CONSTRUCT { _:772153 up:source unirule:MF_02234 . _:772154 up:source unirule:MF_02234 . _:772155 up:source unirule:MF_02234 . _:772156 up:source unirule:MF_02234 . _:772157 up:source unirule:MF_02234 . _:772158 up:source unirule:MF_02234 . _:772159 up:source unirule:MF_02234 . _:772160 up:source unirule:MF_02234 . _:772161 up:source unirule:MF_02234 . _:772162 up:source unirule:MF_02234 . _:772163 up:source unirule:MF_02234 . _:772164 up:source unirule:MF_02234 . _:772165 up:source unirule:MF_02234 . _:772166 up:source unirule:MF_02234 . _:772167 up:source unirule:MF_02234 . _:772168 up:source unirule:MF_02234 . _:772169 up:source unirule:MF_02234 . _:772170 up:source unirule:MF_02234 . _:772171 up:source unirule:MF_02234 . _:772172 up:source unirule:MF_02234 . _:772173 up:source unirule:MF_02234 . _:772174 up:source unirule:MF_02234 . _:772175 up:source unirule:MF_02234 . _:772176 up:source unirule:MF_02234 . _:772177 up:source unirule:MF_02234 . _:772178 up:source unirule:MF_02234 . _:772179 up:source unirule:MF_02234 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 , ?annotation8 , ?annotation10 ; up:classifiedWith GO:0005737 , GO:0006526 , GO:0043857 , keyword:28 , keyword:55 , keyword:808 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '2.1.3.9' ; up:fullName 'N-acetylornithine carbamoyltransferase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'N-acetyl-L-ornithine transcarbamylase' ; up:shortName 'AOTCase' , 'Acetylornithine transcarbamylase' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel "argF'" . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Catalyzes the transfer of the carbamoyl group from carbamoyl phosphate to the delta-amino group of N(2)-acetyl-L-ornithine to produce N(2)-acetyl-L-citrulline. This is a step in an alternative arginine biosynthesis pathway.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/18609>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.1.3.9>. ?annotation6 a up:Pathway_Annotation ; rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis.' . ?annotation7 a up:Subunit_Annotation ; rdfs:comment 'Homotrimer.' . ?annotation8 a up:Subcellular_Location_Annotation . ?annotation8li9 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation10 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the aspartate/ornithine carbamoyltransferase superfamily. AOTCase family.' . ?pfs11 up:annotation ?annotation12 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; up:ligand ?ligand15 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?ligand15 rdfs:subClassOf chebi:58228 . ?pfs18 up:annotation ?annotation19 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; up:ligand ?ligand22 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?ligand22 rdfs:subClassOf chebi:58228 . ?pfs25 up:annotation ?annotation26 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; up:ligand ?ligand29 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?ligand29 rdfs:subClassOf chebi:58228 . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; up:ligand ?ligand36 ; rdf:type up:Binding_Site_Annotation . ?pfsb34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand36 rdfs:subClassOf chebi:58228 . ?pfs39 up:annotation ?annotation40 . ?annotation40 faldo:begin ?pfsb41 ; faldo:end ?pfse42 ; up:ligand ?ligand43 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfse42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?ligand43 rdfs:subClassOf chebi:58228 . ?pfs46 up:annotation ?annotation47 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; up:ligand ?ligand50 ; rdf:type up:Binding_Site_Annotation . ?pfsb48 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?ligand50 rdfs:subClassOf chebi:57805 . ?pfs53 up:annotation ?annotation54 . ?annotation54 faldo:begin ?pfsb55 ; faldo:end ?pfse56 ; up:ligand ?ligand57 ; rdf:type up:Binding_Site_Annotation . ?pfsb55 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfse56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?ligand57 rdfs:subClassOf chebi:57805 . ?pfs60 up:annotation ?annotation61 . ?annotation61 faldo:begin ?pfsb62 ; faldo:end ?pfse63 ; up:ligand ?ligand64 ; rdf:type up:Binding_Site_Annotation . ?pfsb62 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?pfse63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?ligand64 rdfs:subClassOf chebi:57805 . ?pfs67 up:annotation ?annotation68 . ?annotation68 faldo:begin ?pfsb69 ; faldo:end ?pfse70 ; up:ligand ?ligand71 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb69 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?pfse70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?ligand71 rdfs:subClassOf chebi:58228 . ?pfs74 up:annotation ?annotation75 . ?annotation75 faldo:begin ?pfsb76 ; faldo:end ?pfse77 ; rdf:type up:Site_Annotation ; rdfs:comment 'Key residue in conferring substrate specificity for N-acetyl-L-ornithine versus N-succinyl-L-ornithine' . ?pfsb76 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?pfse77 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?pfs80 up:annotation ?annotation81 . ?annotation81 faldo:begin ?pfsb82 ; faldo:end ?pfse83 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-carboxylysine' . ?pfsb82 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?pfse83 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . _:772180 a rdf:Statement ; up:attribution _:772153 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:772181 a rdf:Statement ; up:attribution _:772154 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:772182 a rdf:Statement ; up:attribution _:772155 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:772183 a rdf:Statement ; up:attribution _:772156 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:772184 a rdf:Statement ; up:attribution _:772157 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:772185 a rdf:Statement ; up:attribution _:772158 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:772186 a rdf:Statement ; up:attribution _:772159 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:772187 a rdf:Statement ; up:attribution _:772160 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:772188 a rdf:Statement ; up:attribution _:772161 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:772189 a rdf:Statement ; up:attribution _:772162 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:28 . _:772190 a rdf:Statement ; up:attribution _:772163 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:55 . _:772191 a rdf:Statement ; up:attribution _:772164 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:772192 a rdf:Statement ; up:attribution _:772165 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:772193 a rdf:Statement ; up:attribution _:772166 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0043857 . _:772194 a rdf:Statement ; up:attribution _:772167 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006526 . _:772195 a rdf:Statement ; up:attribution _:772168 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:772196 a rdf:Statement ; up:source unirule:MF_02234 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:772197 a rdf:Statement ; up:attribution _:772169 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:772198 a rdf:Statement ; up:source unirule:MF_02234 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:772199 a rdf:Statement ; up:attribution _:772170 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:772200 a rdf:Statement ; up:source unirule:MF_02234 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:772201 a rdf:Statement ; up:attribution _:772171 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:772202 a rdf:Statement ; up:source unirule:MF_02234 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:772203 a rdf:Statement ; up:attribution _:772172 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:772204 a rdf:Statement ; up:source unirule:MF_02234 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:772205 a rdf:Statement ; up:attribution _:772173 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:772206 a rdf:Statement ; up:source unirule:MF_02234 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:772207 a rdf:Statement ; up:attribution _:772174 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:772208 a rdf:Statement ; up:source unirule:MF_02234 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:772209 a rdf:Statement ; up:attribution _:772175 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:772210 a rdf:Statement ; up:source unirule:MF_02234 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:772211 a rdf:Statement ; up:attribution _:772176 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:772212 a rdf:Statement ; up:source unirule:MF_02234 ; rdf:subject ?pfs67 ; rdf:predicate up:annotation ; rdf:object ?annotation68 . _:772213 a rdf:Statement ; up:attribution _:772177 ; rdf:subject ?pfs67 ; rdf:predicate up:annotation ; rdf:object ?annotation68 . _:772214 a rdf:Statement ; up:source unirule:MF_02234 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:772215 a rdf:Statement ; up:attribution _:772178 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:772216 a rdf:Statement ; up:source unirule:MF_02234 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:772217 a rdf:Statement ; up:attribution _:772179 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02234 #Rule MF_02234 Created by:? on:2019-10-15 Modified by:Catherine Rivoire on:2024-11-05 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02234 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_02234a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_02234a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_02234a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_02234a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_02234a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_02234a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_02234a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_02234a10')) AS ?annotation10) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionQ8P8J291 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J293 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8P8J2MF_0223486 . ?templateMotifSequenceMatchRegionQ8P8J291 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J292 . ?templateMotifSequenceMatchBeginQ8P8J292 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J287 ; faldo:reference isoform:Q8P8J2-1 . ?templateMotifSequenceProfileAlignmentOperationQ8P8J293 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . ?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0223497 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8P8J2MF_0223488 . ?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0223496 . ?targetMotifMatchRegionMatchBeginMF_0223496 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0223489 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0223497 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_0223486, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_0223486) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_0223486, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionQ8P8J287) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_0223488, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_0223488) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_0223488, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_0223488, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_0223488) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_0223488, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) . BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0223489) - 1) AS ?thisPositionOn16) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_0223486, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_0223486) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_0223486, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionQ8P8J287) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_0223488, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_0223488) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_0223488, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_0223488, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_0223488) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_0223488, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) . BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0223489) - 1) AS ?thisPositionOn17) . BIND(?this AS ?pfs1t102) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) . FILTER (REGEX('S[ARNDCQEGHILKMFPSTWYVBZJUOX]RT', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) . BIND(URI(CONCAT(STR(?this), '#MF_02234a12')) AS ?annotation12) . BIND(?this AS ?pfs11) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2108 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2110 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8P8J2MF_02234103 . ?templateMotifSequenceMatchRegionQ8P8J2108 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2109 . ?templateMotifSequenceMatchBeginQ8P8J2109 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2104 ; faldo:reference isoform:Q8P8J2-1 . ?templateMotifSequenceProfileAlignmentOperationQ8P8J2110 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . ?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234114 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234105 . ?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234113 . ?targetMotifMatchRegionMatchBeginMF_02234113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234106 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02234114 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234103, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234103) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234103, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionQ8P8J2104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234105, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234105) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234105, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234105) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) . BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_02234106) - 1) AS ?thisPositionOn23) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234103, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234103) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234103, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionQ8P8J2104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234105, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234105) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234105, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234105) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) . BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_02234106) - 1) AS ?thisPositionOn24) . BIND(?this AS ?pfs1t119) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)) = 'HPCQ')) . BIND(URI(CONCAT(STR(?this), '#MF_02234a19')) AS ?annotation19) . BIND(?this AS ?pfs18) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2125 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2127 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8P8J2MF_02234120 . ?templateMotifSequenceMatchRegionQ8P8J2125 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2126 . ?templateMotifSequenceMatchBeginQ8P8J2126 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2121 ; faldo:reference isoform:Q8P8J2-1 . ?templateMotifSequenceProfileAlignmentOperationQ8P8J2127 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . ?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234131 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234122 . ?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234130 . ?targetMotifMatchRegionMatchBeginMF_02234130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234123 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02234131 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234120, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234120) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234120, CONCAT('^(?:-*[^-]){', STR(((294 - ?templateMotifSequenceMatchBeginPositionQ8P8J2121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234122, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234122) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234122, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234122) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) . BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_02234123) - 1) AS ?thisPositionOn30) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234120, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234120) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234120, CONCAT('^(?:-*[^-]){', STR(((295 - ?templateMotifSequenceMatchBeginPositionQ8P8J2121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234122, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234122) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234122, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234122) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) . BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_02234123) - 1) AS ?thisPositionOn31) . BIND(?this AS ?pfs1t136) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, (?thisPositionOn31 - ?thisPositionOn30)) = 'CL')) . BIND(URI(CONCAT(STR(?this), '#MF_02234a26')) AS ?annotation26) . BIND(?this AS ?pfs25) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2142 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2144 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8P8J2MF_02234137 . ?templateMotifSequenceMatchRegionQ8P8J2142 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2143 . ?templateMotifSequenceMatchBeginQ8P8J2143 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2138 ; faldo:reference isoform:Q8P8J2-1 . ?templateMotifSequenceProfileAlignmentOperationQ8P8J2144 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . ?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234148 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234139 . ?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234147 . ?targetMotifMatchRegionMatchBeginMF_02234147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234140 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02234148 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234137, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234137) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234137, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionQ8P8J2138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234139, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234139) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234139, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234139) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) . BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_02234140) - 1) AS ?thisPositionOn37) . BIND(?thisPositionOn37 AS ?thisPositionOn38) . BIND(?this AS ?pfs1t151) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'W')) . BIND(URI(CONCAT(STR(?this), '#MF_02234a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2157 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2159 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8P8J2MF_02234152 . ?templateMotifSequenceMatchRegionQ8P8J2157 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2158 . ?templateMotifSequenceMatchBeginQ8P8J2158 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2153 ; faldo:reference isoform:Q8P8J2-1 . ?templateMotifSequenceProfileAlignmentOperationQ8P8J2159 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . ?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234163 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234154 . ?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234162 . ?targetMotifMatchRegionMatchBeginMF_02234162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234155 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02234163 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234152, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234152) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234152, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionQ8P8J2153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234154, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234154) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234154, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234154) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) . BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_02234155) - 1) AS ?thisPositionOn44) . BIND(?thisPositionOn44 AS ?thisPositionOn45) . BIND(?this AS ?pfs1t166) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_02234a40')) AS ?annotation40) . BIND(?this AS ?pfs39) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2172 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2174 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8P8J2MF_02234167 . ?templateMotifSequenceMatchRegionQ8P8J2172 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2173 . ?templateMotifSequenceMatchBeginQ8P8J2173 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2168 ; faldo:reference isoform:Q8P8J2-1 . ?templateMotifSequenceProfileAlignmentOperationQ8P8J2174 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . ?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234178 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234169 . ?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234177 . ?targetMotifMatchRegionMatchBeginMF_02234177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234170 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02234178 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234167, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234167) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234167, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionQ8P8J2168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234169, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234169) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234169, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234169) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) . BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_02234170) - 1) AS ?thisPositionOn51) . BIND(?thisPositionOn51 AS ?thisPositionOn52) . BIND(?this AS ?pfs1t181) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_02234a47')) AS ?annotation47) . BIND(?this AS ?pfs46) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2187 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2189 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8P8J2MF_02234182 . ?templateMotifSequenceMatchRegionQ8P8J2187 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2188 . ?templateMotifSequenceMatchBeginQ8P8J2188 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2183 ; faldo:reference isoform:Q8P8J2-1 . ?templateMotifSequenceProfileAlignmentOperationQ8P8J2189 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . ?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234193 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234184 . ?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234192 . ?targetMotifMatchRegionMatchBeginMF_02234192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234185 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02234193 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234182, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234182) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234182, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionQ8P8J2183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234184, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234184) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234184, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234184) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) . BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_02234185) - 1) AS ?thisPositionOn58) . BIND(?thisPositionOn58 AS ?thisPositionOn59) . BIND(?this AS ?pfs1t196) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_02234a54')) AS ?annotation54) . BIND(?this AS ?pfs53) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch201 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2202 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2204 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8P8J2MF_02234197 . ?templateMotifSequenceMatchRegionQ8P8J2202 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2203 . ?templateMotifSequenceMatchBeginQ8P8J2203 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2198 ; faldo:reference isoform:Q8P8J2-1 . ?templateMotifSequenceProfileAlignmentOperationQ8P8J2204 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . ?targetMotifMatch205 faldo:location ?targetMotifMatchRegionMatch206 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234208 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234199 . ?targetMotifMatchRegionMatch206 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234207 . ?targetMotifMatchRegionMatchBeginMF_02234207 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234200 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02234208 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234197, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234197) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234197, CONCAT('^(?:-*[^-]){', STR(((295 - ?templateMotifSequenceMatchBeginPositionQ8P8J2198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234199, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234199) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234199, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234199) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) . BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_02234200) - 1) AS ?thisPositionOn65) . BIND(?thisPositionOn65 AS ?thisPositionOn66) . BIND(?this AS ?pfs1t211) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'L')) . BIND(URI(CONCAT(STR(?this), '#MF_02234a61')) AS ?annotation61) . BIND(?this AS ?pfs60) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch216 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2217 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2219 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8P8J2MF_02234212 . ?templateMotifSequenceMatchRegionQ8P8J2217 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2218 . ?templateMotifSequenceMatchBeginQ8P8J2218 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2213 ; faldo:reference isoform:Q8P8J2-1 . ?templateMotifSequenceProfileAlignmentOperationQ8P8J2219 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . ?targetMotifMatch220 faldo:location ?targetMotifMatchRegionMatch221 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234223 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234214 . ?targetMotifMatchRegionMatch221 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234222 . ?targetMotifMatchRegionMatchBeginMF_02234222 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234215 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02234223 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234212, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234212) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234212, CONCAT('^(?:-*[^-]){', STR(((322 - ?templateMotifSequenceMatchBeginPositionQ8P8J2213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234214, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234214) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234214, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234214) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) . BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_02234215) - 1) AS ?thisPositionOn72) . BIND(?thisPositionOn72 AS ?thisPositionOn73) . BIND(?this AS ?pfs1t226) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_02234a68')) AS ?annotation68) . BIND(?this AS ?pfs67) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch231 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2232 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2234 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8P8J2MF_02234227 . ?templateMotifSequenceMatchRegionQ8P8J2232 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2233 . ?templateMotifSequenceMatchBeginQ8P8J2233 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2228 ; faldo:reference isoform:Q8P8J2-1 . ?templateMotifSequenceProfileAlignmentOperationQ8P8J2234 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . ?targetMotifMatch235 faldo:location ?targetMotifMatchRegionMatch236 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234238 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234229 . ?targetMotifMatchRegionMatch236 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234237 . ?targetMotifMatchRegionMatchBeginMF_02234237 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234230 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02234238 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234227, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234227) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234227, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionQ8P8J2228) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1239) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234229, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234229) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234229, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234229) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), '')))), '[^-]', ''))) AS ?step2240) . BIND(((?step2240 + ?targetMotifMatchRegionMatchBeginPositionMF_02234230) - 1) AS ?thisPositionOn78) . BIND(?thisPositionOn78 AS ?thisPositionOn79) . BIND(?this AS ?pfs1t241) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse77) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_02234a75')) AS ?annotation75) . BIND(?this AS ?pfs74) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch246 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2247 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2249 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8P8J2MF_02234242 . ?templateMotifSequenceMatchRegionQ8P8J2247 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2248 . ?templateMotifSequenceMatchBeginQ8P8J2248 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2243 ; faldo:reference isoform:Q8P8J2-1 . ?templateMotifSequenceProfileAlignmentOperationQ8P8J2249 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . ?targetMotifMatch250 faldo:location ?targetMotifMatchRegionMatch251 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234253 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234244 . ?targetMotifMatchRegionMatch251 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234252 . ?targetMotifMatchRegionMatchBeginMF_02234252 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234245 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02234253 edam:has_input signature:MF_02234 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234242, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234242) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234242, CONCAT('^(?:-*[^-]){', STR(((302 - ?templateMotifSequenceMatchBeginPositionQ8P8J2243) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1254) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234244, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234244) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234244, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234244) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), '')))), '[^-]', ''))) AS ?step2255) . BIND(((?step2255 + ?targetMotifMatchRegionMatchBeginPositionMF_02234245) - 1) AS ?thisPositionOn84) . BIND(?thisPositionOn84 AS ?thisPositionOn85) . BIND(?this AS ?pfs1t256) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb82) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse83) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_02234a81')) AS ?annotation81) . BIND(?this AS ?pfs80) . } }