CONSTRUCT { _:821046 up:source unirule:MF_03114 . _:821047 up:source unirule:MF_03114 . _:821048 up:source unirule:MF_03114 . _:821049 up:source unirule:MF_03114 . _:821050 up:source unirule:MF_03114 . _:821051 up:source unirule:MF_03114 . _:821052 up:source unirule:MF_03114 . _:821053 up:source unirule:MF_03114 . _:821054 up:source unirule:MF_03114 . _:821055 up:source unirule:MF_03114 . _:821056 up:source unirule:MF_03114 . _:821057 up:source unirule:MF_03114 . _:821058 up:source unirule:MF_03114 . _:821059 up:source unirule:MF_03114 . _:821060 up:source unirule:MF_03114 . _:821061 up:source unirule:MF_03114 . _:821062 up:source unirule:MF_03114 . _:821063 up:source unirule:MF_03114 . _:821064 up:source unirule:MF_03114 . _:821065 up:source unirule:MF_03114 . _:821066 up:source unirule:MF_03114 . _:821067 up:source unirule:MF_03114 . ?this up:annotation ?annotation0 , ?annotation1 , ?annotation4 ; up:classifiedWith GO:0043529 , GO:0045048 , keyword:1133 , keyword:256 , keyword:333 , keyword:472 , keyword:812 , keyword:813 , keyword:931 . ?annotation0 a up:Subunit_Annotation ; rdfs:comment 'Component of the Golgi to ER traffic (GET) complex, which is composed of GET1, GET2 and GET3. Within the complex, GET1 and GET2 form a heterotetramer which is stabilized by phosphatidylinositol binding and which binds to the GET3 homodimer.' . ?annotation1 a up:Subcellular_Location_Annotation . ?annotation1li2 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation1li3 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation4 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the GET2 family.' . ?case5 up:classifiedWith keyword:325 . ?pfs8 up:annotation ?annotation9 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; rdf:type up:Glycosylation_Annotation ; rdfs:comment 'N-linked (GlcNAc...) asparagine' . ?pfsb10 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; rdf:type up:Glycosylation_Annotation ; rdfs:comment 'N-linked (GlcNAc...) asparagine' . ?pfsb16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; rdf:type up:Topological_Domain_Annotation ; rdfs:comment 'Cytoplasmic' . ?pfsb22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; rdf:type up:Topological_Domain_Annotation ; rdfs:comment 'Lumenal' . ?pfsb34 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb40 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; rdf:type up:Topological_Domain_Annotation ; rdfs:comment 'Cytoplasmic' . ?pfsb46 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfs50 up:annotation ?annotation51 . ?annotation51 faldo:begin ?pfsb52 ; faldo:end ?pfse53 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb52 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfse53 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?pfs56 up:annotation ?annotation57 . ?annotation57 faldo:begin ?pfsb58 ; faldo:end ?pfse59 ; rdf:type up:Topological_Domain_Annotation ; rdfs:comment 'Lumenal' . ?pfsb58 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse59 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . _:821068 a rdf:Statement ; up:attribution _:821046 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:821069 a rdf:Statement ; up:attribution _:821047 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:821070 a rdf:Statement ; up:attribution _:821048 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:821071 a rdf:Statement ; up:attribution _:821049 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:256 . _:821072 a rdf:Statement ; up:attribution _:821050 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:931 . _:821073 a rdf:Statement ; up:attribution _:821051 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:333 . _:821074 a rdf:Statement ; up:attribution _:821052 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:821075 a rdf:Statement ; up:attribution _:821053 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:821076 a rdf:Statement ; up:attribution _:821054 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . _:821077 a rdf:Statement ; up:attribution _:821055 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:813 . _:821078 a rdf:Statement ; up:attribution _:821056 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0043529 . _:821079 a rdf:Statement ; up:attribution _:821057 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0045048 . _:821080 a rdf:Statement ; up:attribution _:821058 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:325 . _:821081 a rdf:Statement ; up:source unirule:MF_03114 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:821082 a rdf:Statement ; up:attribution _:821059 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:821083 a rdf:Statement ; up:source unirule:MF_03114 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:821084 a rdf:Statement ; up:attribution _:821060 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:821085 a rdf:Statement ; up:source unirule:MF_03114 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:821086 a rdf:Statement ; up:attribution _:821061 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:821087 a rdf:Statement ; up:source unirule:MF_03114 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:821088 a rdf:Statement ; up:attribution _:821062 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:821089 a rdf:Statement ; up:source unirule:MF_03114 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:821090 a rdf:Statement ; up:attribution _:821063 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:821091 a rdf:Statement ; up:source unirule:MF_03114 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:821092 a rdf:Statement ; up:attribution _:821064 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:821093 a rdf:Statement ; up:source unirule:MF_03114 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:821094 a rdf:Statement ; up:attribution _:821065 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:821095 a rdf:Statement ; up:source unirule:MF_03114 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:821096 a rdf:Statement ; up:attribution _:821066 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:821097 a rdf:Statement ; up:source unirule:MF_03114 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:821098 a rdf:Statement ; up:attribution _:821067 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03114 #Rule MF_03114 Created by:? on:2012-10-26 Modified by:ipedruzz on:2021-02-26 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_03114 . ?thisOrganism rdfs:subClassOf+ taxon:147537 . BIND(URI(CONCAT(STR(?this), '#MF_03114a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_03114a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_03114a4')) AS ?annotation4) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionP4005667 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4005669 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP40056MF_0311462 . ?templateMotifSequenceMatchRegionP4005667 faldo:begin ?templateMotifSequenceMatchBeginP4005668 . ?templateMotifSequenceMatchBeginP4005668 faldo:position ?templateMotifSequenceMatchBeginPositionP4005663 ; faldo:reference isoform:P40056-1 . ?templateMotifSequenceProfileAlignmentOperationP4005669 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . ?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0311473 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP40056MF_0311464 . ?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0311472 . ?targetMotifMatchRegionMatchBeginMF_0311472 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0311465 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0311473 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagglyco) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4930 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40056MF_0311462, 1, (STRLEN(?templateMotifCigarP40056MF_0311462) - STRLEN(REPLACE(?templateMotifCigarP40056MF_0311462, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionP4005663) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40056MF_0311464, 1, (STRLEN(?targetMotifMatchCigarP40056MF_0311464) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_0311464, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40056MF_0311464, 1, (STRLEN(?targetMotifMatchCigarP40056MF_0311464) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_0311464, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) . BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0311465) - 1) AS ?thisPositionOn12) . BIND(?thisPositionOn12 AS ?thisPositionOn13) . BIND(?this AS ?pfs1t76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_03114a9')) AS ?annotation9) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionP4005682 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4005684 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP40056MF_0311477 . ?templateMotifSequenceMatchRegionP4005682 faldo:begin ?templateMotifSequenceMatchBeginP4005683 . ?templateMotifSequenceMatchBeginP4005683 faldo:position ?templateMotifSequenceMatchBeginPositionP4005678 ; faldo:reference isoform:P40056-1 . ?templateMotifSequenceProfileAlignmentOperationP4005684 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . ?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0311488 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP40056MF_0311479 . ?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0311487 . ?targetMotifMatchRegionMatchBeginMF_0311487 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0311480 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0311488 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagglyco) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4930 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40056MF_0311477, 1, (STRLEN(?templateMotifCigarP40056MF_0311477) - STRLEN(REPLACE(?templateMotifCigarP40056MF_0311477, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionP4005678) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40056MF_0311479, 1, (STRLEN(?targetMotifMatchCigarP40056MF_0311479) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_0311479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40056MF_0311479, 1, (STRLEN(?targetMotifMatchCigarP40056MF_0311479) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_0311479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) . BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0311480) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs1t91) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_03114a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionP4005697 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4005699 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP40056MF_0311492 . ?templateMotifSequenceMatchRegionP4005697 faldo:begin ?templateMotifSequenceMatchBeginP4005698 . ?templateMotifSequenceMatchBeginP4005698 faldo:position ?templateMotifSequenceMatchBeginPositionP4005693 ; faldo:reference isoform:P40056-1 . ?templateMotifSequenceProfileAlignmentOperationP4005699 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . ?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03114103 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP40056MF_0311494 . ?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03114102 . ?targetMotifMatchRegionMatchBeginMF_03114102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0311495 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03114103 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . BIND(1 AS ?thisPositionOn24) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40056MF_0311492, 1, (STRLEN(?templateMotifCigarP40056MF_0311492) - STRLEN(REPLACE(?templateMotifCigarP40056MF_0311492, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionP4005693) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40056MF_0311494, 1, (STRLEN(?targetMotifMatchCigarP40056MF_0311494) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_0311494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40056MF_0311494, 1, (STRLEN(?targetMotifMatchCigarP40056MF_0311494) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_0311494, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) . BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0311495) - 1) AS ?thisPositionOn25) . BIND(?this AS ?pfs2t106) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) . FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) . BIND(URI(CONCAT(STR(?this), '#MF_03114a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionP40056112 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40056114 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP40056MF_03114107 . ?templateMotifSequenceMatchRegionP40056112 faldo:begin ?templateMotifSequenceMatchBeginP40056113 . ?templateMotifSequenceMatchBeginP40056113 faldo:position ?templateMotifSequenceMatchBeginPositionP40056108 ; faldo:reference isoform:P40056-1 . ?templateMotifSequenceProfileAlignmentOperationP40056114 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . ?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03114118 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP40056MF_03114109 . ?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03114117 . ?targetMotifMatchRegionMatchBeginMF_03114117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03114110 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03114118 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40056MF_03114107, 1, (STRLEN(?templateMotifCigarP40056MF_03114107) - STRLEN(REPLACE(?templateMotifCigarP40056MF_03114107, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionP40056108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40056MF_03114109, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114109) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40056MF_03114109, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114109) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) . BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_03114110) - 1) AS ?thisPositionOn30) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40056MF_03114107, 1, (STRLEN(?templateMotifCigarP40056MF_03114107) - STRLEN(REPLACE(?templateMotifCigarP40056MF_03114107, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionP40056108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40056MF_03114109, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114109) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40056MF_03114109, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114109) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) . BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_03114110) - 1) AS ?thisPositionOn31) . BIND(?this AS ?pfs2t123) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) . FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) . BIND(URI(CONCAT(STR(?this), '#MF_03114a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionP40056129 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40056131 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP40056MF_03114124 . ?templateMotifSequenceMatchRegionP40056129 faldo:begin ?templateMotifSequenceMatchBeginP40056130 . ?templateMotifSequenceMatchBeginP40056130 faldo:position ?templateMotifSequenceMatchBeginPositionP40056125 ; faldo:reference isoform:P40056-1 . ?templateMotifSequenceProfileAlignmentOperationP40056131 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . ?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03114135 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP40056MF_03114126 . ?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03114134 . ?targetMotifMatchRegionMatchBeginMF_03114134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03114127 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03114135 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40056MF_03114124, 1, (STRLEN(?templateMotifCigarP40056MF_03114124) - STRLEN(REPLACE(?templateMotifCigarP40056MF_03114124, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionP40056125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40056MF_03114126, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114126) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40056MF_03114126, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114126) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) . BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_03114127) - 1) AS ?thisPositionOn36) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40056MF_03114124, 1, (STRLEN(?templateMotifCigarP40056MF_03114124) - STRLEN(REPLACE(?templateMotifCigarP40056MF_03114124, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionP40056125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40056MF_03114126, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114126) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40056MF_03114126, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114126) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) . BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_03114127) - 1) AS ?thisPositionOn37) . BIND(?this AS ?pfs2t140) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) . FILTER ((BOUND(?thisPositionOn36) && BOUND(?thisPositionOn37))) . BIND(URI(CONCAT(STR(?this), '#MF_03114a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionP40056146 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40056148 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP40056MF_03114141 . ?templateMotifSequenceMatchRegionP40056146 faldo:begin ?templateMotifSequenceMatchBeginP40056147 . ?templateMotifSequenceMatchBeginP40056147 faldo:position ?templateMotifSequenceMatchBeginPositionP40056142 ; faldo:reference isoform:P40056-1 . ?templateMotifSequenceProfileAlignmentOperationP40056148 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . ?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03114152 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP40056MF_03114143 . ?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03114151 . ?targetMotifMatchRegionMatchBeginMF_03114151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03114144 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03114152 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40056MF_03114141, 1, (STRLEN(?templateMotifCigarP40056MF_03114141) - STRLEN(REPLACE(?templateMotifCigarP40056MF_03114141, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP40056142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40056MF_03114143, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114143) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40056MF_03114143, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114143) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) . BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_03114144) - 1) AS ?thisPositionOn42) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40056MF_03114141, 1, (STRLEN(?templateMotifCigarP40056MF_03114141) - STRLEN(REPLACE(?templateMotifCigarP40056MF_03114141, CONCAT('^(?:-*[^-]){', STR(((216 - ?templateMotifSequenceMatchBeginPositionP40056142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40056MF_03114143, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114143) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40056MF_03114143, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114143) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) . BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_03114144) - 1) AS ?thisPositionOn43) . BIND(?this AS ?pfs2t157) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) . FILTER ((BOUND(?thisPositionOn42) && BOUND(?thisPositionOn43))) . BIND(URI(CONCAT(STR(?this), '#MF_03114a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionP40056163 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40056165 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP40056MF_03114158 . ?templateMotifSequenceMatchRegionP40056163 faldo:begin ?templateMotifSequenceMatchBeginP40056164 . ?templateMotifSequenceMatchBeginP40056164 faldo:position ?templateMotifSequenceMatchBeginPositionP40056159 ; faldo:reference isoform:P40056-1 . ?templateMotifSequenceProfileAlignmentOperationP40056165 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . ?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03114169 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP40056MF_03114160 . ?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03114168 . ?targetMotifMatchRegionMatchBeginMF_03114168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03114161 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03114169 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40056MF_03114158, 1, (STRLEN(?templateMotifCigarP40056MF_03114158) - STRLEN(REPLACE(?templateMotifCigarP40056MF_03114158, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP40056159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40056MF_03114160, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114160) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40056MF_03114160, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114160) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) . BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_03114161) - 1) AS ?thisPositionOn48) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40056MF_03114158, 1, (STRLEN(?templateMotifCigarP40056MF_03114158) - STRLEN(REPLACE(?templateMotifCigarP40056MF_03114158, CONCAT('^(?:-*[^-]){', STR(((263 - ?templateMotifSequenceMatchBeginPositionP40056159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40056MF_03114160, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114160) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40056MF_03114160, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114160) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) . BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_03114161) - 1) AS ?thisPositionOn49) . BIND(?this AS ?pfs2t174) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) . FILTER ((BOUND(?thisPositionOn48) && BOUND(?thisPositionOn49))) . BIND(URI(CONCAT(STR(?this), '#MF_03114a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionP40056180 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40056182 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP40056MF_03114175 . ?templateMotifSequenceMatchRegionP40056180 faldo:begin ?templateMotifSequenceMatchBeginP40056181 . ?templateMotifSequenceMatchBeginP40056181 faldo:position ?templateMotifSequenceMatchBeginPositionP40056176 ; faldo:reference isoform:P40056-1 . ?templateMotifSequenceProfileAlignmentOperationP40056182 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . ?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03114186 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP40056MF_03114177 . ?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03114185 . ?targetMotifMatchRegionMatchBeginMF_03114185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03114178 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03114186 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40056MF_03114175, 1, (STRLEN(?templateMotifCigarP40056MF_03114175) - STRLEN(REPLACE(?templateMotifCigarP40056MF_03114175, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionP40056176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40056MF_03114177, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114177) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40056MF_03114177, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114177) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) . BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_03114178) - 1) AS ?thisPositionOn54) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40056MF_03114175, 1, (STRLEN(?templateMotifCigarP40056MF_03114175) - STRLEN(REPLACE(?templateMotifCigarP40056MF_03114175, CONCAT('^(?:-*[^-]){', STR(((284 - ?templateMotifSequenceMatchBeginPositionP40056176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40056MF_03114177, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114177) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40056MF_03114177, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114177) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) . BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_03114178) - 1) AS ?thisPositionOn55) . BIND(?this AS ?pfs2t191) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse53) . FILTER ((BOUND(?thisPositionOn54) && BOUND(?thisPositionOn55))) . BIND(URI(CONCAT(STR(?this), '#MF_03114a51')) AS ?annotation51) . BIND(?this AS ?pfs50) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionP40056197 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP40056199 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP40056MF_03114192 . ?templateMotifSequenceMatchRegionP40056197 faldo:begin ?templateMotifSequenceMatchBeginP40056198 . ?templateMotifSequenceMatchBeginP40056198 faldo:position ?templateMotifSequenceMatchBeginPositionP40056193 ; faldo:reference isoform:P40056-1 . ?templateMotifSequenceProfileAlignmentOperationP40056199 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . ?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03114203 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP40056MF_03114194 . ?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03114202 . ?targetMotifMatchRegionMatchBeginMF_03114202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03114195 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03114203 edam:has_input signature:MF_03114 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40056MF_03114192, 1, (STRLEN(?templateMotifCigarP40056MF_03114192) - STRLEN(REPLACE(?templateMotifCigarP40056MF_03114192, CONCAT('^(?:-*[^-]){', STR(((285 - ?templateMotifSequenceMatchBeginPositionP40056193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40056MF_03114194, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114194) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40056MF_03114194, 1, (STRLEN(?targetMotifMatchCigarP40056MF_03114194) - STRLEN(REPLACE(?targetMotifMatchCigarP40056MF_03114194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) . BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_03114195) - 1) AS ?thisPositionOn60) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn61) . BIND(?this AS ?pfs2t206) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb58) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse59) . FILTER ((BOUND(?thisPositionOn60) && BOUND(?thisPositionOn61))) . BIND(URI(CONCAT(STR(?this), '#MF_03114a57')) AS ?annotation57) . BIND(?this AS ?pfs56) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag207) . } BIND(IF(BOUND(?tagglyco), ?caseWithTag207, ?UNBOUND_VARIABLE) AS ?case5) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4930 . BIND(?this AS ?case6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:4930 . })) . BIND(?this AS ?case7) . } }