CONSTRUCT { _:892806 up:source unirule:MF_04026 . _:892807 up:source unirule:MF_04026 . _:892808 up:source unirule:MF_04026 . _:892809 up:source unirule:MF_04026 . _:892810 up:source unirule:MF_04026 . _:892811 up:source unirule:MF_04026 . _:892812 up:source unirule:MF_04026 . _:892813 up:source unirule:MF_04026 . _:892814 up:source unirule:MF_04026 . _:892815 up:source unirule:MF_04026 . _:892816 up:source unirule:MF_04026 . _:892817 up:source unirule:MF_04026 . _:892818 up:source unirule:MF_04026 . _:892819 up:source unirule:MF_04026 . _:892820 up:source unirule:MF_04026 . _:892821 up:source unirule:MF_04026 . _:892822 up:source unirule:MF_04026 . _:892823 up:source unirule:MF_04026 . _:892824 up:source unirule:MF_04026 . _:892825 up:source unirule:MF_04026 . _:892826 up:source unirule:MF_04026 . _:892827 up:source unirule:MF_04026 . _:892828 up:source unirule:MF_04026 . _:892829 up:source unirule:MF_04026 . _:892830 up:source unirule:MF_04026 . _:892831 up:source unirule:MF_04026 . _:892832 up:source unirule:MF_04026 . _:892833 up:source unirule:MF_04026 . _:892834 up:source unirule:MF_04026 . _:892835 up:source unirule:MF_04026 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 ; up:classifiedWith GO:0004748 , GO:0005524 , GO:0016032 , keyword:1015 , keyword:244 , keyword:547 , keyword:560 , keyword:67 ; up:recommendedName ?name0 . ?name0 up:ecName '1.17.4.1' ; up:fullName 'Ribonucleoside-diphosphate reductase large subunit' ; up:shortName 'R1' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Ribonucleotide reductase large subunit' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'RIR1' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Ribonucleoside-diphosphate reductase holoenzyme provides the precursors necessary for viral DNA synthesis. Allows virus growth in non-dividing cells, as well as reactivation from latency in infected hosts. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/23252>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.17.4.1>. ?annotation6 a up:Subunit_Annotation ; rdfs:comment 'Heterotetramer composed of a homodimer of the large subunit (R1) and a homodimer of the small subunit (R2). Larger multisubunit protein complex are also active, composed of (R1)n(R2)n.' . ?annotation7 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the ribonucleoside diphosphate reductase large chain family.' . ?pfs8 up:annotation ?annotation9 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; up:ligand ?ligand12 ; rdf:type up:Binding_Site_Annotation . ?pfsb10 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?ligand12 rdfs:subClassOf ?molecule13 . ?molecule13 rdfs:label 'substrate' . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf ?molecule21 . ?molecule21 rdfs:label 'substrate' . ?pfs24 up:annotation ?annotation25 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; up:ligand ?ligand28 ; rdf:type up:Binding_Site_Annotation . ?pfsb26 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?ligand28 rdfs:subClassOf ?molecule29 . ?molecule29 rdfs:label 'substrate' . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor' . ?pfsb34 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Cysteine radical intermediate' . ?pfsb40 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor' . ?pfsb46 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfs50 up:annotation ?annotation51 . ?annotation51 faldo:begin ?pfsb52 ; faldo:end ?pfse53 ; up:ligand ?ligand54 ; rdf:type up:Binding_Site_Annotation . ?pfsb52 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse53 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?ligand54 rdfs:subClassOf ?molecule55 . ?molecule55 rdfs:label 'substrate' . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf ?molecule63 . ?molecule63 rdfs:label 'substrate' . ?pfs66 up:annotation ?annotation67 . ?annotation67 faldo:begin ?pfsb68 ; faldo:end ?pfse69 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for hydrogen atom transfer' . ?pfsb68 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?pfse69 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?pfs72 up:annotation ?annotation73 . ?annotation73 faldo:begin ?pfsb74 ; faldo:end ?pfse75 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for hydrogen atom transfer' . ?pfsb74 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?pfse75 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?pfs78 up:annotation ?annotation79 . ?annotation79 faldo:begin ?pfsb80 ; faldo:end ?pfse81 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for electron transfer' . ?pfsb80 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?pfse81 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?pfs84 up:annotation ?annotation85 . ?annotation85 faldo:begin ?pfsb86 ; faldo:end ?pfse87 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for electron transfer' . ?pfsb86 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . ?pfse87 faldo:position ?thisPositionOn89 ; rdf:type faldo:ExactPosition . ?pfs90 up:annotation ?annotation91 . ?annotation91 faldo:begin ?pfsb92 ; faldo:end ?pfse93 ; rdf:type up:Site_Annotation ; rdfs:comment 'Interacts with thioredoxin/glutaredoxin' . ?pfsb92 faldo:position ?thisPositionOn94 ; rdf:type faldo:ExactPosition . ?pfse93 faldo:position ?thisPositionOn95 ; rdf:type faldo:ExactPosition . ?pfs96 up:annotation ?annotation97 . ?annotation97 faldo:begin ?pfsb98 ; faldo:end ?pfse99 ; rdf:type up:Site_Annotation ; rdfs:comment 'Interacts with thioredoxin/glutaredoxin' . ?pfsb98 faldo:position ?thisPositionOn100 ; rdf:type faldo:ExactPosition . ?pfse99 faldo:position ?thisPositionOn101 ; rdf:type faldo:ExactPosition . ?pfs102 up:annotation ?annotation103 . ?annotation103 faldo:begin ?pfsb104 ; faldo:end ?pfse105 ; rdf:type up:Disulfide_Bond_Annotation ; rdfs:comment 'Redox-active' . ?pfsb104 faldo:position ?thisPositionOn106 ; rdf:type faldo:ExactPosition . ?pfse105 faldo:position ?thisPositionOn107 ; rdf:type faldo:ExactPosition . _:892836 a rdf:Statement ; up:attribution _:892806 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:892837 a rdf:Statement ; up:attribution _:892807 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:892838 a rdf:Statement ; up:attribution _:892808 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:892839 a rdf:Statement ; up:attribution _:892809 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:892840 a rdf:Statement ; up:attribution _:892810 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:892841 a rdf:Statement ; up:attribution _:892811 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:892842 a rdf:Statement ; up:attribution _:892812 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:892843 a rdf:Statement ; up:attribution _:892813 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:892844 a rdf:Statement ; up:attribution _:892814 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1015 . _:892845 a rdf:Statement ; up:attribution _:892815 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:244 . _:892846 a rdf:Statement ; up:attribution _:892816 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:892847 a rdf:Statement ; up:attribution _:892817 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:892848 a rdf:Statement ; up:attribution _:892818 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:892849 a rdf:Statement ; up:attribution _:892819 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004748 . _:892850 a rdf:Statement ; up:attribution _:892820 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016032 . _:892851 a rdf:Statement ; up:source unirule:MF_04026 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:892852 a rdf:Statement ; up:attribution _:892821 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:892853 a rdf:Statement ; up:source unirule:MF_04026 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:892854 a rdf:Statement ; up:attribution _:892822 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:892855 a rdf:Statement ; up:source unirule:MF_04026 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:892856 a rdf:Statement ; up:attribution _:892823 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:892857 a rdf:Statement ; up:source unirule:MF_04026 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:892858 a rdf:Statement ; up:attribution _:892824 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:892859 a rdf:Statement ; up:source unirule:MF_04026 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:892860 a rdf:Statement ; up:attribution _:892825 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:892861 a rdf:Statement ; up:source unirule:MF_04026 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:892862 a rdf:Statement ; up:attribution _:892826 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:892863 a rdf:Statement ; up:source unirule:MF_04026 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:892864 a rdf:Statement ; up:attribution _:892827 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:892865 a rdf:Statement ; up:source unirule:MF_04026 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:892866 a rdf:Statement ; up:attribution _:892828 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:892867 a rdf:Statement ; up:source unirule:MF_04026 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:892868 a rdf:Statement ; up:attribution _:892829 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:892869 a rdf:Statement ; up:source unirule:MF_04026 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:892870 a rdf:Statement ; up:attribution _:892830 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:892871 a rdf:Statement ; up:source unirule:MF_04026 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:892872 a rdf:Statement ; up:attribution _:892831 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:892873 a rdf:Statement ; up:source unirule:MF_04026 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:892874 a rdf:Statement ; up:attribution _:892832 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:892875 a rdf:Statement ; up:source unirule:MF_04026 ; rdf:subject ?pfs90 ; rdf:predicate up:annotation ; rdf:object ?annotation91 . _:892876 a rdf:Statement ; up:attribution _:892833 ; rdf:subject ?pfs90 ; rdf:predicate up:annotation ; rdf:object ?annotation91 . _:892877 a rdf:Statement ; up:source unirule:MF_04026 ; rdf:subject ?pfs96 ; rdf:predicate up:annotation ; rdf:object ?annotation97 . _:892878 a rdf:Statement ; up:attribution _:892834 ; rdf:subject ?pfs96 ; rdf:predicate up:annotation ; rdf:object ?annotation97 . _:892879 a rdf:Statement ; up:source unirule:MF_04026 ; rdf:subject ?pfs102 ; rdf:predicate up:annotation ; rdf:object ?annotation103 . _:892880 a rdf:Statement ; up:attribution _:892835 ; rdf:subject ?pfs102 ; rdf:predicate up:annotation ; rdf:object ?annotation103 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04026 #Rule MF_04026 Created by:pmasson on:2016-04-28 Modified by:aauchinc on:2023-10-16 VALUES ?supertaxon108 {taxon:10293 taxon:10374} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04026 . ?thisOrganism rdfs:subClassOf+ ?supertaxon108 . BIND(URI(CONCAT(STR(?this), '#MF_04026a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_04026a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_04026a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_04026a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_04026a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_04026a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP08543114 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543116 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08543MF_04026109 . ?templateMotifSequenceMatchRegionP08543114 faldo:begin ?templateMotifSequenceMatchBeginP08543115 . ?templateMotifSequenceMatchBeginP08543115 faldo:position ?templateMotifSequenceMatchBeginPositionP08543110 ; faldo:reference isoform:P08543-1 . ?templateMotifSequenceProfileAlignmentOperationP08543116 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . ?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026120 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08543MF_04026111 . ?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026119 . ?targetMotifMatchRegionMatchBeginMF_04026119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026112 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04026120 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026109, 1, (STRLEN(?templateMotifCigarP08543MF_04026109) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026109, CONCAT('^(?:-*[^-]){', STR(((581 - ?templateMotifSequenceMatchBeginPositionP08543110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026111, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026111) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026111, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026111) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) . BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_04026112) - 1) AS ?thisPositionOn14) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026109, 1, (STRLEN(?templateMotifCigarP08543MF_04026109) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026109, CONCAT('^(?:-*[^-]){', STR(((582 - ?templateMotifSequenceMatchBeginPositionP08543110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026111, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026111) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026111, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026111) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) . BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_04026112) - 1) AS ?thisPositionOn15) . BIND(?this AS ?pfs1t125) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse11) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'SC')) . BIND(URI(CONCAT(STR(?this), '#MF_04026a9')) AS ?annotation9) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionP08543131 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543133 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08543MF_04026126 . ?templateMotifSequenceMatchRegionP08543131 faldo:begin ?templateMotifSequenceMatchBeginP08543132 . ?templateMotifSequenceMatchBeginP08543132 faldo:position ?templateMotifSequenceMatchBeginPositionP08543127 ; faldo:reference isoform:P08543-1 . ?templateMotifSequenceProfileAlignmentOperationP08543133 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . ?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026137 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08543MF_04026128 . ?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026136 . ?targetMotifMatchRegionMatchBeginMF_04026136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026129 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04026137 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026126, 1, (STRLEN(?templateMotifCigarP08543MF_04026126) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026126, CONCAT('^(?:-*[^-]){', STR(((791 - ?templateMotifSequenceMatchBeginPositionP08543127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026128, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026128) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026128, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026128) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) . BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_04026129) - 1) AS ?thisPositionOn22) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026126, 1, (STRLEN(?templateMotifCigarP08543MF_04026126) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026126, CONCAT('^(?:-*[^-]){', STR(((795 - ?templateMotifSequenceMatchBeginPositionP08543127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026128, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026128) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026128, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026128) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) . BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_04026129) - 1) AS ?thisPositionOn23) . BIND(?this AS ?pfs1t142) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse19) . FILTER (REGEX('NLC[TA]E', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) . BIND(URI(CONCAT(STR(?this), '#MF_04026a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionP08543148 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543150 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08543MF_04026143 . ?templateMotifSequenceMatchRegionP08543148 faldo:begin ?templateMotifSequenceMatchBeginP08543149 . ?templateMotifSequenceMatchBeginP08543149 faldo:position ?templateMotifSequenceMatchBeginPositionP08543144 ; faldo:reference isoform:P08543-1 . ?templateMotifSequenceProfileAlignmentOperationP08543150 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . ?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026154 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08543MF_04026145 . ?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026153 . ?targetMotifMatchRegionMatchBeginMF_04026153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026146 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04026154 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026143, 1, (STRLEN(?templateMotifCigarP08543MF_04026143) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026143, CONCAT('^(?:-*[^-]){', STR(((968 - ?templateMotifSequenceMatchBeginPositionP08543144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026145, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026145) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026145, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026145) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) . BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_04026146) - 1) AS ?thisPositionOn30) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026143, 1, (STRLEN(?templateMotifCigarP08543MF_04026143) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026143, CONCAT('^(?:-*[^-]){', STR(((972 - ?templateMotifSequenceMatchBeginPositionP08543144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026145, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026145) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026145, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026145) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) . BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_04026146) - 1) AS ?thisPositionOn31) . BIND(?this AS ?pfs1t159) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse27) . FILTER (REGEX('PT[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][SCT]', SUBSTR(?thisSequenceValue, ?thisPositionOn30, (?thisPositionOn31 - ?thisPositionOn30)))) . BIND(URI(CONCAT(STR(?this), '#MF_04026a25')) AS ?annotation25) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionP08543165 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543167 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08543MF_04026160 . ?templateMotifSequenceMatchRegionP08543165 faldo:begin ?templateMotifSequenceMatchBeginP08543166 . ?templateMotifSequenceMatchBeginP08543166 faldo:position ?templateMotifSequenceMatchBeginPositionP08543161 ; faldo:reference isoform:P08543-1 . ?templateMotifSequenceProfileAlignmentOperationP08543167 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . ?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026171 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08543MF_04026162 . ?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026170 . ?targetMotifMatchRegionMatchBeginMF_04026170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026163 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04026171 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026160, 1, (STRLEN(?templateMotifCigarP08543MF_04026160) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026160, CONCAT('^(?:-*[^-]){', STR(((791 - ?templateMotifSequenceMatchBeginPositionP08543161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026162, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026162) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026162, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026162) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) . BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_04026163) - 1) AS ?thisPositionOn36) . BIND(?thisPositionOn36 AS ?thisPositionOn37) . BIND(?this AS ?pfs1t174) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_04026a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionP08543180 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543182 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08543MF_04026175 . ?templateMotifSequenceMatchRegionP08543180 faldo:begin ?templateMotifSequenceMatchBeginP08543181 . ?templateMotifSequenceMatchBeginP08543181 faldo:position ?templateMotifSequenceMatchBeginPositionP08543176 ; faldo:reference isoform:P08543-1 . ?templateMotifSequenceProfileAlignmentOperationP08543182 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . ?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026186 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08543MF_04026177 . ?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026185 . ?targetMotifMatchRegionMatchBeginMF_04026185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026178 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04026186 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026175, 1, (STRLEN(?templateMotifCigarP08543MF_04026175) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026175, CONCAT('^(?:-*[^-]){', STR(((793 - ?templateMotifSequenceMatchBeginPositionP08543176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026177, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026177) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026177, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026177) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) . BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_04026178) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t189) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_04026a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionP08543195 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543197 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08543MF_04026190 . ?templateMotifSequenceMatchRegionP08543195 faldo:begin ?templateMotifSequenceMatchBeginP08543196 . ?templateMotifSequenceMatchBeginP08543196 faldo:position ?templateMotifSequenceMatchBeginPositionP08543191 ; faldo:reference isoform:P08543-1 . ?templateMotifSequenceProfileAlignmentOperationP08543197 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . ?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026201 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08543MF_04026192 . ?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026200 . ?targetMotifMatchRegionMatchBeginMF_04026200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026193 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04026201 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026190, 1, (STRLEN(?templateMotifCigarP08543MF_04026190) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026190, CONCAT('^(?:-*[^-]){', STR(((795 - ?templateMotifSequenceMatchBeginPositionP08543191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026192, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026192) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026192, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026192) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) . BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_04026193) - 1) AS ?thisPositionOn48) . BIND(?thisPositionOn48 AS ?thisPositionOn49) . BIND(?this AS ?pfs1t204) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_04026a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionP08543210 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543212 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08543MF_04026205 . ?templateMotifSequenceMatchRegionP08543210 faldo:begin ?templateMotifSequenceMatchBeginP08543211 . ?templateMotifSequenceMatchBeginP08543211 faldo:position ?templateMotifSequenceMatchBeginPositionP08543206 ; faldo:reference isoform:P08543-1 . ?templateMotifSequenceProfileAlignmentOperationP08543212 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . ?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026216 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08543MF_04026207 . ?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026215 . ?targetMotifMatchRegionMatchBeginMF_04026215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026208 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04026216 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026205, 1, (STRLEN(?templateMotifCigarP08543MF_04026205) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026205, CONCAT('^(?:-*[^-]){', STR(((566 - ?templateMotifSequenceMatchBeginPositionP08543206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026207, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026207) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026207, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026207) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) . BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_04026208) - 1) AS ?thisPositionOn56) . BIND(?thisPositionOn56 AS ?thisPositionOn57) . BIND(?this AS ?pfs1t219) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse53) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_04026a51')) AS ?annotation51) . BIND(?this AS ?pfs50) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionP08543225 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543227 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08543MF_04026220 . ?templateMotifSequenceMatchRegionP08543225 faldo:begin ?templateMotifSequenceMatchBeginP08543226 . ?templateMotifSequenceMatchBeginP08543226 faldo:position ?templateMotifSequenceMatchBeginPositionP08543221 ; faldo:reference isoform:P08543-1 . ?templateMotifSequenceProfileAlignmentOperationP08543227 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . ?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026231 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08543MF_04026222 . ?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026230 . ?targetMotifMatchRegionMatchBeginMF_04026230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026223 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04026231 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026220, 1, (STRLEN(?templateMotifCigarP08543MF_04026220) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026220, CONCAT('^(?:-*[^-]){', STR(((612 - ?templateMotifSequenceMatchBeginPositionP08543221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026222, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026222) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026222, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026222) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) . BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_04026223) - 1) AS ?thisPositionOn64) . BIND(?thisPositionOn64 AS ?thisPositionOn65) . BIND(?this AS ?pfs1t234) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse61) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_04026a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionP08543240 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543242 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08543MF_04026235 . ?templateMotifSequenceMatchRegionP08543240 faldo:begin ?templateMotifSequenceMatchBeginP08543241 . ?templateMotifSequenceMatchBeginP08543241 faldo:position ?templateMotifSequenceMatchBeginPositionP08543236 ; faldo:reference isoform:P08543-1 . ?templateMotifSequenceProfileAlignmentOperationP08543242 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . ?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026246 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08543MF_04026237 . ?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026245 . ?targetMotifMatchRegionMatchBeginMF_04026245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026238 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04026246 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026235, 1, (STRLEN(?templateMotifCigarP08543MF_04026235) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026235, CONCAT('^(?:-*[^-]){', STR(((582 - ?templateMotifSequenceMatchBeginPositionP08543236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026237, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026237) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026237, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026237) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) . BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_04026238) - 1) AS ?thisPositionOn70) . BIND(?thisPositionOn70 AS ?thisPositionOn71) . BIND(?this AS ?pfs1t249) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb68) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse69) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_04026a67')) AS ?annotation67) . BIND(?this AS ?pfs66) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionP08543255 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543257 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08543MF_04026250 . ?templateMotifSequenceMatchRegionP08543255 faldo:begin ?templateMotifSequenceMatchBeginP08543256 . ?templateMotifSequenceMatchBeginP08543256 faldo:position ?templateMotifSequenceMatchBeginPositionP08543251 ; faldo:reference isoform:P08543-1 . ?templateMotifSequenceProfileAlignmentOperationP08543257 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . ?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026261 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08543MF_04026252 . ?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026260 . ?targetMotifMatchRegionMatchBeginMF_04026260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026253 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04026261 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026250, 1, (STRLEN(?templateMotifCigarP08543MF_04026250) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026250, CONCAT('^(?:-*[^-]){', STR(((808 - ?templateMotifSequenceMatchBeginPositionP08543251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026252, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026252) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026252, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026252) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) . BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_04026253) - 1) AS ?thisPositionOn76) . BIND(?thisPositionOn76 AS ?thisPositionOn77) . BIND(?this AS ?pfs1t264) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb74) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse75) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_04026a73')) AS ?annotation73) . BIND(?this AS ?pfs72) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch269 faldo:location ?templateMotifSequenceMatchRegionP08543270 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543272 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08543MF_04026265 . ?templateMotifSequenceMatchRegionP08543270 faldo:begin ?templateMotifSequenceMatchBeginP08543271 . ?templateMotifSequenceMatchBeginP08543271 faldo:position ?templateMotifSequenceMatchBeginPositionP08543266 ; faldo:reference isoform:P08543-1 . ?templateMotifSequenceProfileAlignmentOperationP08543272 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . ?targetMotifMatch273 faldo:location ?targetMotifMatchRegionMatch274 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026276 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08543MF_04026267 . ?targetMotifMatchRegionMatch274 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026275 . ?targetMotifMatchRegionMatchBeginMF_04026275 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026268 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04026276 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026265, 1, (STRLEN(?templateMotifCigarP08543MF_04026265) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026265, CONCAT('^(?:-*[^-]){', STR(((1111 - ?templateMotifSequenceMatchBeginPositionP08543266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026267, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026267) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026267, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026267) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) . BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_04026268) - 1) AS ?thisPositionOn82) . BIND(?thisPositionOn82 AS ?thisPositionOn83) . BIND(?this AS ?pfs1t279) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb80) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse81) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_04026a79')) AS ?annotation79) . BIND(?this AS ?pfs78) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch284 faldo:location ?templateMotifSequenceMatchRegionP08543285 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543287 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08543MF_04026280 . ?templateMotifSequenceMatchRegionP08543285 faldo:begin ?templateMotifSequenceMatchBeginP08543286 . ?templateMotifSequenceMatchBeginP08543286 faldo:position ?templateMotifSequenceMatchBeginPositionP08543281 ; faldo:reference isoform:P08543-1 . ?templateMotifSequenceProfileAlignmentOperationP08543287 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . ?targetMotifMatch288 faldo:location ?targetMotifMatchRegionMatch289 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026291 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08543MF_04026282 . ?targetMotifMatchRegionMatch289 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026290 . ?targetMotifMatchRegionMatchBeginMF_04026290 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026283 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04026291 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026280, 1, (STRLEN(?templateMotifCigarP08543MF_04026280) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026280, CONCAT('^(?:-*[^-]){', STR(((1112 - ?templateMotifSequenceMatchBeginPositionP08543281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026282, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026282) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026282, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026282) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) . BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_04026283) - 1) AS ?thisPositionOn88) . BIND(?thisPositionOn88 AS ?thisPositionOn89) . BIND(?this AS ?pfs1t294) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb86) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse87) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_04026a85')) AS ?annotation85) . BIND(?this AS ?pfs84) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch299 faldo:location ?templateMotifSequenceMatchRegionP08543300 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543302 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08543MF_04026295 . ?templateMotifSequenceMatchRegionP08543300 faldo:begin ?templateMotifSequenceMatchBeginP08543301 . ?templateMotifSequenceMatchBeginP08543301 faldo:position ?templateMotifSequenceMatchBeginPositionP08543296 ; faldo:reference isoform:P08543-1 . ?templateMotifSequenceProfileAlignmentOperationP08543302 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . ?targetMotifMatch303 faldo:location ?targetMotifMatchRegionMatch304 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026306 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08543MF_04026297 . ?targetMotifMatchRegionMatch304 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026305 . ?targetMotifMatchRegionMatchBeginMF_04026305 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026298 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04026306 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026295, 1, (STRLEN(?templateMotifCigarP08543MF_04026295) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026295, CONCAT('^(?:-*[^-]){', STR(((1132 - ?templateMotifSequenceMatchBeginPositionP08543296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1307) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026297, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026297) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026297, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026297) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), '')))), '[^-]', ''))) AS ?step2308) . BIND(((?step2308 + ?targetMotifMatchRegionMatchBeginPositionMF_04026298) - 1) AS ?thisPositionOn94) . BIND(?thisPositionOn94 AS ?thisPositionOn95) . BIND(?this AS ?pfs1t309) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb92) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse93) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_04026a91')) AS ?annotation91) . BIND(?this AS ?pfs90) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch314 faldo:location ?templateMotifSequenceMatchRegionP08543315 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543317 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08543MF_04026310 . ?templateMotifSequenceMatchRegionP08543315 faldo:begin ?templateMotifSequenceMatchBeginP08543316 . ?templateMotifSequenceMatchBeginP08543316 faldo:position ?templateMotifSequenceMatchBeginPositionP08543311 ; faldo:reference isoform:P08543-1 . ?templateMotifSequenceProfileAlignmentOperationP08543317 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . ?targetMotifMatch318 faldo:location ?targetMotifMatchRegionMatch319 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026321 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08543MF_04026312 . ?targetMotifMatchRegionMatch319 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026320 . ?targetMotifMatchRegionMatchBeginMF_04026320 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026313 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04026321 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026310, 1, (STRLEN(?templateMotifCigarP08543MF_04026310) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026310, CONCAT('^(?:-*[^-]){', STR(((1135 - ?templateMotifSequenceMatchBeginPositionP08543311) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1322) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026312, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026312) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026312, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026312) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), '')))), '[^-]', ''))) AS ?step2323) . BIND(((?step2323 + ?targetMotifMatchRegionMatchBeginPositionMF_04026313) - 1) AS ?thisPositionOn100) . BIND(?thisPositionOn100 AS ?thisPositionOn101) . BIND(?this AS ?pfs1t324) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb98) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse99) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn100, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_04026a97')) AS ?annotation97) . BIND(?this AS ?pfs96) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch329 faldo:location ?templateMotifSequenceMatchRegionP08543330 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543332 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08543MF_04026325 . ?templateMotifSequenceMatchRegionP08543330 faldo:begin ?templateMotifSequenceMatchBeginP08543331 . ?templateMotifSequenceMatchBeginP08543331 faldo:position ?templateMotifSequenceMatchBeginPositionP08543326 ; faldo:reference isoform:P08543-1 . ?templateMotifSequenceProfileAlignmentOperationP08543332 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . ?targetMotifMatch333 faldo:location ?targetMotifMatchRegionMatch334 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026336 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08543MF_04026327 . ?targetMotifMatchRegionMatch334 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026335 . ?targetMotifMatchRegionMatchBeginMF_04026335 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026328 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04026336 edam:has_input signature:MF_04026 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026325, 1, (STRLEN(?templateMotifCigarP08543MF_04026325) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026325, CONCAT('^(?:-*[^-]){', STR(((582 - ?templateMotifSequenceMatchBeginPositionP08543326) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1337) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026327, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026327) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026327, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026327) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), '')))), '[^-]', ''))) AS ?step2338) . BIND(((?step2338 + ?targetMotifMatchRegionMatchBeginPositionMF_04026328) - 1) AS ?thisPositionOn106) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026325, 1, (STRLEN(?templateMotifCigarP08543MF_04026325) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026325, CONCAT('^(?:-*[^-]){', STR(((808 - ?templateMotifSequenceMatchBeginPositionP08543326) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1339) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026327, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026327) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026327, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026327) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), '')))), '[^-]', ''))) AS ?step2340) . BIND(((?step2340 + ?targetMotifMatchRegionMatchBeginPositionMF_04026328) - 1) AS ?thisPositionOn107) . BIND(?this AS ?pfs1t341) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfsb104) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfse105) . FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn106, (?thisPositionOn107 - ?thisPositionOn106)))) . BIND(URI(CONCAT(STR(?this), '#MF_04026a103')) AS ?annotation103) . BIND(?this AS ?pfs102) . } }