CONSTRUCT { _:949156 up:source unirule:MF_04097 . _:949157 up:source unirule:MF_04097 . _:949158 up:source unirule:MF_04097 . _:949159 up:source unirule:MF_04097 . _:949160 up:source unirule:MF_04097 . _:949161 up:source unirule:MF_04097 . _:949162 up:source unirule:MF_04097 . _:949163 up:source unirule:MF_04097 . _:949164 up:source unirule:MF_04097 . _:949165 up:source unirule:MF_04097 . _:949166 up:source unirule:MF_04097 . _:949167 up:source unirule:MF_04097 . _:949168 up:source unirule:MF_04097 . _:949169 up:source unirule:MF_04097 . _:949170 up:source unirule:MF_04097 . _:949171 up:source unirule:MF_04097 . _:949172 up:source unirule:MF_04097 . _:949173 up:source unirule:MF_04097 . _:949174 up:source unirule:MF_04097 . _:949175 up:source unirule:MF_04097 . _:949176 up:source unirule:MF_04097 . _:949177 up:source unirule:MF_04097 . _:949178 up:source unirule:MF_04097 . _:949179 up:source unirule:MF_04097 . _:949180 up:source unirule:MF_04097 . _:949181 up:source unirule:MF_04097 . _:949182 up:source unirule:MF_04097 . _:949183 up:source unirule:MF_04097 . _:949184 up:source unirule:MF_04097 . _:949185 up:source unirule:MF_04097 . _:949186 up:source unirule:MF_04097 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation5 , ?annotation9 , ?annotation10 , ?annotation11 ; up:classifiedWith GO:0003723 , GO:0019013 , GO:0044172 , GO:0044177 , keyword:1015 , keyword:1040 , keyword:13 , keyword:543 , keyword:597 , keyword:687 , keyword:694 , keyword:804 , keyword:805 , keyword:946 ; up:recommendedName ?name0 . ?name0 up:fullName 'Nucleoprotein' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Nucleocapsid protein' ; up:shortName 'NC' , 'Protein N' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'N' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Packages the positive strand viral genome RNA into a helical ribonucleocapsid (RNP) and plays a fundamental role during virion assembly through its interactions with the viral genome and membrane protein M. Plays an important role in enhancing the efficiency of subgenomic viral RNA transcription as well as viral replication.' . ?annotation4 a up:Subunit_Annotation ; rdfs:comment 'Homooligomer. Both monomeric and oligomeric forms interact with RNA. Interacts with protein M. Interacts with NSP3; this interaction serves to tether the genome to the newly translated replicase-transcriptase complex at a very early stage of infection.' . ?annotation5 a up:Subcellular_Location_Annotation ; rdfs:comment 'Located inside the virion, complexed with the viral RNA. Probably associates with ER-derived membranes where it participates in viral RNA synthesis and virus budding' . ?annotation5li6 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation5li7 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation5li8 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation9 a up:PTM_Annotation ; rdfs:comment 'ADP-ribosylated. The ADP-ribosylation is retained in the virion during infection.' . ?annotation10 a up:PTM_Annotation ; rdfs:comment 'Phosphorylated on serine and threonine residues.' . ?annotation11 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the gammacoronavirus nucleocapsid protein family.' . ?pfs12 up:annotation ?annotation13 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; rdf:type up:Region_Annotation ; rdfs:comment 'RNA-binding' . ?pfsb14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfs18 up:annotation ?annotation19 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; rdf:type up:Region_Annotation ; rdfs:comment 'Dimerization' . ?pfsb20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfs24 up:annotation ?annotation25 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine; by host' . ?pfsb26 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine; by host' . ?pfsb32 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphothreonine; by host' . ?pfsb38 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfs42 up:annotation ?annotation43 . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine; by host' . ?pfsb44 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?pfs48 up:annotation ?annotation49 . ?annotation49 faldo:begin ?pfsb50 ; faldo:end ?pfse51 ; rdf:type up:Disulfide_Bond_Annotation . ?pfsb50 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse51 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; rdf:type up:Disulfide_Bond_Annotation . ?pfsb56 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . _:949187 a rdf:Statement ; up:attribution _:949156 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:949188 a rdf:Statement ; up:attribution _:949157 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:949189 a rdf:Statement ; up:attribution _:949158 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:949190 a rdf:Statement ; up:attribution _:949159 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:949191 a rdf:Statement ; up:attribution _:949160 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:949192 a rdf:Statement ; up:attribution _:949161 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:949193 a rdf:Statement ; up:attribution _:949162 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:949194 a rdf:Statement ; up:attribution _:949163 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:949195 a rdf:Statement ; up:attribution _:949164 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:949196 a rdf:Statement ; up:attribution _:949165 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:13 . _:949197 a rdf:Statement ; up:attribution _:949166 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1015 . _:949198 a rdf:Statement ; up:attribution _:949167 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1040 . _:949199 a rdf:Statement ; up:attribution _:949168 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:597 . _:949200 a rdf:Statement ; up:attribution _:949169 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:687 . _:949201 a rdf:Statement ; up:attribution _:949170 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:949202 a rdf:Statement ; up:attribution _:949171 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:804 . _:949203 a rdf:Statement ; up:attribution _:949172 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:805 . _:949204 a rdf:Statement ; up:attribution _:949173 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:543 . _:949205 a rdf:Statement ; up:attribution _:949174 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:946 . _:949206 a rdf:Statement ; up:attribution _:949175 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0044172 . _:949207 a rdf:Statement ; up:attribution _:949176 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0044177 . _:949208 a rdf:Statement ; up:attribution _:949177 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019013 . _:949209 a rdf:Statement ; up:attribution _:949178 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003723 . _:949210 a rdf:Statement ; up:source unirule:MF_04097 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:949211 a rdf:Statement ; up:attribution _:949179 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:949212 a rdf:Statement ; up:source unirule:MF_04097 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:949213 a rdf:Statement ; up:attribution _:949180 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:949214 a rdf:Statement ; up:source unirule:MF_04097 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:949215 a rdf:Statement ; up:attribution _:949181 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:949216 a rdf:Statement ; up:source unirule:MF_04097 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:949217 a rdf:Statement ; up:attribution _:949182 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:949218 a rdf:Statement ; up:source unirule:MF_04097 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:949219 a rdf:Statement ; up:attribution _:949183 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:949220 a rdf:Statement ; up:source unirule:MF_04097 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:949221 a rdf:Statement ; up:attribution _:949184 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:949222 a rdf:Statement ; up:source unirule:MF_04097 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:949223 a rdf:Statement ; up:attribution _:949185 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:949224 a rdf:Statement ; up:source unirule:MF_04097 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:949225 a rdf:Statement ; up:attribution _:949186 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04097 #Rule MF_04097 Created by:? on:2018-03-19 Modified by:ipedruzz on:2021-03-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04097 . ?thisOrganism rdfs:subClassOf+ taxon:694013 . BIND(URI(CONCAT(STR(?this), '#MF_04097a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_04097a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_04097a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_04097a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_04097a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_04097a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_04097a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_04097a11')) AS ?annotation11) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch64 faldo:location ?templateMotifSequenceMatchRegionP6959665 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6959667 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69596MF_0409760 . ?templateMotifSequenceMatchRegionP6959665 faldo:begin ?templateMotifSequenceMatchBeginP6959666 . ?templateMotifSequenceMatchBeginP6959666 faldo:position ?templateMotifSequenceMatchBeginPositionP6959661 ; faldo:reference isoform:P69596-1 . ?templateMotifSequenceProfileAlignmentOperationP6959667 edam:has_input signature:MF_04097 ; rdf:type edam:operation_0300 . ?targetMotifMatch68 faldo:location ?targetMotifMatchRegionMatch69 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0409771 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69596MF_0409762 . ?targetMotifMatchRegionMatch69 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0409770 . ?targetMotifMatchRegionMatchBeginMF_0409770 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0409763 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0409771 edam:has_input signature:MF_04097 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69596MF_0409760, 1, (STRLEN(?templateMotifCigarP69596MF_0409760) - STRLEN(REPLACE(?templateMotifCigarP69596MF_0409760, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionP6959661) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69596MF_0409762, 1, (STRLEN(?targetMotifMatchCigarP69596MF_0409762) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_0409762, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69596MF_0409762, 1, (STRLEN(?targetMotifMatchCigarP69596MF_0409762) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_0409762, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) . BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0409763) - 1) AS ?thisPositionOn16) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69596MF_0409760, 1, (STRLEN(?templateMotifCigarP69596MF_0409760) - STRLEN(REPLACE(?templateMotifCigarP69596MF_0409760, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionP6959661) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69596MF_0409762, 1, (STRLEN(?targetMotifMatchCigarP69596MF_0409762) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_0409762, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69596MF_0409762, 1, (STRLEN(?targetMotifMatchCigarP69596MF_0409762) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_0409762, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) . BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0409763) - 1) AS ?thisPositionOn17) . BIND(?this AS ?pfs1t76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) . FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) . BIND(URI(CONCAT(STR(?this), '#MF_04097a13')) AS ?annotation13) . BIND(?this AS ?pfs12) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionP6959682 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6959684 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69596MF_0409777 . ?templateMotifSequenceMatchRegionP6959682 faldo:begin ?templateMotifSequenceMatchBeginP6959683 . ?templateMotifSequenceMatchBeginP6959683 faldo:position ?templateMotifSequenceMatchBeginPositionP6959678 ; faldo:reference isoform:P69596-1 . ?templateMotifSequenceProfileAlignmentOperationP6959684 edam:has_input signature:MF_04097 ; rdf:type edam:operation_0300 . ?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0409788 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69596MF_0409779 . ?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0409787 . ?targetMotifMatchRegionMatchBeginMF_0409787 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0409780 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0409788 edam:has_input signature:MF_04097 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69596MF_0409777, 1, (STRLEN(?templateMotifCigarP69596MF_0409777) - STRLEN(REPLACE(?templateMotifCigarP69596MF_0409777, CONCAT('^(?:-*[^-]){', STR(((226 - ?templateMotifSequenceMatchBeginPositionP6959678) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69596MF_0409779, 1, (STRLEN(?targetMotifMatchCigarP69596MF_0409779) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_0409779, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69596MF_0409779, 1, (STRLEN(?targetMotifMatchCigarP69596MF_0409779) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_0409779, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) . BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0409780) - 1) AS ?thisPositionOn22) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69596MF_0409777, 1, (STRLEN(?templateMotifCigarP69596MF_0409777) - STRLEN(REPLACE(?templateMotifCigarP69596MF_0409777, CONCAT('^(?:-*[^-]){', STR(((333 - ?templateMotifSequenceMatchBeginPositionP6959678) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69596MF_0409779, 1, (STRLEN(?targetMotifMatchCigarP69596MF_0409779) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_0409779, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69596MF_0409779, 1, (STRLEN(?targetMotifMatchCigarP69596MF_0409779) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_0409779, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) . BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0409780) - 1) AS ?thisPositionOn23) . BIND(?this AS ?pfs1t93) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) . FILTER ((BOUND(?thisPositionOn22) && BOUND(?thisPositionOn23))) . BIND(URI(CONCAT(STR(?this), '#MF_04097a19')) AS ?annotation19) . BIND(?this AS ?pfs18) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP6959699 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69596101 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69596MF_0409794 . ?templateMotifSequenceMatchRegionP6959699 faldo:begin ?templateMotifSequenceMatchBeginP69596100 . ?templateMotifSequenceMatchBeginP69596100 faldo:position ?templateMotifSequenceMatchBeginPositionP6959695 ; faldo:reference isoform:P69596-1 . ?templateMotifSequenceProfileAlignmentOperationP69596101 edam:has_input signature:MF_04097 ; rdf:type edam:operation_0300 . ?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04097105 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69596MF_0409796 . ?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04097104 . ?targetMotifMatchRegionMatchBeginMF_04097104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0409797 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04097105 edam:has_input signature:MF_04097 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69596MF_0409794, 1, (STRLEN(?templateMotifCigarP69596MF_0409794) - STRLEN(REPLACE(?templateMotifCigarP69596MF_0409794, CONCAT('^(?:-*[^-]){', STR(((190 - ?templateMotifSequenceMatchBeginPositionP6959695) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69596MF_0409796, 1, (STRLEN(?targetMotifMatchCigarP69596MF_0409796) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_0409796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69596MF_0409796, 1, (STRLEN(?targetMotifMatchCigarP69596MF_0409796) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_0409796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) . BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0409797) - 1) AS ?thisPositionOn28) . BIND(?thisPositionOn28 AS ?thisPositionOn29) . BIND(?this AS ?pfs1t108) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_04097a25')) AS ?annotation25) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP69596114 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69596116 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69596MF_04097109 . ?templateMotifSequenceMatchRegionP69596114 faldo:begin ?templateMotifSequenceMatchBeginP69596115 . ?templateMotifSequenceMatchBeginP69596115 faldo:position ?templateMotifSequenceMatchBeginPositionP69596110 ; faldo:reference isoform:P69596-1 . ?templateMotifSequenceProfileAlignmentOperationP69596116 edam:has_input signature:MF_04097 ; rdf:type edam:operation_0300 . ?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04097120 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69596MF_04097111 . ?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04097119 . ?targetMotifMatchRegionMatchBeginMF_04097119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04097112 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04097120 edam:has_input signature:MF_04097 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69596MF_04097109, 1, (STRLEN(?templateMotifCigarP69596MF_04097109) - STRLEN(REPLACE(?templateMotifCigarP69596MF_04097109, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionP69596110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69596MF_04097111, 1, (STRLEN(?targetMotifMatchCigarP69596MF_04097111) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_04097111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69596MF_04097111, 1, (STRLEN(?targetMotifMatchCigarP69596MF_04097111) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_04097111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) . BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_04097112) - 1) AS ?thisPositionOn34) . BIND(?thisPositionOn34 AS ?thisPositionOn35) . BIND(?this AS ?pfs1t123) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_04097a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionP69596129 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69596131 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69596MF_04097124 . ?templateMotifSequenceMatchRegionP69596129 faldo:begin ?templateMotifSequenceMatchBeginP69596130 . ?templateMotifSequenceMatchBeginP69596130 faldo:position ?templateMotifSequenceMatchBeginPositionP69596125 ; faldo:reference isoform:P69596-1 . ?templateMotifSequenceProfileAlignmentOperationP69596131 edam:has_input signature:MF_04097 ; rdf:type edam:operation_0300 . ?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04097135 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69596MF_04097126 . ?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04097134 . ?targetMotifMatchRegionMatchBeginMF_04097134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04097127 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04097135 edam:has_input signature:MF_04097 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69596MF_04097124, 1, (STRLEN(?templateMotifCigarP69596MF_04097124) - STRLEN(REPLACE(?templateMotifCigarP69596MF_04097124, CONCAT('^(?:-*[^-]){', STR(((378 - ?templateMotifSequenceMatchBeginPositionP69596125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69596MF_04097126, 1, (STRLEN(?targetMotifMatchCigarP69596MF_04097126) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_04097126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69596MF_04097126, 1, (STRLEN(?targetMotifMatchCigarP69596MF_04097126) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_04097126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) . BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_04097127) - 1) AS ?thisPositionOn40) . BIND(?thisPositionOn40 AS ?thisPositionOn41) . BIND(?this AS ?pfs1t138) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_04097a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionP69596144 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69596146 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69596MF_04097139 . ?templateMotifSequenceMatchRegionP69596144 faldo:begin ?templateMotifSequenceMatchBeginP69596145 . ?templateMotifSequenceMatchBeginP69596145 faldo:position ?templateMotifSequenceMatchBeginPositionP69596140 ; faldo:reference isoform:P69596-1 . ?templateMotifSequenceProfileAlignmentOperationP69596146 edam:has_input signature:MF_04097 ; rdf:type edam:operation_0300 . ?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04097150 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69596MF_04097141 . ?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04097149 . ?targetMotifMatchRegionMatchBeginMF_04097149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04097142 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04097150 edam:has_input signature:MF_04097 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69596MF_04097139, 1, (STRLEN(?templateMotifCigarP69596MF_04097139) - STRLEN(REPLACE(?templateMotifCigarP69596MF_04097139, CONCAT('^(?:-*[^-]){', STR(((379 - ?templateMotifSequenceMatchBeginPositionP69596140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69596MF_04097141, 1, (STRLEN(?targetMotifMatchCigarP69596MF_04097141) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_04097141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69596MF_04097141, 1, (STRLEN(?targetMotifMatchCigarP69596MF_04097141) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_04097141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) . BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_04097142) - 1) AS ?thisPositionOn46) . BIND(?thisPositionOn46 AS ?thisPositionOn47) . BIND(?this AS ?pfs1t153) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_04097a43')) AS ?annotation43) . BIND(?this AS ?pfs42) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP69596159 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69596161 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69596MF_04097154 . ?templateMotifSequenceMatchRegionP69596159 faldo:begin ?templateMotifSequenceMatchBeginP69596160 . ?templateMotifSequenceMatchBeginP69596160 faldo:position ?templateMotifSequenceMatchBeginPositionP69596155 ; faldo:reference isoform:P69596-1 . ?templateMotifSequenceProfileAlignmentOperationP69596161 edam:has_input signature:MF_04097 ; rdf:type edam:operation_0300 . ?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04097165 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69596MF_04097156 . ?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04097164 . ?targetMotifMatchRegionMatchBeginMF_04097164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04097157 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04097165 edam:has_input signature:MF_04097 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69596MF_04097154, 1, (STRLEN(?templateMotifCigarP69596MF_04097154) - STRLEN(REPLACE(?templateMotifCigarP69596MF_04097154, CONCAT('^(?:-*[^-]){', STR(((281 - ?templateMotifSequenceMatchBeginPositionP69596155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69596MF_04097156, 1, (STRLEN(?targetMotifMatchCigarP69596MF_04097156) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_04097156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69596MF_04097156, 1, (STRLEN(?targetMotifMatchCigarP69596MF_04097156) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_04097156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) . BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_04097157) - 1) AS ?thisPositionOn52) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69596MF_04097154, 1, (STRLEN(?templateMotifCigarP69596MF_04097154) - STRLEN(REPLACE(?templateMotifCigarP69596MF_04097154, CONCAT('^(?:-*[^-]){', STR(((308 - ?templateMotifSequenceMatchBeginPositionP69596155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69596MF_04097156, 1, (STRLEN(?targetMotifMatchCigarP69596MF_04097156) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_04097156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69596MF_04097156, 1, (STRLEN(?targetMotifMatchCigarP69596MF_04097156) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_04097156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) . BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_04097157) - 1) AS ?thisPositionOn53) . BIND(?this AS ?pfs1t170) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse51) . FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn52, (?thisPositionOn53 - ?thisPositionOn52)))) . BIND(URI(CONCAT(STR(?this), '#MF_04097a49')) AS ?annotation49) . BIND(?this AS ?pfs48) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionP69596176 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69596178 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69596MF_04097171 . ?templateMotifSequenceMatchRegionP69596176 faldo:begin ?templateMotifSequenceMatchBeginP69596177 . ?templateMotifSequenceMatchBeginP69596177 faldo:position ?templateMotifSequenceMatchBeginPositionP69596172 ; faldo:reference isoform:P69596-1 . ?templateMotifSequenceProfileAlignmentOperationP69596178 edam:has_input signature:MF_04097 ; rdf:type edam:operation_0300 . ?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04097182 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69596MF_04097173 . ?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04097181 . ?targetMotifMatchRegionMatchBeginMF_04097181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04097174 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04097182 edam:has_input signature:MF_04097 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69596MF_04097171, 1, (STRLEN(?templateMotifCigarP69596MF_04097171) - STRLEN(REPLACE(?templateMotifCigarP69596MF_04097171, CONCAT('^(?:-*[^-]){', STR(((320 - ?templateMotifSequenceMatchBeginPositionP69596172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69596MF_04097173, 1, (STRLEN(?targetMotifMatchCigarP69596MF_04097173) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_04097173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69596MF_04097173, 1, (STRLEN(?targetMotifMatchCigarP69596MF_04097173) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_04097173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) . BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_04097174) - 1) AS ?thisPositionOn58) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69596MF_04097171, 1, (STRLEN(?templateMotifCigarP69596MF_04097171) - STRLEN(REPLACE(?templateMotifCigarP69596MF_04097171, CONCAT('^(?:-*[^-]){', STR(((323 - ?templateMotifSequenceMatchBeginPositionP69596172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69596MF_04097173, 1, (STRLEN(?targetMotifMatchCigarP69596MF_04097173) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_04097173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69596MF_04097173, 1, (STRLEN(?targetMotifMatchCigarP69596MF_04097173) - STRLEN(REPLACE(?targetMotifMatchCigarP69596MF_04097173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) . BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_04097174) - 1) AS ?thisPositionOn59) . BIND(?this AS ?pfs1t187) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse57) . FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn58, (?thisPositionOn59 - ?thisPositionOn58)))) . BIND(URI(CONCAT(STR(?this), '#MF_04097a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } }