CONSTRUCT { _:865015 up:source unirule:MF_03180 . _:865016 up:source unirule:MF_03180 . _:865017 up:source unirule:MF_03180 . _:865018 up:source unirule:MF_03180 . _:865019 up:source unirule:MF_03180 . _:865020 up:source unirule:MF_03180 . _:865021 up:source unirule:MF_03180 . _:865022 up:source unirule:MF_03180 . _:865023 up:source unirule:MF_03180 . _:865024 up:source unirule:MF_03180 . _:865025 up:source unirule:MF_03180 . _:865026 up:source unirule:MF_03180 . _:865027 up:source unirule:MF_03180 . _:865028 up:source unirule:MF_03180 . _:865029 up:source unirule:MF_03180 . _:865030 up:source unirule:MF_03180 . _:865031 up:source unirule:MF_03180 . _:865032 up:source unirule:MF_03180 . _:865033 up:source unirule:MF_03180 . _:865034 up:source unirule:MF_03180 . _:865035 up:source unirule:MF_03180 . _:865036 up:source unirule:MF_03180 . _:865037 up:source unirule:MF_03180 . _:865038 up:source unirule:MF_03180 . _:865039 up:source unirule:MF_03180 . _:865040 up:source unirule:MF_03180 . _:865041 up:source unirule:MF_03180 . _:865042 up:source unirule:MF_03180 . _:865043 up:source unirule:MF_03180 . _:865044 up:source unirule:MF_03180 . _:865045 up:source unirule:MF_03180 . _:865046 up:source unirule:MF_03180 . _:865047 up:source unirule:MF_03180 . _:865048 up:source unirule:MF_03180 . _:865049 up:source unirule:MF_03180 . _:865050 up:source unirule:MF_03180 . _:865051 up:source unirule:MF_03180 . ?this up:annotation ?annotation0 , ?annotation2 , ?annotation3 , ?annotation6 ; up:classifiedWith GO:0002949 , GO:0005737 , GO:0016747 , keyword:12 , keyword:479 , keyword:539 , keyword:808 , keyword:819 , keyword:963 . ?annotation0 up:activity ?activity1 ; rdf:type up:Catalytic_Activity_Annotation . ?activity1 up:catalyticActivity <http://rdf.rhea-db.org/37059>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.3.1.234>. ?annotation2 up:cofactor chebi:60240 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 divalent metal cation per subunit.' . ?annotation3 a up:Subcellular_Location_Annotation . ?annotation3li4 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation3li5 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the KAE1 / TsaD family.' . ?case7 up:alternativeName ?name9 , ?name10 , ?name12 ; up:classifiedWith keyword:10 , keyword:804 , keyword:805 ; up:recommendedName ?name8 . ?name8 up:ecName '2.3.1.234' ; up:fullName 'tRNA N6-adenosine threonylcarbamoyltransferase' ; rdf:type up:Structured_Name . ?name9 up:fullName 'N6-L-threonylcarbamoyladenine synthase' ; up:shortName 't(6)A synthase' ; rdf:type up:Structured_Name . ?name10 up:fullName ?nameValue11 ; rdf:type up:Structured_Name . ?name12 up:fullName ?nameValue13 ; rdf:type up:Structured_Name . ?case14 up:alternativeName ?name16 , ?name17 , ?name18 , ?name20 ; up:recommendedName ?name15 . ?name15 up:ecName '2.3.1.234' ; up:fullName 'tRNA N6-adenosine threonylcarbamoyltransferase' ; rdf:type up:Structured_Name . ?name16 up:fullName 'N6-L-threonylcarbamoyladenine synthase' ; up:shortName 't(6)A synthase' ; rdf:type up:Structured_Name . ?name17 up:fullName 'O-sialoglycoprotein endopeptidase' ; rdf:type up:Structured_Name . ?name18 up:fullName ?nameValue19 ; rdf:type up:Structured_Name . ?name20 up:fullName ?nameValue21 ; rdf:type up:Structured_Name . ?case24 up:alternativeName ?name26 , ?name28 ; up:recommendedName ?name25 . ?name25 up:ecName '2.3.1.234' ; up:fullName 'Probable tRNA N6-adenosine threonylcarbamoyltransferase' ; rdf:type up:Structured_Name . ?name26 up:fullName ?nameValue27 ; rdf:type up:Structured_Name . ?name28 up:fullName ?nameValue29 ; rdf:type up:Structured_Name . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf ?molecule35 . ?molecule35 rdfs:label 'substrate' . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; up:ligand ?ligand42 ; rdf:type up:Binding_Site_Annotation . ?pfsb40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?ligand42 rdfs:subClassOf chebi:60240 . ?pfs45 up:annotation ?annotation46 . ?annotation46 faldo:begin ?pfsb47 ; faldo:end ?pfse48 ; up:ligand ?ligand49 ; rdf:type up:Binding_Site_Annotation . ?pfsb47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfse48 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?ligand49 rdfs:subClassOf chebi:60240 . ?pfs52 up:annotation ?annotation53 . ?annotation53 faldo:begin ?pfsb54 ; faldo:end ?pfse55 ; up:ligand ?ligand56 ; rdf:type up:Binding_Site_Annotation . ?pfsb54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfse55 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?ligand56 rdfs:subClassOf chebi:60240 . ?pfs59 up:annotation ?annotation60 . ?annotation60 faldo:begin ?pfsb61 ; faldo:end ?pfse62 ; up:ligand ?ligand63 ; rdf:type up:Binding_Site_Annotation . ?pfsb61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?pfse62 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?ligand63 rdfs:subClassOf chebi:60240 . ?pfs66 up:annotation ?annotation67 . ?annotation67 faldo:begin ?pfsb68 ; faldo:end ?pfse69 ; up:ligand ?ligand70 ; rdf:type up:Binding_Site_Annotation . ?pfsb68 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?pfse69 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?ligand70 rdfs:subClassOf ?molecule71 . ?molecule71 rdfs:label 'substrate' . ?pfs74 up:annotation ?annotation75 . ?annotation75 faldo:begin ?pfsb76 ; faldo:end ?pfse77 ; up:ligand ?ligand78 ; rdf:type up:Binding_Site_Annotation . ?pfsb76 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?pfse77 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . ?ligand78 rdfs:subClassOf ?molecule79 . ?molecule79 rdfs:label 'substrate' . ?pfs82 up:annotation ?annotation83 . ?annotation83 faldo:begin ?pfsb84 ; faldo:end ?pfse85 ; up:ligand ?ligand86 ; rdf:type up:Binding_Site_Annotation . ?pfsb84 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . ?pfse85 faldo:position ?thisPositionOn89 ; rdf:type faldo:ExactPosition . ?ligand86 rdfs:subClassOf ?molecule87 . ?molecule87 rdfs:label 'substrate' . ?pfs90 up:annotation ?annotation91 . ?annotation91 faldo:begin ?pfsb92 ; faldo:end ?pfse93 ; up:ligand ?ligand94 ; rdf:type up:Binding_Site_Annotation . ?pfsb92 faldo:position ?thisPositionOn96 ; rdf:type faldo:ExactPosition . ?pfse93 faldo:position ?thisPositionOn97 ; rdf:type faldo:ExactPosition . ?ligand94 rdfs:subClassOf ?molecule95 . ?molecule95 rdfs:label 'substrate' . _:865052 a rdf:Statement ; up:attribution _:865015 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:865053 a rdf:Statement ; up:attribution _:865016 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:865054 a rdf:Statement ; up:attribution _:865017 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:865055 a rdf:Statement ; up:attribution _:865018 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:865056 a rdf:Statement ; up:attribution _:865019 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:12 . _:865057 a rdf:Statement ; up:attribution _:865020 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:865058 a rdf:Statement ; up:attribution _:865021 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:865059 a rdf:Statement ; up:attribution _:865022 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:539 . _:865060 a rdf:Statement ; up:attribution _:865023 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:865061 a rdf:Statement ; up:attribution _:865024 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:819 . _:865062 a rdf:Statement ; up:attribution _:865025 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:865063 a rdf:Statement ; up:attribution _:865026 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016747 . _:865064 a rdf:Statement ; up:attribution _:865027 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0002949 . _:865065 a rdf:Statement ; up:attribution _:865028 ; rdf:subject ?case7 ; rdf:predicate up:recommendedName ; rdf:object ?name8 . _:865066 a rdf:Statement ; up:attribution _:865029 ; rdf:subject ?case7 ; rdf:predicate up:alternativeName ; rdf:object ?name9 . _:865067 a rdf:Statement ; up:attribution _:865030 ; rdf:subject ?case7 ; rdf:predicate up:alternativeName ; rdf:object ?name10 . _:865068 a rdf:Statement ; up:attribution _:865031 ; rdf:subject ?case7 ; rdf:predicate up:alternativeName ; rdf:object ?name12 . _:865069 a rdf:Statement ; up:attribution _:865032 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:10 . _:865070 a rdf:Statement ; up:attribution _:865033 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:804 . _:865071 a rdf:Statement ; up:attribution _:865034 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:805 . _:865072 a rdf:Statement ; up:attribution _:865035 ; rdf:subject ?case14 ; rdf:predicate up:recommendedName ; rdf:object ?name15 . _:865073 a rdf:Statement ; up:attribution _:865036 ; rdf:subject ?case14 ; rdf:predicate up:alternativeName ; rdf:object ?name16 . _:865074 a rdf:Statement ; up:attribution _:865037 ; rdf:subject ?case14 ; rdf:predicate up:alternativeName ; rdf:object ?name17 . _:865075 a rdf:Statement ; up:attribution _:865038 ; rdf:subject ?case14 ; rdf:predicate up:alternativeName ; rdf:object ?name18 . _:865076 a rdf:Statement ; up:attribution _:865039 ; rdf:subject ?case14 ; rdf:predicate up:alternativeName ; rdf:object ?name20 . _:865077 a rdf:Statement ; up:attribution _:865040 ; rdf:subject ?case24 ; rdf:predicate up:recommendedName ; rdf:object ?name25 . _:865078 a rdf:Statement ; up:attribution _:865041 ; rdf:subject ?case24 ; rdf:predicate up:alternativeName ; rdf:object ?name26 . _:865079 a rdf:Statement ; up:attribution _:865042 ; rdf:subject ?case24 ; rdf:predicate up:alternativeName ; rdf:object ?name28 . _:865080 a rdf:Statement ; up:source unirule:MF_03180 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:865081 a rdf:Statement ; up:attribution _:865043 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:865082 a rdf:Statement ; up:source unirule:MF_03180 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:865083 a rdf:Statement ; up:attribution _:865044 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:865084 a rdf:Statement ; up:source unirule:MF_03180 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:865085 a rdf:Statement ; up:attribution _:865045 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:865086 a rdf:Statement ; up:source unirule:MF_03180 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:865087 a rdf:Statement ; up:attribution _:865046 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:865088 a rdf:Statement ; up:source unirule:MF_03180 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:865089 a rdf:Statement ; up:attribution _:865047 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:865090 a rdf:Statement ; up:source unirule:MF_03180 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:865091 a rdf:Statement ; up:attribution _:865048 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:865092 a rdf:Statement ; up:source unirule:MF_03180 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:865093 a rdf:Statement ; up:attribution _:865049 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:865094 a rdf:Statement ; up:source unirule:MF_03180 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:865095 a rdf:Statement ; up:attribution _:865050 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:865096 a rdf:Statement ; up:source unirule:MF_03180 ; rdf:subject ?pfs90 ; rdf:predicate up:annotation ; rdf:object ?annotation91 . _:865097 a rdf:Statement ; up:attribution _:865051 ; rdf:subject ?pfs90 ; rdf:predicate up:annotation ; rdf:object ?annotation91 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03180 #Rule MF_03180 Created by:? on:2013-10-17 Modified by:Edouard de Castro on:2024-09-03 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01446 . ?thisOrganism rdfs:subClassOf+ taxon:2759 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_01447 . })) . BIND(URI(CONCAT(STR(?this), '#MF_03180a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_03180a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_03180a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_03180a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7103 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7105 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9UXT7MF_0144698 . ?templateMotifSequenceMatchRegionQ9UXT7103 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7104 . ?templateMotifSequenceMatchBeginQ9UXT7104 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT799 ; faldo:reference isoform:Q9UXT7-1 . ?templateMotifSequenceProfileAlignmentOperationQ9UXT7105 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . ?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446109 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446100 . ?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446108 . ?targetMotifMatchRegionMatchBeginMF_01446108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446101 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01446109 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_0144698, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_0144698) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_0144698, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionQ9UXT799) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446100, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446100, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) . BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_01446101) - 1) AS ?thisPositionOn36) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_0144698, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_0144698) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_0144698, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionQ9UXT799) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446100, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446100, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) . BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01446101) - 1) AS ?thisPositionOn37) . BIND(?this AS ?pfs1t114) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse33) . FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][SA]G[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)))) . BIND(URI(CONCAT(STR(?this), '#MF_03180a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7120 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7122 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9UXT7MF_01446115 . ?templateMotifSequenceMatchRegionQ9UXT7120 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7121 . ?templateMotifSequenceMatchBeginQ9UXT7121 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7116 ; faldo:reference isoform:Q9UXT7-1 . ?templateMotifSequenceProfileAlignmentOperationQ9UXT7122 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . ?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446126 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446117 . ?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446125 . ?targetMotifMatchRegionMatchBeginMF_01446125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446118 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01446126 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446115, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446115) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446115, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionQ9UXT7116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446117, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446117, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) . BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_01446118) - 1) AS ?thisPositionOn43) . BIND(?thisPositionOn43 AS ?thisPositionOn44) . BIND(?this AS ?pfs1t129) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_03180a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7135 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7137 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9UXT7MF_01446130 . ?templateMotifSequenceMatchRegionQ9UXT7135 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7136 . ?templateMotifSequenceMatchBeginQ9UXT7136 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7131 ; faldo:reference isoform:Q9UXT7-1 . ?templateMotifSequenceProfileAlignmentOperationQ9UXT7137 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . ?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446141 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446132 . ?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446140 . ?targetMotifMatchRegionMatchBeginMF_01446140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446133 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01446141 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446130, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446130) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446130, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionQ9UXT7131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446132, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446132) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446132, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446132) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) . BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_01446133) - 1) AS ?thisPositionOn50) . BIND(?thisPositionOn50 AS ?thisPositionOn51) . BIND(?this AS ?pfs1t144) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_03180a46')) AS ?annotation46) . BIND(?this AS ?pfs45) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7150 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7152 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9UXT7MF_01446145 . ?templateMotifSequenceMatchRegionQ9UXT7150 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7151 . ?templateMotifSequenceMatchBeginQ9UXT7151 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7146 ; faldo:reference isoform:Q9UXT7-1 . ?templateMotifSequenceProfileAlignmentOperationQ9UXT7152 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . ?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446156 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446147 . ?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446155 . ?targetMotifMatchRegionMatchBeginMF_01446155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446148 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01446156 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446145, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446145) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446145, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionQ9UXT7146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446147, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446147) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446147, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446147) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) . BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_01446148) - 1) AS ?thisPositionOn57) . BIND(?thisPositionOn57 AS ?thisPositionOn58) . BIND(?this AS ?pfs1t159) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_03180a53')) AS ?annotation53) . BIND(?this AS ?pfs52) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7165 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7167 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9UXT7MF_01446160 . ?templateMotifSequenceMatchRegionQ9UXT7165 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7166 . ?templateMotifSequenceMatchBeginQ9UXT7166 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7161 ; faldo:reference isoform:Q9UXT7-1 . ?templateMotifSequenceProfileAlignmentOperationQ9UXT7167 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . ?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446171 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446162 . ?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446170 . ?targetMotifMatchRegionMatchBeginMF_01446170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446163 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01446171 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446160, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446160) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446160, CONCAT('^(?:-*[^-]){', STR(((285 - ?templateMotifSequenceMatchBeginPositionQ9UXT7161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446162, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446162) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446162, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446162) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) . BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_01446163) - 1) AS ?thisPositionOn64) . BIND(?thisPositionOn64 AS ?thisPositionOn65) . BIND(?this AS ?pfs1t174) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_03180a60')) AS ?annotation60) . BIND(?this AS ?pfs59) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7180 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7182 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9UXT7MF_01446175 . ?templateMotifSequenceMatchRegionQ9UXT7180 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7181 . ?templateMotifSequenceMatchBeginQ9UXT7181 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7176 ; faldo:reference isoform:Q9UXT7-1 . ?templateMotifSequenceProfileAlignmentOperationQ9UXT7182 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . ?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446186 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446177 . ?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446185 . ?targetMotifMatchRegionMatchBeginMF_01446185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446178 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01446186 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446175, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446175) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446175, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionQ9UXT7176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446177, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446177) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446177, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446177) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) . BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_01446178) - 1) AS ?thisPositionOn72) . BIND(?thisPositionOn72 AS ?thisPositionOn73) . BIND(?this AS ?pfs1t189) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb68) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse69) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_03180a67')) AS ?annotation67) . BIND(?this AS ?pfs66) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7195 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7197 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9UXT7MF_01446190 . ?templateMotifSequenceMatchRegionQ9UXT7195 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7196 . ?templateMotifSequenceMatchBeginQ9UXT7196 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7191 ; faldo:reference isoform:Q9UXT7-1 . ?templateMotifSequenceProfileAlignmentOperationQ9UXT7197 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . ?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446201 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446192 . ?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446200 . ?targetMotifMatchRegionMatchBeginMF_01446200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446193 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01446201 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446190, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446190) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446190, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionQ9UXT7191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446192, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446192) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446192, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446192) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) . BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_01446193) - 1) AS ?thisPositionOn80) . BIND(?thisPositionOn80 AS ?thisPositionOn81) . BIND(?this AS ?pfs1t204) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse77) . FILTER (REGEX('[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_03180a75')) AS ?annotation75) . BIND(?this AS ?pfs74) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7210 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7212 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9UXT7MF_01446205 . ?templateMotifSequenceMatchRegionQ9UXT7210 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7211 . ?templateMotifSequenceMatchBeginQ9UXT7211 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7206 ; faldo:reference isoform:Q9UXT7-1 . ?templateMotifSequenceProfileAlignmentOperationQ9UXT7212 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . ?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446216 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446207 . ?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446215 . ?targetMotifMatchRegionMatchBeginMF_01446215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446208 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01446216 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446205, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446205) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446205, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionQ9UXT7206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446207, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446207) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446207, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446207) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) . BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_01446208) - 1) AS ?thisPositionOn88) . BIND(?thisPositionOn88 AS ?thisPositionOn89) . BIND(?this AS ?pfs1t219) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb84) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse85) . FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_03180a83')) AS ?annotation83) . BIND(?this AS ?pfs82) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7225 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7227 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9UXT7MF_01446220 . ?templateMotifSequenceMatchRegionQ9UXT7225 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7226 . ?templateMotifSequenceMatchBeginQ9UXT7226 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7221 ; faldo:reference isoform:Q9UXT7-1 . ?templateMotifSequenceProfileAlignmentOperationQ9UXT7227 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . ?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446231 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446222 . ?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446230 . ?targetMotifMatchRegionMatchBeginMF_01446230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446223 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01446231 edam:has_input signature:MF_01446 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446220, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446220) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446220, CONCAT('^(?:-*[^-]){', STR(((257 - ?templateMotifSequenceMatchBeginPositionQ9UXT7221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446222, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446222) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446222, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446222) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) . BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_01446223) - 1) AS ?thisPositionOn96) . BIND(?thisPositionOn96 AS ?thisPositionOn97) . BIND(?this AS ?pfs1t234) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb92) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse93) . FILTER (REGEX('[NS]', SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_03180a91')) AS ?annotation91) . BIND(?this AS ?pfs90) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4751 . BIND(?this AS ?case7) . BIND(URI(CONCAT(STR(?this), '#MF_03180a8')) AS ?name8) . BIND(URI(CONCAT(STR(?this), '#MF_03180a9')) AS ?name9) . BIND(URI(CONCAT(STR(?this), '#MF_03180a10')) AS ?name10) . OPTIONAL { ?this up:encodedBy ?gene238 . ?gene238 up:locusName ?geneLocus236 . } OPTIONAL { ?this up:encodedBy ?gene238 . ?gene238 up:orfName ?geneOrf237 . } BIND(IF(BOUND(?geneLocus236), ?geneLocus236, ?geneOrf237) AS ?part235) . BIND(CONCAT('t(6)A37 threonylcarbamoyladenosine biosynthesis protein ', ?part235) AS ?nameValue11) . BIND(URI(CONCAT(STR(?this), '#MF_03180a12')) AS ?name12) . OPTIONAL { ?this up:encodedBy ?gene242 . ?gene242 up:locusName ?geneLocus240 . } OPTIONAL { ?this up:encodedBy ?gene242 . ?gene242 up:orfName ?geneOrf241 . } BIND(IF(BOUND(?geneLocus240), ?geneLocus240, ?geneOrf241) AS ?part239) . BIND(CONCAT('tRNA threonylcarbamoyladenosine biosynthesis protein ', ?part239) AS ?nameValue13) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . BIND(?this AS ?case14) . BIND(URI(CONCAT(STR(?this), '#MF_03180a15')) AS ?name15) . BIND(URI(CONCAT(STR(?this), '#MF_03180a16')) AS ?name16) . BIND(URI(CONCAT(STR(?this), '#MF_03180a17')) AS ?name17) . BIND(URI(CONCAT(STR(?this), '#MF_03180a18')) AS ?name18) . OPTIONAL { ?this up:encodedBy ?gene246 . ?gene246 up:locusName ?geneLocus244 . } OPTIONAL { ?this up:encodedBy ?gene246 . ?gene246 up:orfName ?geneOrf245 . } BIND(IF(BOUND(?geneLocus244), ?geneLocus244, ?geneOrf245) AS ?part243) . BIND(CONCAT('t(6)A37 threonylcarbamoyladenosine biosynthesis protein ', ?part243) AS ?nameValue19) . BIND(URI(CONCAT(STR(?this), '#MF_03180a20')) AS ?name20) . OPTIONAL { ?this up:encodedBy ?gene250 . ?gene250 up:locusName ?geneLocus248 . } OPTIONAL { ?this up:encodedBy ?gene250 . ?gene250 up:orfName ?geneOrf249 . } BIND(IF(BOUND(?geneLocus248), ?geneLocus248, ?geneOrf249) AS ?part247) . BIND(CONCAT('tRNA threonylcarbamoyladenosine biosynthesis protein ', ?part247) AS ?nameValue21) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33083 . BIND(?this AS ?case22) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33090 . BIND(?this AS ?case23) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon251 {taxon:7742 taxon:4751} ?thisOrganism rdfs:subClassOf+ ?supertaxon251 . })) . BIND(?this AS ?case24) . BIND(URI(CONCAT(STR(?this), '#MF_03180a25')) AS ?name25) . BIND(URI(CONCAT(STR(?this), '#MF_03180a26')) AS ?name26) . OPTIONAL { ?this up:encodedBy ?gene255 . ?gene255 up:locusName ?geneLocus253 . } OPTIONAL { ?this up:encodedBy ?gene255 . ?gene255 up:orfName ?geneOrf254 . } BIND(IF(BOUND(?geneLocus253), ?geneLocus253, ?geneOrf254) AS ?part252) . BIND(CONCAT('t(6)A37 threonylcarbamoyladenosine biosynthesis protein ', ?part252) AS ?nameValue27) . BIND(URI(CONCAT(STR(?this), '#MF_03180a28')) AS ?name28) . OPTIONAL { ?this up:encodedBy ?gene259 . ?gene259 up:locusName ?geneLocus257 . } OPTIONAL { ?this up:encodedBy ?gene259 . ?gene259 up:orfName ?geneOrf258 . } BIND(IF(BOUND(?geneLocus257), ?geneLocus257, ?geneOrf258) AS ?part256) . BIND(CONCAT('tRNA threonylcarbamoyladenosine biosynthesis protein ', ?part256) AS ?nameValue29) . } }