionOn119 ; rdf:type faldo:ExactPosition . ?pfse117 faldo:position ?thisPositionOn120 ; rdf:type faldo:ExactPosition . ?ligand118 rdfs:subClassOf chebi:30616 . ?pfs121 up:annotation ?annotation122 . ?annotation122 faldo:begin ?pfsb123 ; faldo:end ?pfse124 ; up:ligand ?ligand125 ; rdf:type up:Binding_Site_Annotation . ?pfsb123 faldo:position ?thisPositionOn126 ; rdf:type faldo:ExactPosition . ?pfse124 faldo:position ?thisPositionOn127 ; rdf:type faldo:ExactPosition . ?ligand125 rdfs:subClassOf chebi:30616 . ?pfs128 up:annotation ?annotation129 . ?annotation129 faldo:begin ?pfsb130 ; faldo:end ?pfse131 ; up:ligand ?ligand132 ; rdf:type up:Binding_Site_Annotation . ?pfsb130 faldo:position ?thisPositionOn134 ; rdf:type faldo:ExactPosition . ?pfse131 faldo:position ?thisPositionOn135 ; rdf:type faldo:ExactPosition . ?ligand132 rdfs:subClassOf ?molecule133 . ?molecule133 rdfs:label 'substrate' . ?pfs136 up:annotation ?annotation137 . ?annotation137 faldo:begin ?pfsb138 ; faldo:end ?pfse139 ; up:ligand ?ligand140 ; rdf:type up:Binding_Site_Annotation . ?pfsb138 faldo:position ?thisPositionOn142 ; rdf:type faldo:ExactPosition . ?pfse139 faldo:position ?thisPositionOn143 ; rdf:type faldo:ExactPosition . ?ligand140 rdfs:subClassOf ?molecule141 . ?molecule141 rdfs:label 'substrate' . _:747810 a rdf:Statement ; up:attribution _:747773 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:747811 a rdf:Statement ; up:attribution _:747774 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:747812 a rdf:Statement ; up:attribution _:747775 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:747813 a rdf:Statement ; up:attribution _:747776 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:747814 a rdf:Statement ; up:attribution _:747777 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:747815 a rdf:Statement ; up:attribution _:747778 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:747816 a rdf:Statement ; up:attribution _:747779 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:747817 a rdf:Statement ; up:attribution _:747780 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:747818 a rdf:Statement ; up:attribution _:747781 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:418 . _:747819 a rdf:Statement ; up:attribution _:747782 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:747820 a rdf:Statement ; up:attribution _:747783 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:747821 a rdf:Statement ; up:attribution _:747784 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:747822 a rdf:Statement ; up:attribution _:747785 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:784 . _:747823 a rdf:Statement ; up:attribution _:747786 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:747824 a rdf:Statement ; up:attribution _:747787 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:747825 a rdf:Statement ; up:attribution _:747788 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:747826 a rdf:Statement ; up:attribution _:747789 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009030 . _:747827 a rdf:Statement ; up:attribution _:747790 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009229 . _:747828 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:747829 a rdf:Statement ; up:attribution _:747791 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:747830 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:747831 a rdf:Statement ; up:attribution _:747792 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:747832 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:747833 a rdf:Statement ; up:attribution _:747793 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:747834 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:747835 a rdf:Statement ; up:attribution _:747794 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:747836 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:747837 a rdf:Statement ; up:attribution _:747795 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:747838 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:747839 a rdf:Statement ; up:attribution _:747796 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:747840 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:747841 a rdf:Statement ; up:attribution _:747797 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:747842 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:747843 a rdf:Statement ; up:attribution _:747798 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:747844 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:747845 a rdf:Statement ; up:attribution _:747799 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:747846 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:747847 a rdf:Statement ; up:attribution _:747800 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:747848 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:747849 a rdf:Statement ; up:attribution _:747801 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:747850 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs85 ; rdf:predicate up:annotation ; rdf:object ?annotation86 . _:747851 a rdf:Statement ; up:attribution _:747802 ; rdf:subject ?pfs85 ; rdf:predicate up:annotation ; rdf:object ?annotation86 . _:747852 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs92 ; rdf:predicate up:annotation ; rdf:object ?annotation93 . _:747853 a rdf:Statement ; up:attribution _:747803 ; rdf:subject ?pfs92 ; rdf:predicate up:annotation ; rdf:object ?annotation93 . _:747854 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs99 ; rdf:predicate up:annotation ; rdf:object ?annotation100 . _:747855 a rdf:Statement ; up:attribution _:747804 ; rdf:subject ?pfs99 ; rdf:predicate up:annotation ; rdf:object ?annotation100 . _:747856 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs107 ; rdf:predicate up:annotation ; rdf:object ?annotation108 . _:747857 a rdf:Statement ; up:attribution _:747805 ; rdf:subject ?pfs107 ; rdf:predicate up:annotation ; rdf:object ?annotation108 . _:747858 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs114 ; rdf:predicate up:annotation ; rdf:object ?annotation115 . _:747859 a rdf:Statement ; up:attribution _:747806 ; rdf:subject ?pfs114 ; rdf:predicate up:annotation ; rdf:object ?annotation115 . _:747860 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs121 ; rdf:predicate up:annotation ; rdf:object ?annotation122 . _:747861 a rdf:Statement ; up:attribution _:747807 ; rdf:subject ?pfs121 ; rdf:predicate up:annotation ; rdf:object ?annotation122 . _:747862 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs128 ; rdf:predicate up:annotation ; rdf:object ?annotation129 . _:747863 a rdf:Statement ; up:attribution _:747808 ; rdf:subject ?pfs128 ; rdf:predicate up:annotation ; rdf:object ?annotation129 . _:747864 a rdf:Statement ; up:source unirule:MF_02128 ; rdf:subject ?pfs136 ; rdf:predicate up:annotation ; rdf:object ?annotation137 . _:747865 a rdf:Statement ; up:attribution _:747809 ; rdf:subject ?pfs136 ; rdf:predicate up:annotation ; rdf:object ?annotation137 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02128 #Rule MF_02128 Created by:ecoudert on:2012-01-03 Modified by:ecastro on:2023-06-01 VALUES ?supertaxon144 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02128 . ?thisOrganism rdfs:subClassOf+ ?supertaxon144 . BIND(URI(CONCAT(STR(?this), '#MF_02128a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_02128a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_02128a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_02128a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_02128a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_02128a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionO67883150 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883152 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128145 . ?templateMotifSequenceMatchRegionO67883150 faldo:begin ?templateMotifSequenceMatchBeginO67883151 . ?templateMotifSequenceMatchBeginO67883151 faldo:position ?templateMotifSequenceMatchBeginPositionO67883146 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883152 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128156 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128147 . ?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128155 . ?targetMotifMatchRegionMatchBeginMF_02128155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128148 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128156 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128145, 1, (STRLEN(?templateMotifCigarO67883MF_02128145) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128145, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionO67883146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128147, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128147) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128147, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128147) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) . BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_02128148) - 1) AS ?thisPositionOn13) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128145, 1, (STRLEN(?templateMotifCigarO67883MF_02128145) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128145, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionO67883146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128147, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128147) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128147, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128147) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) . BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_02128148) - 1) AS ?thisPositionOn14) . BIND(?this AS ?pfs1t161) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) . FILTER (REGEX('G[ND]', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) . BIND(URI(CONCAT(STR(?this), '#MF_02128a9')) AS ?annotation9) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch166 faldo:location ?templateMotifSequenceMatchRegionO67883167 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883169 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128162 . ?templateMotifSequenceMatchRegionO67883167 faldo:begin ?templateMotifSequenceMatchBeginO67883168 . ?templateMotifSequenceMatchBeginO67883168 faldo:position ?templateMotifSequenceMatchBeginPositionO67883163 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883169 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch170 faldo:location ?targetMotifMatchRegionMatch171 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128173 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128164 . ?targetMotifMatchRegionMatch171 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128172 . ?targetMotifMatchRegionMatchBeginMF_02128172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128165 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128173 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128162, 1, (STRLEN(?templateMotifCigarO67883MF_02128162) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128162, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionO67883163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128164, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128164) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128164, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128164) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) . BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_02128165) - 1) AS ?thisPositionOn20) . BIND(?thisPositionOn20 AS ?thisPositionOn21) . BIND(?this AS ?pfs1t176) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) . FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02128a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch181 faldo:location ?templateMotifSequenceMatchRegionO67883182 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883184 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128177 . ?templateMotifSequenceMatchRegionO67883182 faldo:begin ?templateMotifSequenceMatchBeginO67883183 . ?templateMotifSequenceMatchBeginO67883183 faldo:position ?templateMotifSequenceMatchBeginPositionO67883178 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883184 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch185 faldo:location ?targetMotifMatchRegionMatch186 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128188 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128179 . ?targetMotifMatchRegionMatch186 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128187 . ?targetMotifMatchRegionMatchBeginMF_02128187 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128180 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128188 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128177, 1, (STRLEN(?templateMotifCigarO67883MF_02128177) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128177, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionO67883178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128179, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128179) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128179, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128179) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) . BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_02128180) - 1) AS ?thisPositionOn27) . BIND(?thisPositionOn27 AS ?thisPositionOn28) . BIND(?this AS ?pfs1t191) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) . FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02128a23')) AS ?annotation23) . BIND(?this AS ?pfs22) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionO67883197 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883199 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128192 . ?templateMotifSequenceMatchRegionO67883197 faldo:begin ?templateMotifSequenceMatchBeginO67883198 . ?templateMotifSequenceMatchBeginO67883198 faldo:position ?templateMotifSequenceMatchBeginPositionO67883193 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883199 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128203 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128194 . ?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128202 . ?targetMotifMatchRegionMatchBeginMF_02128202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128195 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128203 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128192, 1, (STRLEN(?templateMotifCigarO67883MF_02128192) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128192, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionO67883193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128194, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128194) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128194, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128194) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) . BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_02128195) - 1) AS ?thisPositionOn34) . BIND(?thisPositionOn34 AS ?thisPositionOn35) . BIND(?this AS ?pfs1t206) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) . FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02128a30')) AS ?annotation30) . BIND(?this AS ?pfs29) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch211 faldo:location ?templateMotifSequenceMatchRegionO67883212 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883214 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128207 . ?templateMotifSequenceMatchRegionO67883212 faldo:begin ?templateMotifSequenceMatchBeginO67883213 . ?templateMotifSequenceMatchBeginO67883213 faldo:position ?templateMotifSequenceMatchBeginPositionO67883208 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883214 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch215 faldo:location ?targetMotifMatchRegionMatch216 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128218 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128209 . ?targetMotifMatchRegionMatch216 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128217 . ?targetMotifMatchRegionMatchBeginMF_02128217 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128210 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128218 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128207, 1, (STRLEN(?templateMotifCigarO67883MF_02128207) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128207, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionO67883208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128209, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128209) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128209, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128209) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) . BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_02128210) - 1) AS ?thisPositionOn41) . BIND(?thisPositionOn41 AS ?thisPositionOn42) . BIND(?this AS ?pfs1t221) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) . FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02128a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionO67883227 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883229 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128222 . ?templateMotifSequenceMatchRegionO67883227 faldo:begin ?templateMotifSequenceMatchBeginO67883228 . ?templateMotifSequenceMatchBeginO67883228 faldo:position ?templateMotifSequenceMatchBeginPositionO67883223 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883229 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128233 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128224 . ?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128232 . ?targetMotifMatchRegionMatchBeginMF_02128232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128225 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128233 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128222, 1, (STRLEN(?templateMotifCigarO67883MF_02128222) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128222, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionO67883223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128224, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128224) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128224, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128224) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) . BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_02128225) - 1) AS ?thisPositionOn48) . BIND(?thisPositionOn48 AS ?thisPositionOn49) . BIND(?this AS ?pfs1t236) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_02128a44')) AS ?annotation44) . BIND(?this AS ?pfs43) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionO67883242 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883244 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128237 . ?templateMotifSequenceMatchRegionO67883242 faldo:begin ?templateMotifSequenceMatchBeginO67883243 . ?templateMotifSequenceMatchBeginO67883243 faldo:position ?templateMotifSequenceMatchBeginPositionO67883238 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883244 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128248 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128239 . ?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128247 . ?targetMotifMatchRegionMatchBeginMF_02128247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128240 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128248 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128237, 1, (STRLEN(?templateMotifCigarO67883MF_02128237) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128237, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionO67883238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128239, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128239) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128239, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128239) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) . BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_02128240) - 1) AS ?thisPositionOn55) . BIND(?thisPositionOn55 AS ?thisPositionOn56) . BIND(?this AS ?pfs1t251) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_02128a51')) AS ?annotation51) . BIND(?this AS ?pfs50) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionO67883257 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883259 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128252 . ?templateMotifSequenceMatchRegionO67883257 faldo:begin ?templateMotifSequenceMatchBeginO67883258 . ?templateMotifSequenceMatchBeginO67883258 faldo:position ?templateMotifSequenceMatchBeginPositionO67883253 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883259 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128263 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128254 . ?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128262 . ?targetMotifMatchRegionMatchBeginMF_02128262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128255 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128263 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128252, 1, (STRLEN(?templateMotifCigarO67883MF_02128252) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128252, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionO67883253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128254, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128254) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128254, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128254) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) . BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_02128255) - 1) AS ?thisPositionOn62) . BIND(?thisPositionOn62 AS ?thisPositionOn63) . BIND(?this AS ?pfs1t266) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_02128a58')) AS ?annotation58) . BIND(?this AS ?pfs57) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch271 faldo:location ?templateMotifSequenceMatchRegionO67883272 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883274 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128267 . ?templateMotifSequenceMatchRegionO67883272 faldo:begin ?templateMotifSequenceMatchBeginO67883273 . ?templateMotifSequenceMatchBeginO67883273 faldo:position ?templateMotifSequenceMatchBeginPositionO67883268 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883274 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch275 faldo:location ?targetMotifMatchRegionMatch276 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128278 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128269 . ?targetMotifMatchRegionMatch276 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128277 . ?targetMotifMatchRegionMatchBeginMF_02128277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128270 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128278 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128267, 1, (STRLEN(?templateMotifCigarO67883MF_02128267) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128267, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionO67883268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128269, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128269) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128269, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128269) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) . BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_02128270) - 1) AS ?thisPositionOn69) . BIND(?thisPositionOn69 AS ?thisPositionOn70) . BIND(?this AS ?pfs1t281) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_02128a65')) AS ?annotation65) . BIND(?this AS ?pfs64) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch286 faldo:location ?templateMotifSequenceMatchRegionO67883287 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883289 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128282 . ?templateMotifSequenceMatchRegionO67883287 faldo:begin ?templateMotifSequenceMatchBeginO67883288 . ?templateMotifSequenceMatchBeginO67883288 faldo:position ?templateMotifSequenceMatchBeginPositionO67883283 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883289 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch290 faldo:location ?targetMotifMatchRegionMatch291 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128293 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128284 . ?targetMotifMatchRegionMatch291 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128292 . ?targetMotifMatchRegionMatchBeginMF_02128292 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128285 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128293 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128282, 1, (STRLEN(?templateMotifCigarO67883MF_02128282) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128282, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionO67883283) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1294) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128284, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128284) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128284, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128284) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), '')))), '[^-]', ''))) AS ?step2295) . BIND(((?step2295 + ?targetMotifMatchRegionMatchBeginPositionMF_02128285) - 1) AS ?thisPositionOn76) . BIND(?thisPositionOn76 AS ?thisPositionOn77) . BIND(?this AS ?pfs1t296) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_02128a72')) AS ?annotation72) . BIND(?this AS ?pfs71) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch301 faldo:location ?templateMotifSequenceMatchRegionO67883302 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883304 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128297 . ?templateMotifSequenceMatchRegionO67883302 faldo:begin ?templateMotifSequenceMatchBeginO67883303 . ?templateMotifSequenceMatchBeginO67883303 faldo:position ?templateMotifSequenceMatchBeginPositionO67883298 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883304 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch305 faldo:location ?targetMotifMatchRegionMatch306 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128308 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128299 . ?targetMotifMatchRegionMatch306 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128307 . ?targetMotifMatchRegionMatchBeginMF_02128307 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128300 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128308 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128297, 1, (STRLEN(?templateMotifCigarO67883MF_02128297) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128297, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionO67883298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1309) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128299, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128299) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128299, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128299) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), '')))), '[^-]', ''))) AS ?step2310) . BIND(((?step2310 + ?targetMotifMatchRegionMatchBeginPositionMF_02128300) - 1) AS ?thisPositionOn83) . BIND(?thisPositionOn83 AS ?thisPositionOn84) . BIND(?this AS ?pfs1t311) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb80) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse81) . FILTER (REGEX('[ND]', SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02128a79')) AS ?annotation79) . BIND(?this AS ?pfs78) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch316 faldo:location ?templateMotifSequenceMatchRegionO67883317 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883319 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128312 . ?templateMotifSequenceMatchRegionO67883317 faldo:begin ?templateMotifSequenceMatchBeginO67883318 . ?templateMotifSequenceMatchBeginO67883318 faldo:position ?templateMotifSequenceMatchBeginPositionO67883313 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883319 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch320 faldo:location ?targetMotifMatchRegionMatch321 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128323 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128314 . ?targetMotifMatchRegionMatch321 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128322 . ?targetMotifMatchRegionMatchBeginMF_02128322 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128315 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128323 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128312, 1, (STRLEN(?templateMotifCigarO67883MF_02128312) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128312, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionO67883313) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1324) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128314, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128314) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128314, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128314) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), '')))), '[^-]', ''))) AS ?step2325) . BIND(((?step2325 + ?targetMotifMatchRegionMatchBeginPositionMF_02128315) - 1) AS ?thisPositionOn90) . BIND(?thisPositionOn90 AS ?thisPositionOn91) . BIND(?this AS ?pfs1t326) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb87) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse88) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn90, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_02128a86')) AS ?annotation86) . BIND(?this AS ?pfs85) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch331 faldo:location ?templateMotifSequenceMatchRegionO67883332 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883334 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128327 . ?templateMotifSequenceMatchRegionO67883332 faldo:begin ?templateMotifSequenceMatchBeginO67883333 . ?templateMotifSequenceMatchBeginO67883333 faldo:position ?templateMotifSequenceMatchBeginPositionO67883328 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883334 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch335 faldo:location ?targetMotifMatchRegionMatch336 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128338 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128329 . ?targetMotifMatchRegionMatch336 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128337 . ?targetMotifMatchRegionMatchBeginMF_02128337 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128330 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128338 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128327, 1, (STRLEN(?templateMotifCigarO67883MF_02128327) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128327, CONCAT('^(?:-*[^-]){', STR(((210 - ?templateMotifSequenceMatchBeginPositionO67883328) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1339) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128329, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128329) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128329, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128329) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), '')))), '[^-]', ''))) AS ?step2340) . BIND(((?step2340 + ?targetMotifMatchRegionMatchBeginPositionMF_02128330) - 1) AS ?thisPositionOn97) . BIND(?thisPositionOn97 AS ?thisPositionOn98) . BIND(?this AS ?pfs1t341) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb94) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse95) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn97, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_02128a93')) AS ?annotation93) . BIND(?this AS ?pfs92) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch346 faldo:location ?templateMotifSequenceMatchRegionO67883347 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883349 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128342 . ?templateMotifSequenceMatchRegionO67883347 faldo:begin ?templateMotifSequenceMatchBeginO67883348 . ?templateMotifSequenceMatchBeginO67883348 faldo:position ?templateMotifSequenceMatchBeginPositionO67883343 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883349 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch350 faldo:location ?targetMotifMatchRegionMatch351 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128353 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128344 . ?targetMotifMatchRegionMatch351 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128352 . ?targetMotifMatchRegionMatchBeginMF_02128352 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128345 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128353 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128342, 1, (STRLEN(?templateMotifCigarO67883MF_02128342) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128342, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionO67883343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1354) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128344, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128344) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128344, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128344) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), '')))), '[^-]', ''))) AS ?step2355) . BIND(((?step2355 + ?targetMotifMatchRegionMatchBeginPositionMF_02128345) - 1) AS ?thisPositionOn105) . BIND(?thisPositionOn105 AS ?thisPositionOn106) . BIND(?this AS ?pfs1t356) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb101) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse102) . FILTER (REGEX('[HD]', SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02128a100')) AS ?annotation100) . BIND(?this AS ?pfs99) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch361 faldo:location ?templateMotifSequenceMatchRegionO67883362 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883364 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128357 . ?templateMotifSequenceMatchRegionO67883362 faldo:begin ?templateMotifSequenceMatchBeginO67883363 . ?templateMotifSequenceMatchBeginO67883363 faldo:position ?templateMotifSequenceMatchBeginPositionO67883358 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883364 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch365 faldo:location ?targetMotifMatchRegionMatch366 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128368 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128359 . ?targetMotifMatchRegionMatch366 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128367 . ?targetMotifMatchRegionMatchBeginMF_02128367 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128360 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128368 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128357, 1, (STRLEN(?templateMotifCigarO67883MF_02128357) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128357, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionO67883358) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1369) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128359, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128359) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128359, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128359) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), '')))), '[^-]', ''))) AS ?step2370) . BIND(((?step2370 + ?targetMotifMatchRegionMatchBeginPositionMF_02128360) - 1) AS ?thisPositionOn112) . BIND(?thisPositionOn112 AS ?thisPositionOn113) . BIND(?this AS ?pfs1t371) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb109) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse110) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn112, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_02128a108')) AS ?annotation108) . BIND(?this AS ?pfs107) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch376 faldo:location ?templateMotifSequenceMatchRegionO67883377 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883379 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128372 . ?templateMotifSequenceMatchRegionO67883377 faldo:begin ?templateMotifSequenceMatchBeginO67883378 . ?templateMotifSequenceMatchBeginO67883378 faldo:position ?templateMotifSequenceMatchBeginPositionO67883373 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883379 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch380 faldo:location ?targetMotifMatchRegionMatch381 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128383 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128374 . ?targetMotifMatchRegionMatch381 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128382 . ?targetMotifMatchRegionMatchBeginMF_02128382 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128375 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128383 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128372, 1, (STRLEN(?templateMotifCigarO67883MF_02128372) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128372, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionO67883373) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1384) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128374, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128374) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1384), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128374, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128374) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1384), '}'), '')))), '[^-]', ''))) AS ?step2385) . BIND(((?step2385 + ?targetMotifMatchRegionMatchBeginPositionMF_02128375) - 1) AS ?thisPositionOn119) . BIND(?thisPositionOn119 AS ?thisPositionOn120) . BIND(?this AS ?pfs1t386) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfsb116) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfse117) . FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn119, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02128a115')) AS ?annotation115) . BIND(?this AS ?pfs114) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch391 faldo:location ?templateMotifSequenceMatchRegionO67883392 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883394 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128387 . ?templateMotifSequenceMatchRegionO67883392 faldo:begin ?templateMotifSequenceMatchBeginO67883393 . ?templateMotifSequenceMatchBeginO67883393 faldo:position ?templateMotifSequenceMatchBeginPositionO67883388 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883394 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch395 faldo:location ?targetMotifMatchRegionMatch396 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128398 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128389 . ?targetMotifMatchRegionMatch396 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128397 . ?targetMotifMatchRegionMatchBeginMF_02128397 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128390 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128398 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128387, 1, (STRLEN(?templateMotifCigarO67883MF_02128387) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128387, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionO67883388) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1399) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128389, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128389) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1399), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128389, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128389) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1399), '}'), '')))), '[^-]', ''))) AS ?step2400) . BIND(((?step2400 + ?targetMotifMatchRegionMatchBeginPositionMF_02128390) - 1) AS ?thisPositionOn126) . BIND(?thisPositionOn126 AS ?thisPositionOn127) . BIND(?this AS ?pfs1t401) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfsb123) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfse124) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn126, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02128a122')) AS ?annotation122) . BIND(?this AS ?pfs121) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch406 faldo:location ?templateMotifSequenceMatchRegionO67883407 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883409 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128402 . ?templateMotifSequenceMatchRegionO67883407 faldo:begin ?templateMotifSequenceMatchBeginO67883408 . ?templateMotifSequenceMatchBeginO67883408 faldo:position ?templateMotifSequenceMatchBeginPositionO67883403 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883409 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch410 faldo:location ?targetMotifMatchRegionMatch411 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128413 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128404 . ?targetMotifMatchRegionMatch411 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128412 . ?targetMotifMatchRegionMatchBeginMF_02128412 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128405 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128413 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128402, 1, (STRLEN(?templateMotifCigarO67883MF_02128402) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128402, CONCAT('^(?:-*[^-]){', STR(((260 - ?templateMotifSequenceMatchBeginPositionO67883403) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1414) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128404, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128404) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128404, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1414), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128404, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128404) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128404, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1414), '}'), '')))), '[^-]', ''))) AS ?step2415) . BIND(((?step2415 + ?targetMotifMatchRegionMatchBeginPositionMF_02128405) - 1) AS ?thisPositionOn134) . BIND(?thisPositionOn134 AS ?thisPositionOn135) . BIND(?this AS ?pfs1t416) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfsb130) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfse131) . FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn134, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02128a129')) AS ?annotation129) . BIND(?this AS ?pfs128) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch421 faldo:location ?templateMotifSequenceMatchRegionO67883422 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67883424 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO67883MF_02128417 . ?templateMotifSequenceMatchRegionO67883422 faldo:begin ?templateMotifSequenceMatchBeginO67883423 . ?templateMotifSequenceMatchBeginO67883423 faldo:position ?templateMotifSequenceMatchBeginPositionO67883418 ; faldo:reference isoform:O67883-1 . ?templateMotifSequenceProfileAlignmentOperationO67883424 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . ?targetMotifMatch425 faldo:location ?targetMotifMatchRegionMatch426 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02128428 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO67883MF_02128419 . ?targetMotifMatchRegionMatch426 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02128427 . ?targetMotifMatchRegionMatchBeginMF_02128427 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02128420 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02128428 edam:has_input signature:MF_02128 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67883MF_02128417, 1, (STRLEN(?templateMotifCigarO67883MF_02128417) - STRLEN(REPLACE(?templateMotifCigarO67883MF_02128417, CONCAT('^(?:-*[^-]){', STR(((303 - ?templateMotifSequenceMatchBeginPositionO67883418) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1429) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67883MF_02128419, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128419) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128419, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1429), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67883MF_02128419, 1, (STRLEN(?targetMotifMatchCigarO67883MF_02128419) - STRLEN(REPLACE(?targetMotifMatchCigarO67883MF_02128419, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1429), '}'), '')))), '[^-]', ''))) AS ?step2430) . BIND(((?step2430 + ?targetMotifMatchRegionMatchBeginPositionMF_02128420) - 1) AS ?thisPositionOn142) . BIND(?thisPositionOn142 AS ?thisPositionOn143) . BIND(?this AS ?pfs1t431) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn142))) AS ?pfsb138) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn143))) AS ?pfse139) . FILTER (REGEX('[WYF]', SUBSTR(?thisSequenceValue, ?thisPositionOn142, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02128a137')) AS ?annotation137) . BIND(?this AS ?pfs136) . } }