CONSTRUCT { _:814745 up:source unirule:MF_03101 . _:814746 up:source unirule:MF_03101 . _:814747 up:source unirule:MF_03101 . _:814748 up:source unirule:MF_03101 . _:814749 up:source unirule:MF_03101 . _:814750 up:source unirule:MF_03101 . _:814751 up:source unirule:MF_03101 . _:814752 up:source unirule:MF_03101 . _:814753 up:source unirule:MF_03101 . _:814754 up:source unirule:MF_03101 . _:814755 up:source unirule:MF_03101 . _:814756 up:source unirule:MF_03101 . _:814757 up:source unirule:MF_03101 . _:814758 up:source unirule:MF_03101 . _:814759 up:source unirule:MF_03101 . _:814760 up:source unirule:MF_03101 . _:814761 up:source unirule:MF_03101 . _:814762 up:source unirule:MF_03101 . _:814763 up:source unirule:MF_03101 . _:814764 up:source unirule:MF_03101 . _:814765 up:source unirule:MF_03101 . _:814766 up:source unirule:MF_03101 . _:814767 up:source unirule:MF_03101 . _:814768 up:source unirule:MF_03101 . _:814769 up:source unirule:MF_03101 . _:814770 up:source unirule:MF_03101 . _:814771 up:source unirule:MF_03101 . _:814772 up:source unirule:MF_03101 . _:814773 up:source unirule:MF_03101 . _:814774 up:source unirule:MF_03101 . _:814775 up:source unirule:MF_03101 . _:814776 up:source unirule:MF_03101 . _:814777 up:source unirule:MF_03101 . _:814778 up:source unirule:MF_03101 . _:814779 up:source unirule:MF_03101 . _:814780 up:source unirule:MF_03101 . ?this up:annotation ?annotation0 , ?annotation2 , ?annotation3 , ?annotation4 ; up:classifiedWith GO:0008612 , GO:0019135 , keyword:386 , keyword:408 , keyword:479 , keyword:503 , keyword:560 . ?annotation0 up:activity ?activity1 ; rdf:type up:Catalytic_Activity_Annotation . ?activity1 up:catalyticActivity <http://rdf.rhea-db.org/14101>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.14.99.29>. ?annotation2 up:cofactor chebi:29033 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 2 Fe(2+) ions per subunit.' . ?annotation3 a up:Pathway_Annotation ; rdfs:comment 'Protein modification; eIF5A hypusination.' . ?annotation4 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the deoxyhypusine hydroxylase family.' . ?case5 up:classifiedWith keyword:7 . ?case6 up:classifiedWith GO:0005634 , GO:0005737 , keyword:539 , keyword:963 . ?case8 up:alternativeName ?name10 , ?name11 , ?name12 ; up:recommendedName ?name9 . ?name9 up:ecName '1.14.99.29' ; up:fullName 'Deoxyhypusine hydroxylase' ; up:shortName 'DOHH' ; rdf:type up:Structured_Name . ?name10 up:fullName 'Deoxyhypusine dioxygenase' ; rdf:type up:Structured_Name . ?name11 up:fullName 'Deoxyhypusine monooxygenase' ; rdf:type up:Structured_Name . ?name12 up:fullName 'Ligand of eIF5A protein 1' ; rdf:type up:Structured_Name . ?case13 up:classifiedWith GO:0042406 , keyword:256 , keyword:472 . ?case16 up:alternativeName ?name18 , ?name19 ; up:recommendedName ?name17 . ?name17 up:ecName '1.14.99.29' ; up:fullName 'Deoxyhypusine hydroxylase' ; up:shortName 'DOHH' ; rdf:type up:Structured_Name . ?name18 up:fullName 'Deoxyhypusine dioxygenase' ; rdf:type up:Structured_Name . ?name19 up:fullName 'Deoxyhypusine monooxygenase' ; rdf:type up:Structured_Name . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N-acetylserine' . ?pfsb22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; up:ligand ?ligand30 ; rdf:type up:Binding_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand30 rdfs:subClassOf chebi:24875 . ?pfs33 up:annotation ?annotation34 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; up:ligand ?ligand37 ; rdf:type up:Binding_Site_Annotation . ?pfsb35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?ligand37 rdfs:subClassOf chebi:24875 . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation . ?pfsb42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf chebi:24875 . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation . ?pfsb49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf chebi:24875 . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf chebi:24875 . ?pfs61 up:annotation ?annotation62 . ?annotation62 faldo:begin ?pfsb63 ; faldo:end ?pfse64 ; up:ligand ?ligand65 ; rdf:type up:Binding_Site_Annotation . ?pfsb63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?ligand65 rdfs:subClassOf chebi:24875 . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; up:ligand ?ligand72 ; rdf:type up:Binding_Site_Annotation . ?pfsb70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?ligand72 rdfs:subClassOf chebi:24875 . ?pfs75 up:annotation ?annotation76 . ?annotation76 faldo:begin ?pfsb77 ; faldo:end ?pfse78 ; up:ligand ?ligand79 ; rdf:type up:Binding_Site_Annotation . ?pfsb77 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?pfse78 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . ?ligand79 rdfs:subClassOf chebi:24875 . ?pfs82 up:annotation ?annotation83 . ?annotation83 faldo:begin ?pfsb84 ; faldo:end ?pfse85 ; rdf:type up:Initiator_Methionine_Annotation ; rdfs:comment 'Removed' . ?pfsb84 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . ?pfse85 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . _:814781 a rdf:Statement ; up:attribution _:814745 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:814782 a rdf:Statement ; up:attribution _:814746 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:814783 a rdf:Statement ; up:attribution _:814747 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:814784 a rdf:Statement ; up:attribution _:814748 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:814785 a rdf:Statement ; up:attribution _:814749 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:386 . _:814786 a rdf:Statement ; up:attribution _:814750 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:814787 a rdf:Statement ; up:attribution _:814751 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:814788 a rdf:Statement ; up:attribution _:814752 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:503 . _:814789 a rdf:Statement ; up:attribution _:814753 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:814790 a rdf:Statement ; up:attribution _:814754 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019135 . _:814791 a rdf:Statement ; up:attribution _:814755 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008612 . _:814792 a rdf:Statement ; up:attribution _:814756 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:7 . _:814793 a rdf:Statement ; up:attribution _:814757 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:814794 a rdf:Statement ; up:attribution _:814758 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object keyword:539 . _:814795 a rdf:Statement ; up:attribution _:814759 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:814796 a rdf:Statement ; up:attribution _:814760 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005634 . _:814797 a rdf:Statement ; up:attribution _:814761 ; rdf:subject ?case8 ; rdf:predicate up:recommendedName ; rdf:object ?name9 . _:814798 a rdf:Statement ; up:attribution _:814762 ; rdf:subject ?case8 ; rdf:predicate up:alternativeName ; rdf:object ?name10 . _:814799 a rdf:Statement ; up:attribution _:814763 ; rdf:subject ?case8 ; rdf:predicate up:alternativeName ; rdf:object ?name11 . _:814800 a rdf:Statement ; up:attribution _:814764 ; rdf:subject ?case8 ; rdf:predicate up:alternativeName ; rdf:object ?name12 . _:814801 a rdf:Statement ; up:attribution _:814765 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object keyword:256 . _:814802 a rdf:Statement ; up:attribution _:814766 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:814803 a rdf:Statement ; up:attribution _:814767 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object GO:0042406 . _:814804 a rdf:Statement ; up:attribution _:814768 ; rdf:subject ?case16 ; rdf:predicate up:recommendedName ; rdf:object ?name17 . _:814805 a rdf:Statement ; up:attribution _:814769 ; rdf:subject ?case16 ; rdf:predicate up:alternativeName ; rdf:object ?name18 . _:814806 a rdf:Statement ; up:attribution _:814770 ; rdf:subject ?case16 ; rdf:predicate up:alternativeName ; rdf:object ?name19 . _:814807 a rdf:Statement ; up:source unirule:MF_03101 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:814808 a rdf:Statement ; up:attribution _:814771 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:814809 a rdf:Statement ; up:source unirule:MF_03101 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:814810 a rdf:Statement ; up:attribution _:814772 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:814811 a rdf:Statement ; up:source unirule:MF_03101 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:814812 a rdf:Statement ; up:attribution _:814773 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:814813 a rdf:Statement ; up:source unirule:MF_03101 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:814814 a rdf:Statement ; up:attribution _:814774 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:814815 a rdf:Statement ; up:source unirule:MF_03101 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:814816 a rdf:Statement ; up:attribution _:814775 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:814817 a rdf:Statement ; up:source unirule:MF_03101 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:814818 a rdf:Statement ; up:attribution _:814776 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:814819 a rdf:Statement ; up:source unirule:MF_03101 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:814820 a rdf:Statement ; up:attribution _:814777 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:814821 a rdf:Statement ; up:source unirule:MF_03101 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:814822 a rdf:Statement ; up:attribution _:814778 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:814823 a rdf:Statement ; up:source unirule:MF_03101 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:814824 a rdf:Statement ; up:attribution _:814779 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:814825 a rdf:Statement ; up:source unirule:MF_03101 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:814826 a rdf:Statement ; up:attribution _:814780 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03101 #Rule MF_03101 Created by:? on:2012-10-01 Modified by:Edouard de Castro on:2022-11-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_03101 . ?thisOrganism rdfs:subClassOf+ taxon:2759 . BIND(URI(CONCAT(STR(?this), '#MF_03101a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_03101a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_03101a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_03101a4')) AS ?annotation4) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionP4712093 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4712095 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP47120MF_0310188 . ?templateMotifSequenceMatchRegionP4712093 faldo:begin ?templateMotifSequenceMatchBeginP4712094 . ?templateMotifSequenceMatchBeginP4712094 faldo:position ?templateMotifSequenceMatchBeginPositionP4712089 ; faldo:reference isoform:P47120-1 . ?templateMotifSequenceProfileAlignmentOperationP4712095 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . ?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0310199 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP47120MF_0310190 . ?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0310198 . ?targetMotifMatchRegionMatchBeginMF_0310198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0310191 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0310199 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagacetyl) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4930 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP47120MF_0310188, 1, (STRLEN(?templateMotifCigarP47120MF_0310188) - STRLEN(REPLACE(?templateMotifCigarP47120MF_0310188, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP4712089) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP47120MF_0310190, 1, (STRLEN(?targetMotifMatchCigarP47120MF_0310190) - STRLEN(REPLACE(?targetMotifMatchCigarP47120MF_0310190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP47120MF_0310190, 1, (STRLEN(?targetMotifMatchCigarP47120MF_0310190) - STRLEN(REPLACE(?targetMotifMatchCigarP47120MF_0310190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) . BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0310191) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs1t102) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_03101a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionQ9BU89108 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BU89110 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9BU89MF_03101103 . ?templateMotifSequenceMatchRegionQ9BU89108 faldo:begin ?templateMotifSequenceMatchBeginQ9BU89109 . ?templateMotifSequenceMatchBeginQ9BU89109 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BU89104 ; faldo:reference isoform:Q9BU89-1 . ?templateMotifSequenceProfileAlignmentOperationQ9BU89110 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . ?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101114 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9BU89MF_03101105 . ?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101113 . ?targetMotifMatchRegionMatchBeginMF_03101113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101106 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03101114 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BU89MF_03101103, 1, (STRLEN(?templateMotifCigarQ9BU89MF_03101103) - STRLEN(REPLACE(?templateMotifCigarQ9BU89MF_03101103, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionQ9BU89104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101105, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101105) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101105, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101105) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) . BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_03101106) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs2t117) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_03101a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionQ9BU89123 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BU89125 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9BU89MF_03101118 . ?templateMotifSequenceMatchRegionQ9BU89123 faldo:begin ?templateMotifSequenceMatchBeginQ9BU89124 . ?templateMotifSequenceMatchBeginQ9BU89124 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BU89119 ; faldo:reference isoform:Q9BU89-1 . ?templateMotifSequenceProfileAlignmentOperationQ9BU89125 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . ?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101129 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9BU89MF_03101120 . ?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101128 . ?targetMotifMatchRegionMatchBeginMF_03101128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101121 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03101129 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BU89MF_03101118, 1, (STRLEN(?templateMotifCigarQ9BU89MF_03101118) - STRLEN(REPLACE(?templateMotifCigarQ9BU89MF_03101118, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionQ9BU89119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101120, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101120) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101120, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101120) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) . BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_03101121) - 1) AS ?thisPositionOn38) . BIND(?thisPositionOn38 AS ?thisPositionOn39) . BIND(?this AS ?pfs2t132) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_03101a34')) AS ?annotation34) . BIND(?this AS ?pfs33) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch137 faldo:location ?templateMotifSequenceMatchRegionQ9BU89138 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BU89140 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9BU89MF_03101133 . ?templateMotifSequenceMatchRegionQ9BU89138 faldo:begin ?templateMotifSequenceMatchBeginQ9BU89139 . ?templateMotifSequenceMatchBeginQ9BU89139 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BU89134 ; faldo:reference isoform:Q9BU89-1 . ?templateMotifSequenceProfileAlignmentOperationQ9BU89140 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . ?targetMotifMatch141 faldo:location ?targetMotifMatchRegionMatch142 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101144 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9BU89MF_03101135 . ?targetMotifMatchRegionMatch142 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101143 . ?targetMotifMatchRegionMatchBeginMF_03101143 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101136 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03101144 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BU89MF_03101133, 1, (STRLEN(?templateMotifCigarQ9BU89MF_03101133) - STRLEN(REPLACE(?templateMotifCigarQ9BU89MF_03101133, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionQ9BU89134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101135, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101135) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101135, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101135) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) . BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_03101136) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs2t147) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_03101a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionQ9BU89153 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BU89155 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9BU89MF_03101148 . ?templateMotifSequenceMatchRegionQ9BU89153 faldo:begin ?templateMotifSequenceMatchBeginQ9BU89154 . ?templateMotifSequenceMatchBeginQ9BU89154 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BU89149 ; faldo:reference isoform:Q9BU89-1 . ?templateMotifSequenceProfileAlignmentOperationQ9BU89155 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . ?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101159 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9BU89MF_03101150 . ?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101158 . ?targetMotifMatchRegionMatchBeginMF_03101158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101151 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03101159 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BU89MF_03101148, 1, (STRLEN(?templateMotifCigarQ9BU89MF_03101148) - STRLEN(REPLACE(?templateMotifCigarQ9BU89MF_03101148, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionQ9BU89149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101150, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101150) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101150, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101150) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) . BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_03101151) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs2t162) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_03101a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionQ9BU89168 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BU89170 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9BU89MF_03101163 . ?templateMotifSequenceMatchRegionQ9BU89168 faldo:begin ?templateMotifSequenceMatchBeginQ9BU89169 . ?templateMotifSequenceMatchBeginQ9BU89169 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BU89164 ; faldo:reference isoform:Q9BU89-1 . ?templateMotifSequenceProfileAlignmentOperationQ9BU89170 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . ?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101174 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9BU89MF_03101165 . ?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101173 . ?targetMotifMatchRegionMatchBeginMF_03101173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101166 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03101174 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BU89MF_03101163, 1, (STRLEN(?templateMotifCigarQ9BU89MF_03101163) - STRLEN(REPLACE(?templateMotifCigarQ9BU89MF_03101163, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionQ9BU89164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101165, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101165) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101165, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101165) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) . BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_03101166) - 1) AS ?thisPositionOn59) . BIND(?thisPositionOn59 AS ?thisPositionOn60) . BIND(?this AS ?pfs2t177) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_03101a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionQ9BU89183 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BU89185 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9BU89MF_03101178 . ?templateMotifSequenceMatchRegionQ9BU89183 faldo:begin ?templateMotifSequenceMatchBeginQ9BU89184 . ?templateMotifSequenceMatchBeginQ9BU89184 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BU89179 ; faldo:reference isoform:Q9BU89-1 . ?templateMotifSequenceProfileAlignmentOperationQ9BU89185 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . ?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101189 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9BU89MF_03101180 . ?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101188 . ?targetMotifMatchRegionMatchBeginMF_03101188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101181 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03101189 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BU89MF_03101178, 1, (STRLEN(?templateMotifCigarQ9BU89MF_03101178) - STRLEN(REPLACE(?templateMotifCigarQ9BU89MF_03101178, CONCAT('^(?:-*[^-]){', STR(((208 - ?templateMotifSequenceMatchBeginPositionQ9BU89179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101180, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101180) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101180, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101180) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) . BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_03101181) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs2t192) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_03101a62')) AS ?annotation62) . BIND(?this AS ?pfs61) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch197 faldo:location ?templateMotifSequenceMatchRegionQ9BU89198 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BU89200 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9BU89MF_03101193 . ?templateMotifSequenceMatchRegionQ9BU89198 faldo:begin ?templateMotifSequenceMatchBeginQ9BU89199 . ?templateMotifSequenceMatchBeginQ9BU89199 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BU89194 ; faldo:reference isoform:Q9BU89-1 . ?templateMotifSequenceProfileAlignmentOperationQ9BU89200 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . ?targetMotifMatch201 faldo:location ?targetMotifMatchRegionMatch202 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101204 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9BU89MF_03101195 . ?targetMotifMatchRegionMatch202 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101203 . ?targetMotifMatchRegionMatchBeginMF_03101203 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101196 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03101204 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BU89MF_03101193, 1, (STRLEN(?templateMotifCigarQ9BU89MF_03101193) - STRLEN(REPLACE(?templateMotifCigarQ9BU89MF_03101193, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionQ9BU89194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101195, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101195) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101195, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101195) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) . BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_03101196) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs2t207) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_03101a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch212 faldo:location ?templateMotifSequenceMatchRegionQ9BU89213 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BU89215 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9BU89MF_03101208 . ?templateMotifSequenceMatchRegionQ9BU89213 faldo:begin ?templateMotifSequenceMatchBeginQ9BU89214 . ?templateMotifSequenceMatchBeginQ9BU89214 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BU89209 ; faldo:reference isoform:Q9BU89-1 . ?templateMotifSequenceProfileAlignmentOperationQ9BU89215 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . ?targetMotifMatch216 faldo:location ?targetMotifMatchRegionMatch217 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101219 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9BU89MF_03101210 . ?targetMotifMatchRegionMatch217 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101218 . ?targetMotifMatchRegionMatchBeginMF_03101218 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101211 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03101219 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9BU89MF_03101208, 1, (STRLEN(?templateMotifCigarQ9BU89MF_03101208) - STRLEN(REPLACE(?templateMotifCigarQ9BU89MF_03101208, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionQ9BU89209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101210, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101210) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9BU89MF_03101210, 1, (STRLEN(?targetMotifMatchCigarQ9BU89MF_03101210) - STRLEN(REPLACE(?targetMotifMatchCigarQ9BU89MF_03101210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) . BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_03101211) - 1) AS ?thisPositionOn80) . BIND(?thisPositionOn80 AS ?thisPositionOn81) . BIND(?this AS ?pfs2t222) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_03101a76')) AS ?annotation76) . BIND(?this AS ?pfs75) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch227 faldo:location ?templateMotifSequenceMatchRegionP47120228 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP47120230 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP47120MF_03101223 . ?templateMotifSequenceMatchRegionP47120228 faldo:begin ?templateMotifSequenceMatchBeginP47120229 . ?templateMotifSequenceMatchBeginP47120229 faldo:position ?templateMotifSequenceMatchBeginPositionP47120224 ; faldo:reference isoform:P47120-1 . ?templateMotifSequenceProfileAlignmentOperationP47120230 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . ?targetMotifMatch231 faldo:location ?targetMotifMatchRegionMatch232 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03101234 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP47120MF_03101225 . ?targetMotifMatchRegionMatch232 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03101233 . ?targetMotifMatchRegionMatchBeginMF_03101233 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03101226 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03101234 edam:has_input signature:MF_03101 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4930 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP47120MF_03101223, 1, (STRLEN(?templateMotifCigarP47120MF_03101223) - STRLEN(REPLACE(?templateMotifCigarP47120MF_03101223, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP47120224) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1235) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP47120MF_03101225, 1, (STRLEN(?targetMotifMatchCigarP47120MF_03101225) - STRLEN(REPLACE(?targetMotifMatchCigarP47120MF_03101225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP47120MF_03101225, 1, (STRLEN(?targetMotifMatchCigarP47120MF_03101225) - STRLEN(REPLACE(?targetMotifMatchCigarP47120MF_03101225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), '')))), '[^-]', ''))) AS ?step2236) . BIND(((?step2236 + ?targetMotifMatchRegionMatchBeginPositionMF_03101226) - 1) AS ?thisPositionOn86) . BIND(?thisPositionOn86 AS ?thisPositionOn87) . BIND(?this AS ?pfs3t237) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb84) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse85) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'M')) . BIND(URI(CONCAT(STR(?this), '#MF_03101a83')) AS ?annotation83) . BIND(?this AS ?pfs82) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag238) . } BIND(IF(BOUND(?tagacetyl), ?caseWithTag238, ?UNBOUND_VARIABLE) AS ?case5) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4751 . BIND(?this AS ?case6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . BIND(?this AS ?case7) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4930 . BIND(?this AS ?case8) . BIND(URI(CONCAT(STR(?this), '#MF_03101a9')) AS ?name9) . BIND(URI(CONCAT(STR(?this), '#MF_03101a10')) AS ?name10) . BIND(URI(CONCAT(STR(?this), '#MF_03101a11')) AS ?name11) . BIND(URI(CONCAT(STR(?this), '#MF_03101a12')) AS ?name12) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7214 . BIND(?this AS ?case13) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:6237 . BIND(?this AS ?case14) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:7214 . })) . BIND(?this AS ?case15) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:4930 . })) . BIND(?this AS ?case16) . BIND(URI(CONCAT(STR(?this), '#MF_03101a17')) AS ?name17) . BIND(URI(CONCAT(STR(?this), '#MF_03101a18')) AS ?name18) . BIND(URI(CONCAT(STR(?this), '#MF_03101a19')) AS ?name19) . } }