CONSTRUCT { _:763386 up:source unirule:MF_02235 . _:763387 up:source unirule:MF_02235 . _:763388 up:source unirule:MF_02235 . _:763389 up:source unirule:MF_02235 . _:763390 up:source unirule:MF_02235 . _:763391 up:source unirule:MF_02235 . _:763392 up:source unirule:MF_02235 . _:763393 up:source unirule:MF_02235 . _:763394 up:source unirule:MF_02235 . _:763395 up:source unirule:MF_02235 . _:763396 up:source unirule:MF_02235 . _:763397 up:source unirule:MF_02235 . _:763398 up:source unirule:MF_02235 . _:763399 up:source unirule:MF_02235 . _:763400 up:source unirule:MF_02235 . _:763401 up:source unirule:MF_02235 . _:763402 up:source unirule:MF_02235 . _:763403 up:source unirule:MF_02235 . _:763404 up:source unirule:MF_02235 . _:763405 up:source unirule:MF_02235 . _:763406 up:source unirule:MF_02235 . _:763407 up:source unirule:MF_02235 . _:763408 up:source unirule:MF_02235 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 , ?annotation8 ; up:classifiedWith GO:0006526 , GO:0016743 , keyword:28 , keyword:55 , keyword:808 ; up:recommendedName ?name0 . ?name0 up:ecName '2.1.3.11' ; up:fullName 'N-succinylornithine carbamoyltransferase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'N-succinyl-L-ornithine transcarbamylase' ; up:shortName 'SOTCase' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel "argF'" . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Catalyzes the transfer of the carbamoyl group from carbamoyl phosphate to the delta-amino group of N(2)-succinyl-L-ornithine to produce N(2)-succinyl-L-citrulline. Is essential for arginine biosynthesis.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/25884>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.1.3.11>. ?annotation6 a up:Pathway_Annotation ; rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis.' . ?annotation7 a up:Subunit_Annotation ; rdfs:comment 'Homotrimer.' . ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the aspartate/ornithine carbamoyltransferase superfamily. SOTCase family.' . ?pfs9 up:annotation ?annotation10 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; up:ligand ?ligand13 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?ligand13 rdfs:subClassOf chebi:58228 . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:58228 . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf chebi:58228 . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:58228 . ?pfs37 up:annotation ?annotation38 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf chebi:58228 . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:58514 . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; up:ligand ?ligand55 ; rdf:type up:Binding_Site_Annotation . ?pfsb53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?ligand55 rdfs:subClassOf chebi:58514 . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf chebi:58514 . ?pfs65 up:annotation ?annotation66 . ?annotation66 faldo:begin ?pfsb67 ; faldo:end ?pfse68 ; up:ligand ?ligand69 ; rdf:type up:Binding_Site_Annotation . ?pfsb67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?pfse68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?ligand69 rdfs:subClassOf chebi:58514 . ?pfs72 up:annotation ?annotation73 . ?annotation73 faldo:begin ?pfsb74 ; faldo:end ?pfse75 ; up:ligand ?ligand76 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb74 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?pfse75 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?ligand76 rdfs:subClassOf chebi:58228 . _:763409 a rdf:Statement ; up:attribution _:763386 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:763410 a rdf:Statement ; up:attribution _:763387 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:763411 a rdf:Statement ; up:attribution _:763388 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:763412 a rdf:Statement ; up:attribution _:763389 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:763413 a rdf:Statement ; up:attribution _:763390 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:763414 a rdf:Statement ; up:attribution _:763391 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:763415 a rdf:Statement ; up:attribution _:763392 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:763416 a rdf:Statement ; up:attribution _:763393 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:763417 a rdf:Statement ; up:attribution _:763394 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:28 . _:763418 a rdf:Statement ; up:attribution _:763395 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:55 . _:763419 a rdf:Statement ; up:attribution _:763396 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:763420 a rdf:Statement ; up:attribution _:763397 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016743 . _:763421 a rdf:Statement ; up:attribution _:763398 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006526 . _:763422 a rdf:Statement ; up:source unirule:MF_02235 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:763423 a rdf:Statement ; up:attribution _:763399 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:763424 a rdf:Statement ; up:source unirule:MF_02235 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:763425 a rdf:Statement ; up:attribution _:763400 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:763426 a rdf:Statement ; up:source unirule:MF_02235 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:763427 a rdf:Statement ; up:attribution _:763401 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:763428 a rdf:Statement ; up:source unirule:MF_02235 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:763429 a rdf:Statement ; up:attribution _:763402 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:763430 a rdf:Statement ; up:source unirule:MF_02235 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:763431 a rdf:Statement ; up:attribution _:763403 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:763432 a rdf:Statement ; up:source unirule:MF_02235 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:763433 a rdf:Statement ; up:attribution _:763404 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:763434 a rdf:Statement ; up:source unirule:MF_02235 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:763435 a rdf:Statement ; up:attribution _:763405 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:763436 a rdf:Statement ; up:source unirule:MF_02235 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:763437 a rdf:Statement ; up:attribution _:763406 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:763438 a rdf:Statement ; up:source unirule:MF_02235 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:763439 a rdf:Statement ; up:attribution _:763407 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:763440 a rdf:Statement ; up:source unirule:MF_02235 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:763441 a rdf:Statement ; up:attribution _:763408 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02235 #Rule MF_02235 Created by:crivoire on:2019-10-16 Modified by:ecastro on:2022-11-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02235 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_02235a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_02235a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_02235a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_02235a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_02235a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_02235a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_02235a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionE1WKT584 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT586 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarE1WKT5MF_0223579 . ?templateMotifSequenceMatchRegionE1WKT584 faldo:begin ?templateMotifSequenceMatchBeginE1WKT585 . ?templateMotifSequenceMatchBeginE1WKT585 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT580 ; faldo:reference isoform:E1WKT5-1 . ?templateMotifSequenceProfileAlignmentOperationE1WKT586 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . ?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0223590 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarE1WKT5MF_0223581 . ?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0223589 . ?targetMotifMatchRegionMatchBeginMF_0223589 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0223582 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0223590 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_0223579, 1, (STRLEN(?templateMotifCigarE1WKT5MF_0223579) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_0223579, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionE1WKT580) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_0223581, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_0223581) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_0223581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_0223581, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_0223581) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_0223581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) . BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0223582) - 1) AS ?thisPositionOn14) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_0223579, 1, (STRLEN(?templateMotifCigarE1WKT5MF_0223579) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_0223579, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionE1WKT580) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_0223581, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_0223581) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_0223581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_0223581, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_0223581) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_0223581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) . BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0223582) - 1) AS ?thisPositionOn15) . BIND(?this AS ?pfs1t95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) . FILTER (REGEX('S[LM]RT', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) . BIND(URI(CONCAT(STR(?this), '#MF_02235a10')) AS ?annotation10) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch100 faldo:location ?templateMotifSequenceMatchRegionE1WKT5101 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5103 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarE1WKT5MF_0223596 . ?templateMotifSequenceMatchRegionE1WKT5101 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5102 . ?templateMotifSequenceMatchBeginE1WKT5102 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT597 ; faldo:reference isoform:E1WKT5-1 . ?templateMotifSequenceProfileAlignmentOperationE1WKT5103 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . ?targetMotifMatch104 faldo:location ?targetMotifMatchRegionMatch105 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235107 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarE1WKT5MF_0223598 . ?targetMotifMatchRegionMatch105 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235106 . ?targetMotifMatchRegionMatchBeginMF_02235106 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0223599 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02235107 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_0223596, 1, (STRLEN(?templateMotifCigarE1WKT5MF_0223596) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_0223596, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionE1WKT597) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_0223598, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_0223598) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_0223598, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_0223598, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_0223598) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_0223598, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) . BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0223599) - 1) AS ?thisPositionOn21) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_0223596, 1, (STRLEN(?templateMotifCigarE1WKT5MF_0223596) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_0223596, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionE1WKT597) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_0223598, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_0223598) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_0223598, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_0223598, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_0223598) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_0223598, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) . BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_0223599) - 1) AS ?thisPositionOn22) . BIND(?this AS ?pfs1t112) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER (REGEX('HP[LC]Q', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) . BIND(URI(CONCAT(STR(?this), '#MF_02235a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionE1WKT5118 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5120 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarE1WKT5MF_02235113 . ?templateMotifSequenceMatchRegionE1WKT5118 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5119 . ?templateMotifSequenceMatchBeginE1WKT5119 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT5114 ; faldo:reference isoform:E1WKT5-1 . ?templateMotifSequenceProfileAlignmentOperationE1WKT5120 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . ?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235124 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarE1WKT5MF_02235115 . ?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235123 . ?targetMotifMatchRegionMatchBeginMF_02235123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02235116 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02235124 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235113, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235113) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235113, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionE1WKT5114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235115, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235115) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235115, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235115) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) . BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_02235116) - 1) AS ?thisPositionOn28) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235113, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235113) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235113, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionE1WKT5114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235115, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235115) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235115, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235115) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) . BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_02235116) - 1) AS ?thisPositionOn29) . BIND(?this AS ?pfs1t129) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)) = 'CL')) . BIND(URI(CONCAT(STR(?this), '#MF_02235a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionE1WKT5135 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5137 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarE1WKT5MF_02235130 . ?templateMotifSequenceMatchRegionE1WKT5135 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5136 . ?templateMotifSequenceMatchBeginE1WKT5136 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT5131 ; faldo:reference isoform:E1WKT5-1 . ?templateMotifSequenceProfileAlignmentOperationE1WKT5137 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . ?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235141 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarE1WKT5MF_02235132 . ?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235140 . ?targetMotifMatchRegionMatchBeginMF_02235140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02235133 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02235141 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235130, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235130) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235130, CONCAT('^(?:-*[^-]){', STR(((75 - ?templateMotifSequenceMatchBeginPositionE1WKT5131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235132, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235132) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235132, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235132) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) . BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_02235133) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs1t144) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'W')) . BIND(URI(CONCAT(STR(?this), '#MF_02235a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionE1WKT5150 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5152 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarE1WKT5MF_02235145 . ?templateMotifSequenceMatchRegionE1WKT5150 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5151 . ?templateMotifSequenceMatchBeginE1WKT5151 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT5146 ; faldo:reference isoform:E1WKT5-1 . ?templateMotifSequenceProfileAlignmentOperationE1WKT5152 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . ?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235156 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarE1WKT5MF_02235147 . ?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235155 . ?targetMotifMatchRegionMatchBeginMF_02235155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02235148 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02235156 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235145, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235145) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235145, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionE1WKT5146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235147, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235147) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235147, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235147) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) . BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_02235148) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t159) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_02235a38')) AS ?annotation38) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionE1WKT5165 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5167 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarE1WKT5MF_02235160 . ?templateMotifSequenceMatchRegionE1WKT5165 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5166 . ?templateMotifSequenceMatchBeginE1WKT5166 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT5161 ; faldo:reference isoform:E1WKT5-1 . ?templateMotifSequenceProfileAlignmentOperationE1WKT5167 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . ?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235171 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarE1WKT5MF_02235162 . ?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235170 . ?targetMotifMatchRegionMatchBeginMF_02235170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02235163 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02235171 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235160, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235160) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235160, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionE1WKT5161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235162, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235162) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235162, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235162) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) . BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_02235163) - 1) AS ?thisPositionOn49) . BIND(?thisPositionOn49 AS ?thisPositionOn50) . BIND(?this AS ?pfs1t174) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_02235a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionE1WKT5180 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5182 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarE1WKT5MF_02235175 . ?templateMotifSequenceMatchRegionE1WKT5180 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5181 . ?templateMotifSequenceMatchBeginE1WKT5181 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT5176 ; faldo:reference isoform:E1WKT5-1 . ?templateMotifSequenceProfileAlignmentOperationE1WKT5182 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . ?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235186 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarE1WKT5MF_02235177 . ?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235185 . ?targetMotifMatchRegionMatchBeginMF_02235185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02235178 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02235186 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235175, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235175) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235175, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionE1WKT5176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235177, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235177) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235177, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235177) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) . BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_02235178) - 1) AS ?thisPositionOn56) . BIND(?thisPositionOn56 AS ?thisPositionOn57) . BIND(?this AS ?pfs1t189) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_02235a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionE1WKT5195 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5197 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarE1WKT5MF_02235190 . ?templateMotifSequenceMatchRegionE1WKT5195 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5196 . ?templateMotifSequenceMatchBeginE1WKT5196 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT5191 ; faldo:reference isoform:E1WKT5-1 . ?templateMotifSequenceProfileAlignmentOperationE1WKT5197 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . ?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235201 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarE1WKT5MF_02235192 . ?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235200 . ?targetMotifMatchRegionMatchBeginMF_02235200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02235193 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02235201 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235190, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235190) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235190, CONCAT('^(?:-*[^-]){', STR(((236 - ?templateMotifSequenceMatchBeginPositionE1WKT5191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235192, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235192) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235192, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235192) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) . BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_02235193) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs1t204) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_02235a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionE1WKT5210 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5212 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarE1WKT5MF_02235205 . ?templateMotifSequenceMatchRegionE1WKT5210 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5211 . ?templateMotifSequenceMatchBeginE1WKT5211 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT5206 ; faldo:reference isoform:E1WKT5-1 . ?templateMotifSequenceProfileAlignmentOperationE1WKT5212 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . ?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235216 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarE1WKT5MF_02235207 . ?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235215 . ?targetMotifMatchRegionMatchBeginMF_02235215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02235208 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02235216 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235205, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235205) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235205, CONCAT('^(?:-*[^-]){', STR(((278 - ?templateMotifSequenceMatchBeginPositionE1WKT5206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235207, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235207) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235207, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235207) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) . BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_02235208) - 1) AS ?thisPositionOn70) . BIND(?thisPositionOn70 AS ?thisPositionOn71) . BIND(?this AS ?pfs1t219) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_02235a66')) AS ?annotation66) . BIND(?this AS ?pfs65) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionE1WKT5225 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5227 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarE1WKT5MF_02235220 . ?templateMotifSequenceMatchRegionE1WKT5225 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5226 . ?templateMotifSequenceMatchBeginE1WKT5226 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT5221 ; faldo:reference isoform:E1WKT5-1 . ?templateMotifSequenceProfileAlignmentOperationE1WKT5227 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . ?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235231 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarE1WKT5MF_02235222 . ?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235230 . ?targetMotifMatchRegionMatchBeginMF_02235230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02235223 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02235231 edam:has_input signature:MF_02235 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235220, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235220) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235220, CONCAT('^(?:-*[^-]){', STR(((302 - ?templateMotifSequenceMatchBeginPositionE1WKT5221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235222, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235222) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235222, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235222) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) . BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_02235223) - 1) AS ?thisPositionOn77) . BIND(?thisPositionOn77 AS ?thisPositionOn78) . BIND(?this AS ?pfs1t234) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_02235a73')) AS ?annotation73) . BIND(?this AS ?pfs72) . } }