CONSTRUCT { _:873521 up:source unirule:MF_03194 . _:873522 up:source unirule:MF_03194 . _:873523 up:source unirule:MF_03194 . _:873524 up:source unirule:MF_03194 . _:873525 up:source unirule:MF_03194 . _:873526 up:source unirule:MF_03194 . _:873527 up:source unirule:MF_03194 . _:873528 up:source unirule:MF_03194 . _:873529 up:source unirule:MF_03194 . _:873530 up:source unirule:MF_03194 . _:873531 up:source unirule:MF_03194 . _:873532 up:source unirule:MF_03194 . _:873533 up:source unirule:MF_03194 . _:873534 up:source unirule:MF_03194 . _:873535 up:source unirule:MF_03194 . _:873536 up:source unirule:MF_03194 . _:873537 up:source unirule:MF_03194 . _:873538 up:source unirule:MF_03194 . _:873539 up:source unirule:MF_03194 . _:873540 up:source unirule:MF_03194 . _:873541 up:source unirule:MF_03194 . _:873542 up:source unirule:MF_03194 . _:873543 up:source unirule:MF_03194 . _:873544 up:source unirule:MF_03194 . _:873545 up:source unirule:MF_03194 . _:873546 up:source unirule:MF_03194 . ?this up:alternativeName ?name1 ; up:annotation ?annotation2 , ?annotation4 , ?annotation5 , ?annotation6 , ?annotation8 ; up:classifiedWith GO:0006744 , GO:0016709 , GO:0031314 , keyword:408 , keyword:472 , keyword:479 , keyword:496 , keyword:503 , keyword:560 , keyword:831 , keyword:999 ; up:recommendedName ?name0 . ?name0 up:ecName '1.14.99.60' ; up:fullName '5-demethoxyubiquinone hydroxylase, mitochondrial' ; up:shortName 'DMQ hydroxylase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Ubiquinone biosynthesis monooxygenase COQ7' ; rdf:type up:Structured_Name . ?annotation2 up:activity ?activity3 ; rdf:type up:Catalytic_Activity_Annotation . ?activity3 up:catalyticActivity <http://rdf.rhea-db.org/50908>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.14.99.60>. ?annotation4 up:cofactor chebi:24875 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 2 iron ions per subunit.' . ?annotation5 a up:Pathway_Annotation ; rdfs:comment 'Cofactor biosynthesis; ubiquinone biosynthesis.' . ?annotation6 a up:Subcellular_Location_Annotation . ?annotation6li7 up:cellularComponent <http://purl.uniprot.org/locations/null>; up:orientation <http://purl.uniprot.org/locations/null>; up:topology <http://purl.uniprot.org/locations/null>. ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the COQ7 family.' . ?pfs19 up:annotation ?annotation20 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; up:ligand ?ligand23 ; rdf:type up:Binding_Site_Annotation . ?pfsb21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?ligand23 rdfs:subClassOf chebi:24875 . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; up:ligand ?ligand30 ; rdf:type up:Binding_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand30 rdfs:subClassOf chebi:24875 . ?pfs33 up:annotation ?annotation34 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; up:ligand ?ligand37 ; rdf:type up:Binding_Site_Annotation . ?pfsb35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?ligand37 rdfs:subClassOf chebi:24875 . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation . ?pfsb42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf chebi:24875 . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation . ?pfsb49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf chebi:24875 . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf chebi:24875 . ?pfs61 up:annotation ?annotation62 . ?annotation62 faldo:begin ?pfsb63 ; faldo:end ?pfse64 ; up:ligand ?ligand65 ; rdf:type up:Binding_Site_Annotation . ?pfsb63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?ligand65 rdfs:subClassOf chebi:24875 . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; up:ligand ?ligand72 ; rdf:type up:Binding_Site_Annotation . ?pfsb70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?ligand72 rdfs:subClassOf chebi:24875 . _:873547 a rdf:Statement ; up:attribution _:873521 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:873548 a rdf:Statement ; up:attribution _:873522 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:873549 a rdf:Statement ; up:attribution _:873523 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:873550 a rdf:Statement ; up:attribution _:873524 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:873551 a rdf:Statement ; up:attribution _:873525 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:873552 a rdf:Statement ; up:attribution _:873526 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:873553 a rdf:Statement ; up:attribution _:873527 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:873554 a rdf:Statement ; up:attribution _:873528 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:873555 a rdf:Statement ; up:attribution _:873529 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:873556 a rdf:Statement ; up:attribution _:873530 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:873557 a rdf:Statement ; up:attribution _:873531 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:496 . _:873558 a rdf:Statement ; up:attribution _:873532 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:999 . _:873559 a rdf:Statement ; up:attribution _:873533 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:503 . _:873560 a rdf:Statement ; up:attribution _:873534 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:873561 a rdf:Statement ; up:attribution _:873535 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:831 . _:873562 a rdf:Statement ; up:attribution _:873536 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0031314 . _:873563 a rdf:Statement ; up:attribution _:873537 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016709 . _:873564 a rdf:Statement ; up:attribution _:873538 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006744 . _:873565 a rdf:Statement ; up:source unirule:MF_03194 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:873566 a rdf:Statement ; up:attribution _:873539 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:873567 a rdf:Statement ; up:source unirule:MF_03194 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:873568 a rdf:Statement ; up:attribution _:873540 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:873569 a rdf:Statement ; up:source unirule:MF_03194 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:873570 a rdf:Statement ; up:attribution _:873541 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:873571 a rdf:Statement ; up:source unirule:MF_03194 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:873572 a rdf:Statement ; up:attribution _:873542 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:873573 a rdf:Statement ; up:source unirule:MF_03194 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:873574 a rdf:Statement ; up:attribution _:873543 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:873575 a rdf:Statement ; up:source unirule:MF_03194 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:873576 a rdf:Statement ; up:attribution _:873544 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:873577 a rdf:Statement ; up:source unirule:MF_03194 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:873578 a rdf:Statement ; up:attribution _:873545 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:873579 a rdf:Statement ; up:source unirule:MF_03194 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:873580 a rdf:Statement ; up:attribution _:873546 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03194 #Rule MF_03194 Created by:? on:2015-03-27 Modified by:Elisabeth Coudert on:2024-10-10 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01658 . ?thisOrganism rdfs:subClassOf+ taxon:2759 . BIND(URI(CONCAT(STR(?this), '#MF_03194a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_03194a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_03194a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_03194a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_03194a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_03194a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_03194a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionQ9I5R680 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R682 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9I5R6MF_0165875 . ?templateMotifSequenceMatchRegionQ9I5R680 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R681 . ?templateMotifSequenceMatchBeginQ9I5R681 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R676 ; faldo:reference isoform:Q9I5R6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9I5R682 edam:has_input signature:MF_01658 ; rdf:type edam:operation_0300 . ?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0165886 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9I5R6MF_0165877 . ?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0165885 . ?targetMotifMatchRegionMatchBeginMF_0165885 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0165878 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0165886 edam:has_input signature:MF_01658 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_0165875, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_0165875) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_0165875, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionQ9I5R676) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_0165877, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_0165877) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_0165877, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_0165877, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_0165877) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_0165877, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) . BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0165878) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs1t89) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_03194a20')) AS ?annotation20) . BIND(?this AS ?pfs19) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionQ9I5R695 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R697 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9I5R6MF_0165890 . ?templateMotifSequenceMatchRegionQ9I5R695 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R696 . ?templateMotifSequenceMatchBeginQ9I5R696 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R691 ; faldo:reference isoform:Q9I5R6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9I5R697 edam:has_input signature:MF_01658 ; rdf:type edam:operation_0300 . ?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658101 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9I5R6MF_0165892 . ?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658100 . ?targetMotifMatchRegionMatchBeginMF_01658100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0165893 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01658101 edam:has_input signature:MF_01658 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_0165890, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_0165890) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_0165890, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionQ9I5R691) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_0165892, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_0165892) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_0165892, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_0165892, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_0165892) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_0165892, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) . BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0165893) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs1t104) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_03194a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6110 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6112 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9I5R6MF_01658105 . ?templateMotifSequenceMatchRegionQ9I5R6110 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6111 . ?templateMotifSequenceMatchBeginQ9I5R6111 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R6106 ; faldo:reference isoform:Q9I5R6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9I5R6112 edam:has_input signature:MF_01658 ; rdf:type edam:operation_0300 . ?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658116 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9I5R6MF_01658107 . ?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658115 . ?targetMotifMatchRegionMatchBeginMF_01658115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658108 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01658116 edam:has_input signature:MF_01658 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_01658105, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_01658105) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_01658105, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionQ9I5R6106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658107, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658107) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658107, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658107) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) . BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_01658108) - 1) AS ?thisPositionOn38) . BIND(?thisPositionOn38 AS ?thisPositionOn39) . BIND(?this AS ?pfs1t119) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_03194a34')) AS ?annotation34) . BIND(?this AS ?pfs33) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6125 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6127 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9I5R6MF_01658120 . ?templateMotifSequenceMatchRegionQ9I5R6125 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6126 . ?templateMotifSequenceMatchBeginQ9I5R6126 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R6121 ; faldo:reference isoform:Q9I5R6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9I5R6127 edam:has_input signature:MF_01658 ; rdf:type edam:operation_0300 . ?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658131 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9I5R6MF_01658122 . ?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658130 . ?targetMotifMatchRegionMatchBeginMF_01658130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658123 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01658131 edam:has_input signature:MF_01658 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_01658120, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_01658120) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_01658120, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionQ9I5R6121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658122, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658122) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658122, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658122) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) . BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_01658123) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs1t134) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_03194a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6140 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6142 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9I5R6MF_01658135 . ?templateMotifSequenceMatchRegionQ9I5R6140 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6141 . ?templateMotifSequenceMatchBeginQ9I5R6141 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R6136 ; faldo:reference isoform:Q9I5R6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9I5R6142 edam:has_input signature:MF_01658 ; rdf:type edam:operation_0300 . ?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658146 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9I5R6MF_01658137 . ?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658145 . ?targetMotifMatchRegionMatchBeginMF_01658145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658138 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01658146 edam:has_input signature:MF_01658 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_01658135, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_01658135) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_01658135, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionQ9I5R6136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658137, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658137) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658137, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658137) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) . BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_01658138) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs1t149) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_03194a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6155 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6157 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9I5R6MF_01658150 . ?templateMotifSequenceMatchRegionQ9I5R6155 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6156 . ?templateMotifSequenceMatchBeginQ9I5R6156 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R6151 ; faldo:reference isoform:Q9I5R6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9I5R6157 edam:has_input signature:MF_01658 ; rdf:type edam:operation_0300 . ?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658161 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9I5R6MF_01658152 . ?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658160 . ?targetMotifMatchRegionMatchBeginMF_01658160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658153 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01658161 edam:has_input signature:MF_01658 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_01658150, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_01658150) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_01658150, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionQ9I5R6151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658152, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658152) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658152, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658152) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) . BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_01658153) - 1) AS ?thisPositionOn59) . BIND(?thisPositionOn59 AS ?thisPositionOn60) . BIND(?this AS ?pfs1t164) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_03194a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6170 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6172 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9I5R6MF_01658165 . ?templateMotifSequenceMatchRegionQ9I5R6170 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6171 . ?templateMotifSequenceMatchBeginQ9I5R6171 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R6166 ; faldo:reference isoform:Q9I5R6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9I5R6172 edam:has_input signature:MF_01658 ; rdf:type edam:operation_0300 . ?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658176 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9I5R6MF_01658167 . ?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658175 . ?targetMotifMatchRegionMatchBeginMF_01658175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658168 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01658176 edam:has_input signature:MF_01658 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_01658165, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_01658165) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_01658165, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionQ9I5R6166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658167, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658167) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658167, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658167) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) . BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_01658168) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs1t179) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_03194a62')) AS ?annotation62) . BIND(?this AS ?pfs61) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch184 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6185 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6187 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9I5R6MF_01658180 . ?templateMotifSequenceMatchRegionQ9I5R6185 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6186 . ?templateMotifSequenceMatchBeginQ9I5R6186 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R6181 ; faldo:reference isoform:Q9I5R6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9I5R6187 edam:has_input signature:MF_01658 ; rdf:type edam:operation_0300 . ?targetMotifMatch188 faldo:location ?targetMotifMatchRegionMatch189 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658191 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9I5R6MF_01658182 . ?targetMotifMatchRegionMatch189 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658190 . ?targetMotifMatchRegionMatchBeginMF_01658190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658183 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01658191 edam:has_input signature:MF_01658 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_01658180, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_01658180) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_01658180, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionQ9I5R6181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658182, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658182) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658182, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658182) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) . BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_01658183) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs1t194) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_03194a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4751 . BIND(?this AS ?case9) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33208 . BIND(?this AS ?case10) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . BIND(?this AS ?case11) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4930 . BIND(?this AS ?case12) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7214 . BIND(?this AS ?case13) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:6237 . BIND(?this AS ?case14) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon195 {taxon:4751 taxon:7742} ?thisOrganism rdfs:subClassOf+ ?supertaxon195 . })) . BIND(?this AS ?case15) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon196 {taxon:33208 taxon:4930} ?thisOrganism rdfs:subClassOf+ ?supertaxon196 . })) . BIND(?this AS ?case16) . } OPTIONAL { ?this a up:Protein . VALUES ?supertaxon197 {taxon:7742 taxon:4751 taxon:33090} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon197 . BIND(?this AS ?case17) . } OPTIONAL { ?this a up:Protein . { ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:50557 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:7214 . })) . } UNION { ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33083 . } BIND(?this AS ?case18) . } }