CONSTRUCT { _:827701 up:source unirule:MF_03124 . _:827702 up:source unirule:MF_03124 . _:827703 up:source unirule:MF_03124 . _:827704 up:source unirule:MF_03124 . _:827705 up:source unirule:MF_03124 . _:827706 up:source unirule:MF_03124 . _:827707 up:source unirule:MF_03124 . _:827708 up:source unirule:MF_03124 . _:827709 up:source unirule:MF_03124 . _:827710 up:source unirule:MF_03124 . _:827711 up:source unirule:MF_03124 . _:827712 up:source unirule:MF_03124 . _:827713 up:source unirule:MF_03124 . _:827714 up:source unirule:MF_03124 . _:827715 up:source unirule:MF_03124 . _:827716 up:source unirule:MF_03124 . _:827717 up:ecName '2.3.1.35' ; up:fullName 'Glutamate N-acetyltransferase' ; up:shortName 'GAT' ; rdf:type up:Structured_Name . _:827718 up:fullName 'Ornithine acetyltransferase' ; up:shortName 'OATase' ; rdf:type up:Structured_Name . _:827719 up:fullName 'Ornithine transacetylase' ; rdf:type up:Structured_Name . _:827720 up:source unirule:MF_03124 . _:827721 up:ecName '2.3.1.1' ; up:fullName 'Amino-acid acetyltransferase' ; rdf:type up:Structured_Name . _:827722 up:fullName 'N-acetylglutamate synthase' ; up:shortName 'AGS' ; rdf:type up:Structured_Name . _:827723 up:source unirule:MF_03124 . _:827724 up:fullName 'Arginine biosynthesis bifunctional protein ArgJ alpha chain' ; rdf:type up:Structured_Name . _:827725 up:source unirule:MF_03124 . _:827726 up:fullName 'Arginine biosynthesis bifunctional protein ArgJ beta chain' ; rdf:type up:Structured_Name . _:827727 up:source unirule:MF_03124 . _:827728 up:ecName '2.3.1.35' ; up:fullName 'Glutamate N-acetyltransferase' ; up:shortName 'GAT' ; rdf:type up:Structured_Name . _:827729 up:fullName 'Ornithine acetyltransferase' ; up:shortName 'OATase' ; rdf:type up:Structured_Name . _:827730 up:fullName 'Ornithine transacetylase' ; rdf:type up:Structured_Name . _:827731 up:source unirule:MF_03124 . _:827732 up:ecName '2.3.1.1' ; up:fullName 'Amino-acid acetyltransferase' ; rdf:type up:Structured_Name . _:827733 up:fullName 'N-acetylglutamate synthase' ; up:shortName 'AGS' ; rdf:type up:Structured_Name . _:827734 up:source unirule:MF_03124 . _:827735 up:fullName 'Arginine biosynthesis bifunctional protein ArgJ alpha chain' ; rdf:type up:Structured_Name . _:827736 up:source unirule:MF_03124 . _:827737 up:fullName 'Arginine biosynthesis bifunctional protein ArgJ beta chain' ; rdf:type up:Structured_Name . _:827738 up:source unirule:MF_03124 . _:827739 up:source unirule:MF_03124 . _:827740 up:source unirule:MF_03124 . _:827741 up:source unirule:MF_03124 . _:827742 up:source unirule:MF_03124 . _:827743 up:source unirule:MF_03124 . _:827744 up:source unirule:MF_03124 . _:827745 up:source unirule:MF_03124 . _:827746 up:source unirule:MF_03124 . _:827747 up:source unirule:MF_03124 . _:827748 up:source unirule:MF_03124 . _:827749 up:source unirule:MF_03124 . _:827750 up:source unirule:MF_03124 . _:827751 up:source unirule:MF_03124 . _:827752 up:source unirule:MF_03124 . _:827753 up:source unirule:MF_03124 . _:827754 up:source unirule:MF_03124 . _:827755 up:source unirule:MF_03124 . _:827756 up:source unirule:MF_03124 . _:827757 up:source unirule:MF_03124 . _:827758 up:source unirule:MF_03124 . ?this up:annotation ?annotation0 , ?annotation1 , ?annotation3 , ?annotation5 , ?annotation6 , ?annotation7 , ?annotation8 ; up:classifiedWith GO:0004042 , GO:0004358 , GO:0006526 , keyword:12 , keyword:28 , keyword:511 , keyword:55 , keyword:68 , keyword:808 ; up:component ?namedpart11 , ?namedpart12 , ?namedpart15 , ?namedpart16 ; up:domain ?namedpart9 , ?namedpart10 , ?namedpart13 , ?namedpart14 . ?annotation0 a up:Function_Annotation ; rdfs:comment 'Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.' . ?annotation1 up:activity ?activity2 ; rdf:type up:Catalytic_Activity_Annotation . ?activity2 up:catalyticActivity <http://rdf.rhea-db.org/15349>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.3.1.35>. ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/24292>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.3.1.1>. ?annotation5 a up:Pathway_Annotation ; rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis; L-ornithine and N-acetyl-L-glutamate from L-glutamate and N(2)-acetyl-L-ornithine (cyclic): step 1/1.' . ?annotation6 a up:Pathway_Annotation ; rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 1/4.' . ?annotation7 a up:Subunit_Annotation ; rdfs:comment 'Heterodimer of an alpha and a beta chain.' . ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the ArgJ family.' . ?namedpart9 up:alternativeName _:827718 , _:827719 ; up:recommendedName _:827717 . ?namedpart10 up:alternativeName _:827722 ; up:recommendedName _:827721 . ?namedpart11 up:recommendedName _:827724 . ?namedpart12 up:recommendedName _:827726 . ?namedpart13 up:alternativeName _:827729 , _:827730 ; up:recommendedName _:827728 . ?namedpart14 up:alternativeName _:827733 ; up:recommendedName _:827732 . ?namedpart15 up:recommendedName _:827735 . ?namedpart16 up:recommendedName _:827737 . ?case17 up:classifiedWith GO:0009507 , keyword:150 , keyword:934 . ?case18 up:classifiedWith keyword:809 . ?case19 up:classifiedWith GO:0005759 , keyword:496 . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; rdf:type up:Chain_Annotation ; rdfs:comment 'Arginine biosynthesis bifunctional protein ArgJ beta chain' . ?pfsb22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; rdf:type up:Site_Annotation ; rdfs:comment 'Cleavage; by autolysis' . ?pfsb28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Nucleophile' . ?pfsb34 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; up:ligand ?ligand42 ; rdf:type up:Binding_Site_Annotation . ?pfsb40 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?ligand42 rdfs:subClassOf ?molecule43 . ?molecule43 rdfs:label 'substrate' . ?pfs46 up:annotation ?annotation47 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; up:ligand ?ligand50 ; rdf:type up:Binding_Site_Annotation . ?pfsb48 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand50 rdfs:subClassOf ?molecule51 . ?molecule51 rdfs:label 'substrate' . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf ?molecule59 . ?molecule59 rdfs:label 'substrate' . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; up:ligand ?ligand66 ; rdf:type up:Binding_Site_Annotation . ?pfsb64 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?ligand66 rdfs:subClassOf ?molecule67 . ?molecule67 rdfs:label 'substrate' . ?pfs70 up:annotation ?annotation71 . ?annotation71 faldo:begin ?pfsb72 ; faldo:end ?pfse73 ; up:ligand ?ligand74 ; rdf:type up:Binding_Site_Annotation . ?pfsb72 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?pfse73 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?ligand74 rdfs:subClassOf ?molecule75 . ?molecule75 rdfs:label 'substrate' . ?pfs78 up:annotation ?annotation79 . ?annotation79 faldo:begin ?pfsb80 ; faldo:end ?pfse81 ; up:ligand ?ligand82 ; rdf:type up:Binding_Site_Annotation . ?pfsb80 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?pfse81 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?ligand82 rdfs:subClassOf ?molecule83 . ?molecule83 rdfs:label 'substrate' . ?pfs86 up:annotation ?annotation87 . ?annotation87 faldo:begin ?pfsb88 ; faldo:end ?pfse89 ; rdf:type up:Site_Annotation ; rdfs:comment 'Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole' . ?pfsb88 faldo:position ?thisPositionOn90 ; rdf:type faldo:ExactPosition . ?pfse89 faldo:position ?thisPositionOn91 ; rdf:type faldo:ExactPosition . ?pfs92 up:annotation ?annotation93 . ?annotation93 faldo:begin ?pfsb94 ; faldo:end ?pfse95 ; rdf:type up:Site_Annotation ; rdfs:comment 'Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole' . ?pfsb94 faldo:position ?thisPositionOn96 ; rdf:type faldo:ExactPosition . ?pfse95 faldo:position ?thisPositionOn97 ; rdf:type faldo:ExactPosition . ?pfs98 up:annotation ?annotation99 . ?annotation99 faldo:begin ?pfsb100 ; faldo:end ?pfse101 ; rdf:type up:Chain_Annotation ; rdfs:comment 'Arginine biosynthesis bifunctional protein ArgJ alpha chain' . ?pfsb100 faldo:position ?thisPositionOn102 ; rdf:type faldo:ExactPosition . ?pfse101 faldo:position ?thisPositionOn103 ; rdf:type faldo:ExactPosition . ?pfs104 up:annotation ?annotation105 . ?annotation105 faldo:begin ?pfsb106 ; faldo:end ?pfse107 ; rdf:type up:Transit_Peptide_Annotation ; rdfs:comment 'Mitochondrion' . ?pfsb106 faldo:position ?thisPositionOn108 ; rdf:type faldo:ExactPosition . ?pfse107 faldo:position ?thisPositionOn109 ; rdf:type faldo:ExactPosition . ?pfs110 up:annotation ?annotation111 . ?annotation111 faldo:begin ?pfsb112 ; faldo:end ?pfse113 ; rdf:type up:Chain_Annotation ; rdfs:comment 'Arginine biosynthesis bifunctional protein ArgJ alpha chain' . ?pfsb112 faldo:position ?thisPositionOn114 ; rdf:type faldo:ExactPosition . ?pfse113 faldo:position ?thisPositionOn115 ; rdf:type faldo:ExactPosition . _:827759 a rdf:Statement ; up:attribution _:827701 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:827760 a rdf:Statement ; up:attribution _:827702 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:827761 a rdf:Statement ; up:attribution _:827703 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:827762 a rdf:Statement ; up:attribution _:827704 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:827763 a rdf:Statement ; up:attribution _:827705 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:827764 a rdf:Statement ; up:attribution _:827706 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:827765 a rdf:Statement ; up:attribution _:827707 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:827766 a rdf:Statement ; up:attribution _:827708 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:12 . _:827767 a rdf:Statement ; up:attribution _:827709 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:28 . _:827768 a rdf:Statement ; up:attribution _:827710 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:55 . _:827769 a rdf:Statement ; up:attribution _:827711 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:68 . _:827770 a rdf:Statement ; up:attribution _:827712 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:511 . _:827771 a rdf:Statement ; up:attribution _:827713 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:827772 a rdf:Statement ; up:attribution _:827714 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006526 . _:827773 a rdf:Statement ; up:attribution _:827715 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004358 . _:827774 a rdf:Statement ; up:attribution _:827716 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004042 . _:827775 a rdf:Statement ; up:attribution _:827720 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart9 . _:827776 a rdf:Statement ; up:attribution _:827723 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart10 . _:827777 a rdf:Statement ; up:attribution _:827725 ; rdf:subject ?this ; rdf:predicate up:component ; rdf:object ?namedpart11 . _:827778 a rdf:Statement ; up:attribution _:827727 ; rdf:subject ?this ; rdf:predicate up:component ; rdf:object ?namedpart12 . _:827779 a rdf:Statement ; up:attribution _:827731 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart13 . _:827780 a rdf:Statement ; up:attribution _:827734 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart14 . _:827781 a rdf:Statement ; up:attribution _:827736 ; rdf:subject ?this ; rdf:predicate up:component ; rdf:object ?namedpart15 . _:827782 a rdf:Statement ; up:attribution _:827738 ; rdf:subject ?this ; rdf:predicate up:component ; rdf:object ?namedpart16 . _:827783 a rdf:Statement ; up:attribution _:827739 ; rdf:subject ?case17 ; rdf:predicate up:classifiedWith ; rdf:object keyword:150 . _:827784 a rdf:Statement ; up:attribution _:827740 ; rdf:subject ?case17 ; rdf:predicate up:classifiedWith ; rdf:object keyword:934 . _:827785 a rdf:Statement ; up:attribution _:827741 ; rdf:subject ?case17 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009507 . _:827786 a rdf:Statement ; up:attribution _:827742 ; rdf:subject ?case18 ; rdf:predicate up:classifiedWith ; rdf:object keyword:809 . _:827787 a rdf:Statement ; up:attribution _:827743 ; rdf:subject ?case19 ; rdf:predicate up:classifiedWith ; rdf:object keyword:496 . _:827788 a rdf:Statement ; up:attribution _:827744 ; rdf:subject ?case19 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005759 . _:827789 a rdf:Statement ; up:source unirule:MF_03124 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:827790 a rdf:Statement ; up:attribution _:827745 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:827791 a rdf:Statement ; up:source unirule:MF_03124 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:827792 a rdf:Statement ; up:attribution _:827746 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:827793 a rdf:Statement ; up:source unirule:MF_03124 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:827794 a rdf:Statement ; up:attribution _:827747 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:827795 a rdf:Statement ; up:source unirule:MF_03124 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:827796 a rdf:Statement ; up:attribution _:827748 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:827797 a rdf:Statement ; up:source unirule:MF_03124 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:827798 a rdf:Statement ; up:attribution _:827749 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:827799 a rdf:Statement ; up:source unirule:MF_03124 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:827800 a rdf:Statement ; up:attribution _:827750 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:827801 a rdf:Statement ; up:source unirule:MF_03124 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:827802 a rdf:Statement ; up:attribution _:827751 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:827803 a rdf:Statement ; up:source unirule:MF_03124 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:827804 a rdf:Statement ; up:attribution _:827752 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:827805 a rdf:Statement ; up:source unirule:MF_03124 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:827806 a rdf:Statement ; up:attribution _:827753 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:827807 a rdf:Statement ; up:source unirule:MF_03124 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:827808 a rdf:Statement ; up:attribution _:827754 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:827809 a rdf:Statement ; up:source unirule:MF_03124 ; rdf:subject ?pfs92 ; rdf:predicate up:annotation ; rdf:object ?annotation93 . _:827810 a rdf:Statement ; up:attribution _:827755 ; rdf:subject ?pfs92 ; rdf:predicate up:annotation ; rdf:object ?annotation93 . _:827811 a rdf:Statement ; up:source unirule:MF_03124 ; rdf:subject ?pfs98 ; rdf:predicate up:annotation ; rdf:object ?annotation99 . _:827812 a rdf:Statement ; up:attribution _:827756 ; rdf:subject ?pfs98 ; rdf:predicate up:annotation ; rdf:object ?annotation99 . _:827813 a rdf:Statement ; up:source unirule:MF_03124 ; rdf:subject ?pfs104 ; rdf:predicate up:annotation ; rdf:object ?annotation105 . _:827814 a rdf:Statement ; up:attribution _:827757 ; rdf:subject ?pfs104 ; rdf:predicate up:annotation ; rdf:object ?annotation105 . _:827815 a rdf:Statement ; up:source unirule:MF_03124 ; rdf:subject ?pfs110 ; rdf:predicate up:annotation ; rdf:object ?annotation111 . _:827816 a rdf:Statement ; up:attribution _:827758 ; rdf:subject ?pfs110 ; rdf:predicate up:annotation ; rdf:object ?annotation111 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03124 #Rule MF_03124 Created by:? on:2012-08-22 Modified by:Catherine Rivoire on:2025-06-12 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01106 . ?thisOrganism rdfs:subClassOf+ taxon:2759 . BIND(URI(CONCAT(STR(?this), '#MF_03124a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_03124a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_03124a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_03124a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_03124a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_03124a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_03124a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_03124a9')) AS ?namedpart9) . BIND(URI(CONCAT(STR(?this), '#MF_03124a10')) AS ?namedpart10) . BIND(URI(CONCAT(STR(?this), '#MF_03124a11')) AS ?namedpart11) . BIND(URI(CONCAT(STR(?this), '#MF_03124a12')) AS ?namedpart12) . BIND(URI(CONCAT(STR(?this), '#MF_03124a13')) AS ?namedpart13) . BIND(URI(CONCAT(STR(?this), '#MF_03124a14')) AS ?namedpart14) . BIND(URI(CONCAT(STR(?this), '#MF_03124a15')) AS ?namedpart15) . BIND(URI(CONCAT(STR(?this), '#MF_03124a16')) AS ?namedpart16) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionQ04728121 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ04728123 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ04728MF_01106116 . ?templateMotifSequenceMatchRegionQ04728121 faldo:begin ?templateMotifSequenceMatchBeginQ04728122 . ?templateMotifSequenceMatchBeginQ04728122 faldo:position ?templateMotifSequenceMatchBeginPositionQ04728117 ; faldo:reference isoform:Q04728-1 . ?templateMotifSequenceProfileAlignmentOperationQ04728123 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106127 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ04728MF_01106118 . ?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106126 . ?targetMotifMatchRegionMatchBeginMF_01106126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106119 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106127 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ04728MF_01106116, 1, (STRLEN(?templateMotifCigarQ04728MF_01106116) - STRLEN(REPLACE(?templateMotifCigarQ04728MF_01106116, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionQ04728117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ04728MF_01106118, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106118) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ04728MF_01106118, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106118) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) . BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_01106119) - 1) AS ?thisPositionOn24) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn25) . BIND(?this AS ?pfs1t130) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) . FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) . BIND(URI(CONCAT(STR(?this), '#MF_03124a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionQ04728136 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ04728138 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ04728MF_01106131 . ?templateMotifSequenceMatchRegionQ04728136 faldo:begin ?templateMotifSequenceMatchBeginQ04728137 . ?templateMotifSequenceMatchBeginQ04728137 faldo:position ?templateMotifSequenceMatchBeginPositionQ04728132 ; faldo:reference isoform:Q04728-1 . ?templateMotifSequenceProfileAlignmentOperationQ04728138 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106142 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ04728MF_01106133 . ?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106141 . ?targetMotifMatchRegionMatchBeginMF_01106141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106134 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106142 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ04728MF_01106131, 1, (STRLEN(?templateMotifCigarQ04728MF_01106131) - STRLEN(REPLACE(?templateMotifCigarQ04728MF_01106131, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionQ04728132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ04728MF_01106133, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106133) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ04728MF_01106133, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106133) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) . BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_01106134) - 1) AS ?thisPositionOn30) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ04728MF_01106131, 1, (STRLEN(?templateMotifCigarQ04728MF_01106131) - STRLEN(REPLACE(?templateMotifCigarQ04728MF_01106131, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionQ04728132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ04728MF_01106133, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106133) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ04728MF_01106133, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106133) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) . BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_01106134) - 1) AS ?thisPositionOn31) . BIND(?this AS ?pfs1t147) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, (?thisPositionOn31 - ?thisPositionOn30)) = 'AT')) . BIND(URI(CONCAT(STR(?this), '#MF_03124a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3153 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3155 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106148 . ?templateMotifSequenceMatchRegionP9WPZ3153 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3154 . ?templateMotifSequenceMatchBeginP9WPZ3154 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3149 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3155 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106159 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106150 . ?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106158 . ?targetMotifMatchRegionMatchBeginMF_01106158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106151 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106159 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106148, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106148) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106148, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP9WPZ3149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106150, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106150) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106150, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106150) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) . BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_01106151) - 1) AS ?thisPositionOn36) . BIND(?thisPositionOn36 AS ?thisPositionOn37) . BIND(?this AS ?pfs2t162) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) . FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_03124a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3168 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3170 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106163 . ?templateMotifSequenceMatchRegionP9WPZ3168 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3169 . ?templateMotifSequenceMatchBeginP9WPZ3169 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3164 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3170 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106174 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106165 . ?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106173 . ?targetMotifMatchRegionMatchBeginMF_01106173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106166 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106174 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106163, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106163) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106163, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionP9WPZ3164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106165, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106165) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106165, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106165) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) . BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_01106166) - 1) AS ?thisPositionOn44) . BIND(?thisPositionOn44 AS ?thisPositionOn45) . BIND(?this AS ?pfs2t177) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse41) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_03124a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3183 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3185 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106178 . ?templateMotifSequenceMatchRegionP9WPZ3183 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3184 . ?templateMotifSequenceMatchBeginP9WPZ3184 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3179 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3185 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106189 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106180 . ?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106188 . ?targetMotifMatchRegionMatchBeginMF_01106188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106181 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106189 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106178, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106178) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106178, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionP9WPZ3179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106180, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106180) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106180, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106180) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) . BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_01106181) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs2t192) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse49) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_03124a47')) AS ?annotation47) . BIND(?this AS ?pfs46) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch197 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3198 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3200 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106193 . ?templateMotifSequenceMatchRegionP9WPZ3198 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3199 . ?templateMotifSequenceMatchBeginP9WPZ3199 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3194 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3200 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch201 faldo:location ?targetMotifMatchRegionMatch202 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106204 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106195 . ?targetMotifMatchRegionMatch202 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106203 . ?targetMotifMatchRegionMatchBeginMF_01106203 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106196 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106204 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106193, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106193) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106193, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP9WPZ3194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106195, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106195) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106195, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106195) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) . BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_01106196) - 1) AS ?thisPositionOn60) . BIND(?thisPositionOn60 AS ?thisPositionOn61) . BIND(?this AS ?pfs2t207) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse57) . FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_03124a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch212 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3213 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3215 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106208 . ?templateMotifSequenceMatchRegionP9WPZ3213 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3214 . ?templateMotifSequenceMatchBeginP9WPZ3214 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3209 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3215 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch216 faldo:location ?targetMotifMatchRegionMatch217 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106219 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106210 . ?targetMotifMatchRegionMatch217 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106218 . ?targetMotifMatchRegionMatchBeginMF_01106218 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106211 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106219 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106208, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106208) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106208, CONCAT('^(?:-*[^-]){', STR(((280 - ?templateMotifSequenceMatchBeginPositionP9WPZ3209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106210, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106210) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106210, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106210) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) . BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_01106211) - 1) AS ?thisPositionOn68) . BIND(?thisPositionOn68 AS ?thisPositionOn69) . BIND(?this AS ?pfs2t222) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse65) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_03124a63')) AS ?annotation63) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch227 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3228 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3230 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106223 . ?templateMotifSequenceMatchRegionP9WPZ3228 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3229 . ?templateMotifSequenceMatchBeginP9WPZ3229 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3224 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3230 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch231 faldo:location ?targetMotifMatchRegionMatch232 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106234 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106225 . ?targetMotifMatchRegionMatch232 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106233 . ?targetMotifMatchRegionMatchBeginMF_01106233 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106226 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106234 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106223, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106223) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106223, CONCAT('^(?:-*[^-]){', STR(((399 - ?templateMotifSequenceMatchBeginPositionP9WPZ3224) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1235) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106225, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106225) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106225, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106225) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), '')))), '[^-]', ''))) AS ?step2236) . BIND(((?step2236 + ?targetMotifMatchRegionMatchBeginPositionMF_01106226) - 1) AS ?thisPositionOn76) . BIND(?thisPositionOn76 AS ?thisPositionOn77) . BIND(?this AS ?pfs2t237) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb72) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse73) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_03124a71')) AS ?annotation71) . BIND(?this AS ?pfs70) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch242 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3243 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3245 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106238 . ?templateMotifSequenceMatchRegionP9WPZ3243 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3244 . ?templateMotifSequenceMatchBeginP9WPZ3244 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3239 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3245 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch246 faldo:location ?targetMotifMatchRegionMatch247 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106249 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106240 . ?targetMotifMatchRegionMatch247 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106248 . ?targetMotifMatchRegionMatchBeginMF_01106248 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106241 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106249 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106238, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106238) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106238, CONCAT('^(?:-*[^-]){', STR(((404 - ?templateMotifSequenceMatchBeginPositionP9WPZ3239) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1250) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106240, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106240) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106240, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106240) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), '')))), '[^-]', ''))) AS ?step2251) . BIND(((?step2251 + ?targetMotifMatchRegionMatchBeginPositionMF_01106241) - 1) AS ?thisPositionOn84) . BIND(?thisPositionOn84 AS ?thisPositionOn85) . BIND(?this AS ?pfs2t252) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb80) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse81) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_03124a79')) AS ?annotation79) . BIND(?this AS ?pfs78) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch257 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3258 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3260 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106253 . ?templateMotifSequenceMatchRegionP9WPZ3258 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3259 . ?templateMotifSequenceMatchBeginP9WPZ3259 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3254 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3260 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch261 faldo:location ?targetMotifMatchRegionMatch262 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106264 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106255 . ?targetMotifMatchRegionMatch262 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106263 . ?targetMotifMatchRegionMatchBeginMF_01106263 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106256 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106264 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106253, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106253) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106253, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionP9WPZ3254) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1265) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106255, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106255) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106255, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106255) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), '')))), '[^-]', ''))) AS ?step2266) . BIND(((?step2266 + ?targetMotifMatchRegionMatchBeginPositionMF_01106256) - 1) AS ?thisPositionOn90) . BIND(?thisPositionOn90 AS ?thisPositionOn91) . BIND(?this AS ?pfs2t267) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb88) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse89) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn90, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_03124a87')) AS ?annotation87) . BIND(?this AS ?pfs86) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch272 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3273 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3275 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WPZ3MF_01106268 . ?templateMotifSequenceMatchRegionP9WPZ3273 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3274 . ?templateMotifSequenceMatchBeginP9WPZ3274 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3269 ; faldo:reference isoform:P9WPZ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WPZ3275 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch276 faldo:location ?targetMotifMatchRegionMatch277 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106279 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106270 . ?targetMotifMatchRegionMatch277 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106278 . ?targetMotifMatchRegionMatchBeginMF_01106278 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106271 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106279 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106268, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106268) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106268, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionP9WPZ3269) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1280) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106270, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106270) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106270, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106270) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), '')))), '[^-]', ''))) AS ?step2281) . BIND(((?step2281 + ?targetMotifMatchRegionMatchBeginPositionMF_01106271) - 1) AS ?thisPositionOn96) . BIND(?thisPositionOn96 AS ?thisPositionOn97) . BIND(?this AS ?pfs2t282) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb94) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse95) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_03124a93')) AS ?annotation93) . BIND(?this AS ?pfs92) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch287 faldo:location ?templateMotifSequenceMatchRegionQ04728288 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ04728290 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ04728MF_01106283 . ?templateMotifSequenceMatchRegionQ04728288 faldo:begin ?templateMotifSequenceMatchBeginQ04728289 . ?templateMotifSequenceMatchBeginQ04728289 faldo:position ?templateMotifSequenceMatchBeginPositionQ04728284 ; faldo:reference isoform:Q04728-1 . ?templateMotifSequenceProfileAlignmentOperationQ04728290 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch291 faldo:location ?targetMotifMatchRegionMatch292 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106294 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ04728MF_01106285 . ?targetMotifMatchRegionMatch292 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106293 . ?targetMotifMatchRegionMatchBeginMF_01106293 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106286 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106294 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:4930 . })) . BIND(1 AS ?thisPositionOn102) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ04728MF_01106283, 1, (STRLEN(?templateMotifCigarQ04728MF_01106283) - STRLEN(REPLACE(?templateMotifCigarQ04728MF_01106283, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionQ04728284) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1295) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ04728MF_01106285, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106285) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ04728MF_01106285, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106285) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), '')))), '[^-]', ''))) AS ?step2296) . BIND(((?step2296 + ?targetMotifMatchRegionMatchBeginPositionMF_01106286) - 1) AS ?thisPositionOn103) . BIND(?this AS ?pfs3t297) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb100) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse101) . FILTER ((BOUND(?thisPositionOn102) && BOUND(?thisPositionOn103))) . BIND(URI(CONCAT(STR(?this), '#MF_03124a99')) AS ?annotation99) . BIND(?this AS ?pfs98) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch302 faldo:location ?templateMotifSequenceMatchRegionQ04728303 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ04728305 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ04728MF_01106298 . ?templateMotifSequenceMatchRegionQ04728303 faldo:begin ?templateMotifSequenceMatchBeginQ04728304 . ?templateMotifSequenceMatchBeginQ04728304 faldo:position ?templateMotifSequenceMatchBeginPositionQ04728299 ; faldo:reference isoform:Q04728-1 . ?templateMotifSequenceProfileAlignmentOperationQ04728305 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch306 faldo:location ?targetMotifMatchRegionMatch307 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106309 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ04728MF_01106300 . ?targetMotifMatchRegionMatch307 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106308 . ?targetMotifMatchRegionMatchBeginMF_01106308 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106301 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106309 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4930 . BIND(1 AS ?thisPositionOn108) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ04728MF_01106298, 1, (STRLEN(?templateMotifCigarQ04728MF_01106298) - STRLEN(REPLACE(?templateMotifCigarQ04728MF_01106298, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionQ04728299) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1310) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ04728MF_01106300, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106300) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ04728MF_01106300, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106300) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), '')))), '[^-]', ''))) AS ?step2311) . BIND(((?step2311 + ?targetMotifMatchRegionMatchBeginPositionMF_01106301) - 1) AS ?thisPositionOn109) . BIND(?this AS ?pfs4t312) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfsb106) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfse107) . FILTER ((BOUND(?thisPositionOn108) && BOUND(?thisPositionOn109))) . BIND(URI(CONCAT(STR(?this), '#MF_03124a105')) AS ?annotation105) . BIND(?this AS ?pfs104) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch317 faldo:location ?templateMotifSequenceMatchRegionQ04728318 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ04728320 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ04728MF_01106313 . ?templateMotifSequenceMatchRegionQ04728318 faldo:begin ?templateMotifSequenceMatchBeginQ04728319 . ?templateMotifSequenceMatchBeginQ04728319 faldo:position ?templateMotifSequenceMatchBeginPositionQ04728314 ; faldo:reference isoform:Q04728-1 . ?templateMotifSequenceProfileAlignmentOperationQ04728320 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?targetMotifMatch321 faldo:location ?targetMotifMatchRegionMatch322 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106324 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ04728MF_01106315 . ?targetMotifMatchRegionMatch322 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106323 . ?targetMotifMatchRegionMatchBeginMF_01106323 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106316 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01106324 edam:has_input signature:MF_01106 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4930 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ04728MF_01106313, 1, (STRLEN(?templateMotifCigarQ04728MF_01106313) - STRLEN(REPLACE(?templateMotifCigarQ04728MF_01106313, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionQ04728314) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1325) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ04728MF_01106315, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106315) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ04728MF_01106315, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106315) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), '')))), '[^-]', ''))) AS ?step2326) . BIND(((?step2326 + ?targetMotifMatchRegionMatchBeginPositionMF_01106316) - 1) AS ?thisPositionOn114) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ04728MF_01106313, 1, (STRLEN(?templateMotifCigarQ04728MF_01106313) - STRLEN(REPLACE(?templateMotifCigarQ04728MF_01106313, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionQ04728314) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ04728MF_01106315, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106315) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ04728MF_01106315, 1, (STRLEN(?targetMotifMatchCigarQ04728MF_01106315) - STRLEN(REPLACE(?targetMotifMatchCigarQ04728MF_01106315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) . BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_01106316) - 1) AS ?thisPositionOn115) . BIND(?this AS ?pfs4t329) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfsb112) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfse113) . FILTER ((BOUND(?thisPositionOn114) && BOUND(?thisPositionOn115))) . BIND(URI(CONCAT(STR(?this), '#MF_03124a111')) AS ?annotation111) . BIND(?this AS ?pfs110) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33090 . BIND(?this AS ?case17) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4930 . BIND(?this AS ?case18) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33090 . })) . BIND(?this AS ?case19) . } }