CONSTRUCT { _:931493 up:source unirule:MF_04076 . _:931494 up:source unirule:MF_04076 . _:931495 up:source unirule:MF_04076 . _:931496 up:source unirule:MF_04076 . _:931497 up:source unirule:MF_04076 . _:931498 up:source unirule:MF_04076 . _:931499 up:source unirule:MF_04076 . _:931500 up:source unirule:MF_04076 . _:931501 up:source unirule:MF_04076 . _:931502 up:source unirule:MF_04076 . _:931503 up:source unirule:MF_04076 . _:931504 up:source unirule:MF_04076 . _:931505 up:source unirule:MF_04076 . _:931506 up:source unirule:MF_04076 . _:931507 up:source unirule:MF_04076 . _:931508 up:source unirule:MF_04076 . _:931509 up:source unirule:MF_04076 . _:931510 up:source unirule:MF_04076 . _:931511 up:source unirule:MF_04076 . _:931512 up:source unirule:MF_04076 . _:931513 up:source unirule:MF_04076 . _:931514 up:source unirule:MF_04076 . _:931515 up:source unirule:MF_04076 . _:931516 up:source unirule:MF_04076 . _:931517 up:source unirule:MF_04076 . _:931518 up:source unirule:MF_04076 . _:931519 up:source unirule:MF_04076 . _:931520 up:source unirule:MF_04076 . _:931521 up:source unirule:MF_04076 . _:931522 up:source unirule:MF_04076 . _:931523 up:source unirule:MF_04076 . _:931524 up:source unirule:MF_04076 . _:931525 up:source unirule:MF_04076 . _:931526 up:source unirule:MF_04076 . _:931527 up:source unirule:MF_04076 . _:931528 up:source unirule:MF_04076 . _:931529 up:source unirule:MF_04076 . _:931530 up:source unirule:MF_04076 . _:931531 up:source unirule:MF_04076 . ?this up:classifiedWith GO:0005198 , keyword:677 , keyword:945 . ?case0 up:classifiedWith GO:0005576 , GO:0042025 , GO:0052031 , keyword:1015 , keyword:1048 , keyword:732 , keyword:899 , keyword:964 . ?case1 up:classifiedWith GO:0003677 , GO:0003723 , GO:0030430 , GO:0039619 , GO:0046718 , GO:0075521 , GO:0075732 , keyword:1035 , keyword:1144 , keyword:1160 , keyword:1163 , keyword:1176 , keyword:1177 , keyword:167 , keyword:238 , keyword:597 , keyword:694 , keyword:946 . ?pfs2 up:annotation ?annotation3 . ?annotation3 faldo:begin ?pfsb4 ; faldo:end ?pfse5 ; rdf:type up:Region_Annotation ; rdfs:comment 'HBEAG' . ?pfsb4 faldo:position ?thisPositionOn6 ; rdf:type faldo:ExactPosition . ?pfse5 faldo:position ?thisPositionOn7 ; rdf:type faldo:ExactPosition . ?pfs8 up:annotation ?annotation9 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; rdf:type up:Site_Annotation ; rdfs:comment 'Cleavage; by host' . ?pfsb10 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; rdf:type up:Disulfide_Bond_Annotation ; rdfs:comment 'Interchain' . ?pfsb16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; rdf:type up:Disulfide_Bond_Annotation ; rdfs:comment 'Interchain' . ?pfsb22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; rdf:type up:Region_Annotation ; rdfs:comment 'RNA binding' . ?pfsb28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; rdf:type up:Motif_Annotation ; rdfs:comment 'Bipartite nuclear localization signal' . ?pfsb34 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine; by host' . ?pfsb40 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine; by host' . ?pfsb46 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfs50 up:annotation ?annotation51 . ?annotation51 faldo:begin ?pfsb52 ; faldo:end ?pfse53 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine; by host' . ?pfsb52 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfse53 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?sam56 up:classifiedWith keyword:732 . ?signal57 faldo:begin ?signalb58 ; faldo:end ?signale59 . ?signalb58 faldo:position ?signalbp60 . ?signale59 faldo:position ?signalep61 . ?keyword62 up:range ?signal57 . _:931532 a rdf:Statement ; up:attribution _:931493 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:945 . _:931533 a rdf:Statement ; up:attribution _:931494 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:677 . _:931534 a rdf:Statement ; up:attribution _:931495 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005198 . _:931535 a rdf:Statement ; up:attribution _:931496 ; rdf:subject ?case0 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1015 . _:931536 a rdf:Statement ; up:attribution _:931497 ; rdf:subject ?case0 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1048 . _:931537 a rdf:Statement ; up:attribution _:931498 ; rdf:subject ?case0 ; rdf:predicate up:classifiedWith ; rdf:object keyword:964 . _:931538 a rdf:Statement ; up:attribution _:931499 ; rdf:subject ?case0 ; rdf:predicate up:classifiedWith ; rdf:object keyword:732 . _:931539 a rdf:Statement ; up:attribution _:931500 ; rdf:subject ?case0 ; rdf:predicate up:classifiedWith ; rdf:object keyword:899 . _:931540 a rdf:Statement ; up:attribution _:931501 ; rdf:subject ?case0 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005576 . _:931541 a rdf:Statement ; up:attribution _:931502 ; rdf:subject ?case0 ; rdf:predicate up:classifiedWith ; rdf:object GO:0042025 . _:931542 a rdf:Statement ; up:attribution _:931503 ; rdf:subject ?case0 ; rdf:predicate up:classifiedWith ; rdf:object GO:0052031 . _:931543 a rdf:Statement ; up:attribution _:931504 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:167 . _:931544 a rdf:Statement ; up:attribution _:931505 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1176 . _:931545 a rdf:Statement ; up:attribution _:931506 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:238 . _:931546 a rdf:Statement ; up:attribution _:931507 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1035 . _:931547 a rdf:Statement ; up:attribution _:931508 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1177 . _:931548 a rdf:Statement ; up:attribution _:931509 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:597 . _:931549 a rdf:Statement ; up:attribution _:931510 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:931550 a rdf:Statement ; up:attribution _:931511 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1144 . _:931551 a rdf:Statement ; up:attribution _:931512 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1163 . _:931552 a rdf:Statement ; up:attribution _:931513 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:946 . _:931553 a rdf:Statement ; up:attribution _:931514 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1160 . _:931554 a rdf:Statement ; up:attribution _:931515 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0030430 . _:931555 a rdf:Statement ; up:attribution _:931516 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0039619 . _:931556 a rdf:Statement ; up:attribution _:931517 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0003677 . _:931557 a rdf:Statement ; up:attribution _:931518 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0003723 . _:931558 a rdf:Statement ; up:attribution _:931519 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0075521 . _:931559 a rdf:Statement ; up:attribution _:931520 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0046718 . _:931560 a rdf:Statement ; up:attribution _:931521 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0075732 . _:931561 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs2 ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:931562 a rdf:Statement ; up:attribution _:931522 ; rdf:subject ?pfs2 ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:931563 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:931564 a rdf:Statement ; up:attribution _:931523 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:931565 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:931566 a rdf:Statement ; up:attribution _:931524 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:931567 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:931568 a rdf:Statement ; up:attribution _:931525 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:931569 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:931570 a rdf:Statement ; up:attribution _:931526 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:931571 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:931572 a rdf:Statement ; up:attribution _:931527 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:931573 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:931574 a rdf:Statement ; up:attribution _:931528 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:931575 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:931576 a rdf:Statement ; up:attribution _:931529 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:931577 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:931578 a rdf:Statement ; up:attribution _:931530 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:931579 a rdf:Statement ; up:attribution _:931531 ; rdf:subject ?sam56 ; rdf:predicate up:classifiedWith ; rdf:object keyword:732 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04076 #Rule MF_04076 Created by:? on:2017-05-15 Modified by:Catherine Rivoire on:2025-01-14 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04076 . ?thisOrganism rdfs:subClassOf+ taxon:10405 . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionP0C76768 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C76770 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0C767MF_0407663 . ?templateMotifSequenceMatchRegionP0C76768 faldo:begin ?templateMotifSequenceMatchBeginP0C76769 . ?templateMotifSequenceMatchBeginP0C76769 faldo:position ?templateMotifSequenceMatchBeginPositionP0C76764 ; faldo:reference isoform:P0C767-1 . ?templateMotifSequenceProfileAlignmentOperationP0C76770 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0407674 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0C767MF_0407665 . ?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0407673 . ?targetMotifMatchRegionMatchBeginMF_0407673 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0407666 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0407674 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagHBEAG) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C767MF_0407663, 1, (STRLEN(?templateMotifCigarP0C767MF_0407663) - STRLEN(REPLACE(?templateMotifCigarP0C767MF_0407663, CONCAT('^(?:-*[^-]){', STR(((25 - ?templateMotifSequenceMatchBeginPositionP0C76764) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C767MF_0407665, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407665) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407665, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C767MF_0407665, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407665) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407665, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) . BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0407666) - 1) AS ?thisPositionOn6) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C767MF_0407663, 1, (STRLEN(?templateMotifCigarP0C767MF_0407663) - STRLEN(REPLACE(?templateMotifCigarP0C767MF_0407663, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP0C76764) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C767MF_0407665, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407665) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407665, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C767MF_0407665, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407665) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407665, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) . BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0407666) - 1) AS ?thisPositionOn7) . BIND(?this AS ?pfs1t79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn6))) AS ?pfsb4) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn7))) AS ?pfse5) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn6, (?thisPositionOn7 - ?thisPositionOn6)) = 'GWL')) . BIND(URI(CONCAT(STR(?this), '#MF_04076a3')) AS ?annotation3) . BIND(?this AS ?pfs2) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionP0C76785 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C76787 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0C767MF_0407680 . ?templateMotifSequenceMatchRegionP0C76785 faldo:begin ?templateMotifSequenceMatchBeginP0C76786 . ?templateMotifSequenceMatchBeginP0C76786 faldo:position ?templateMotifSequenceMatchBeginPositionP0C76781 ; faldo:reference isoform:P0C767-1 . ?templateMotifSequenceProfileAlignmentOperationP0C76787 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0407691 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0C767MF_0407682 . ?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0407690 . ?targetMotifMatchRegionMatchBeginMF_0407690 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0407683 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0407691 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C767MF_0407680, 1, (STRLEN(?templateMotifCigarP0C767MF_0407680) - STRLEN(REPLACE(?templateMotifCigarP0C767MF_0407680, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionP0C76781) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C767MF_0407682, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407682) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407682, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C767MF_0407682, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407682) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407682, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) . BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0407683) - 1) AS ?thisPositionOn12) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C767MF_0407680, 1, (STRLEN(?templateMotifCigarP0C767MF_0407680) - STRLEN(REPLACE(?templateMotifCigarP0C767MF_0407680, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionP0C76781) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C767MF_0407682, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407682) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407682, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C767MF_0407682, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407682) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407682, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) . BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0407683) - 1) AS ?thisPositionOn13) . BIND(?this AS ?pfs2t96) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)) = 'RS')) . BIND(URI(CONCAT(STR(?this), '#MF_04076a9')) AS ?annotation9) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch101 faldo:location ?templateMotifSequenceMatchRegionP0C767102 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C767104 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0C767MF_0407697 . ?templateMotifSequenceMatchRegionP0C767102 faldo:begin ?templateMotifSequenceMatchBeginP0C767103 . ?templateMotifSequenceMatchBeginP0C767103 faldo:position ?templateMotifSequenceMatchBeginPositionP0C76798 ; faldo:reference isoform:P0C767-1 . ?templateMotifSequenceProfileAlignmentOperationP0C767104 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch105 faldo:location ?targetMotifMatchRegionMatch106 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04076108 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0C767MF_0407699 . ?targetMotifMatchRegionMatch106 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04076107 . ?targetMotifMatchRegionMatchBeginMF_04076107 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04076100 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04076108 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C767MF_0407697, 1, (STRLEN(?templateMotifCigarP0C767MF_0407697) - STRLEN(REPLACE(?templateMotifCigarP0C767MF_0407697, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionP0C76798) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C767MF_0407699, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407699) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407699, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C767MF_0407699, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407699) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407699, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) . BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_04076100) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs2t111) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_04076a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionP0C767117 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C767119 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0C767MF_04076112 . ?templateMotifSequenceMatchRegionP0C767117 faldo:begin ?templateMotifSequenceMatchBeginP0C767118 . ?templateMotifSequenceMatchBeginP0C767118 faldo:position ?templateMotifSequenceMatchBeginPositionP0C767113 ; faldo:reference isoform:P0C767-1 . ?templateMotifSequenceProfileAlignmentOperationP0C767119 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04076123 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0C767MF_04076114 . ?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04076122 . ?targetMotifMatchRegionMatchBeginMF_04076122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04076115 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04076123 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C767MF_04076112, 1, (STRLEN(?templateMotifCigarP0C767MF_04076112) - STRLEN(REPLACE(?templateMotifCigarP0C767MF_04076112, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionP0C767113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C767MF_04076114, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_04076114) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_04076114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C767MF_04076114, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_04076114) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_04076114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) . BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_04076115) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs2t126) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_04076a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionQ76R61132 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R61134 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ76R61MF_04076127 . ?templateMotifSequenceMatchRegionQ76R61132 faldo:begin ?templateMotifSequenceMatchBeginQ76R61133 . ?templateMotifSequenceMatchBeginQ76R61133 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R61128 ; faldo:reference isoform:Q76R61-1 . ?templateMotifSequenceProfileAlignmentOperationQ76R61134 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04076138 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ76R61MF_04076129 . ?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04076137 . ?targetMotifMatchRegionMatchBeginMF_04076137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04076130 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04076138 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R61MF_04076127, 1, (STRLEN(?templateMotifCigarQ76R61MF_04076127) - STRLEN(REPLACE(?templateMotifCigarQ76R61MF_04076127, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionQ76R61128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076129, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076129) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076129, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076129) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) . BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_04076130) - 1) AS ?thisPositionOn30) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R61MF_04076127, 1, (STRLEN(?templateMotifCigarQ76R61MF_04076127) - STRLEN(REPLACE(?templateMotifCigarQ76R61MF_04076127, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionQ76R61128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076129, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076129) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076129, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076129) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) . BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_04076130) - 1) AS ?thisPositionOn31) . BIND(?this AS ?pfs3t143) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) . FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) . BIND(URI(CONCAT(STR(?this), '#MF_04076a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionQ76R61149 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R61151 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ76R61MF_04076144 . ?templateMotifSequenceMatchRegionQ76R61149 faldo:begin ?templateMotifSequenceMatchBeginQ76R61150 . ?templateMotifSequenceMatchBeginQ76R61150 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R61145 ; faldo:reference isoform:Q76R61-1 . ?templateMotifSequenceProfileAlignmentOperationQ76R61151 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04076155 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ76R61MF_04076146 . ?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04076154 . ?targetMotifMatchRegionMatchBeginMF_04076154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04076147 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04076155 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R61MF_04076144, 1, (STRLEN(?templateMotifCigarQ76R61MF_04076144) - STRLEN(REPLACE(?templateMotifCigarQ76R61MF_04076144, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionQ76R61145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076146, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076146) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076146, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076146) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) . BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_04076147) - 1) AS ?thisPositionOn36) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R61MF_04076144, 1, (STRLEN(?templateMotifCigarQ76R61MF_04076144) - STRLEN(REPLACE(?templateMotifCigarQ76R61MF_04076144, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionQ76R61145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076146, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076146) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076146, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076146) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) . BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_04076147) - 1) AS ?thisPositionOn37) . BIND(?this AS ?pfs3t160) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) . FILTER ((BOUND(?thisPositionOn36) && BOUND(?thisPositionOn37))) . BIND(URI(CONCAT(STR(?this), '#MF_04076a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionQ76R61166 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R61168 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ76R61MF_04076161 . ?templateMotifSequenceMatchRegionQ76R61166 faldo:begin ?templateMotifSequenceMatchBeginQ76R61167 . ?templateMotifSequenceMatchBeginQ76R61167 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R61162 ; faldo:reference isoform:Q76R61-1 . ?templateMotifSequenceProfileAlignmentOperationQ76R61168 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04076172 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ76R61MF_04076163 . ?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04076171 . ?targetMotifMatchRegionMatchBeginMF_04076171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04076164 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04076172 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R61MF_04076161, 1, (STRLEN(?templateMotifCigarQ76R61MF_04076161) - STRLEN(REPLACE(?templateMotifCigarQ76R61MF_04076161, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionQ76R61162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076163, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076163) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076163, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076163) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) . BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_04076164) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs3t175) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_04076a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionQ76R61181 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R61183 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ76R61MF_04076176 . ?templateMotifSequenceMatchRegionQ76R61181 faldo:begin ?templateMotifSequenceMatchBeginQ76R61182 . ?templateMotifSequenceMatchBeginQ76R61182 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R61177 ; faldo:reference isoform:Q76R61-1 . ?templateMotifSequenceProfileAlignmentOperationQ76R61183 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04076187 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ76R61MF_04076178 . ?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04076186 . ?targetMotifMatchRegionMatchBeginMF_04076186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04076179 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04076187 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R61MF_04076176, 1, (STRLEN(?templateMotifCigarQ76R61MF_04076176) - STRLEN(REPLACE(?templateMotifCigarQ76R61MF_04076176, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionQ76R61177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076178, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076178) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076178, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076178) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) . BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_04076179) - 1) AS ?thisPositionOn48) . BIND(?thisPositionOn48 AS ?thisPositionOn49) . BIND(?this AS ?pfs3t190) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_04076a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionQ76R61196 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R61198 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ76R61MF_04076191 . ?templateMotifSequenceMatchRegionQ76R61196 faldo:begin ?templateMotifSequenceMatchBeginQ76R61197 . ?templateMotifSequenceMatchBeginQ76R61197 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R61192 ; faldo:reference isoform:Q76R61-1 . ?templateMotifSequenceProfileAlignmentOperationQ76R61198 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04076202 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ76R61MF_04076193 . ?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04076201 . ?targetMotifMatchRegionMatchBeginMF_04076201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04076194 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04076202 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R61MF_04076191, 1, (STRLEN(?templateMotifCigarQ76R61MF_04076191) - STRLEN(REPLACE(?templateMotifCigarQ76R61MF_04076191, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionQ76R61192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076193, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076193) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076193, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076193) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) . BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_04076194) - 1) AS ?thisPositionOn54) . BIND(?thisPositionOn54 AS ?thisPositionOn55) . BIND(?this AS ?pfs3t205) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse53) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_04076a51')) AS ?annotation51) . BIND(?this AS ?pfs50) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag206) . } BIND(IF(BOUND(?tagHBEAG), ?caseWithTag206, ?UNBOUND_VARIABLE) AS ?case0) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag207) . } BIND(IF(BOUND(?tagHBEAG), ?caseWithTag207, ?UNBOUND_VARIABLE) AS ?case1) . OPTIONAL { ?this up:annotation ?samsignal208 ; up:sequence ?thisSequence . ?samsignal208 up:range ?samsignalr209 ; rdf:type up:Signal_Peptide_Annotation . ?samsignalr209 faldo:begin ?samsignalb210 ; faldo:end ?samsignale211 . ?samsignalb210 faldo:position ?samsignalbp212 ; faldo:reference ?thisSequence . ?samsignale211 faldo:position ?samsignalep213 ; faldo:reference ?thisSequence . BIND(?this AS ?sam56) . } BIND(URI(CONCAT(STR(?this), '#MF_04076a62')) AS ?keyword62) . }