CONSTRUCT { _:958553 up:source unirule:MF_04140 . _:958554 up:source unirule:MF_04140 . _:958555 up:source unirule:MF_04140 . _:958556 up:source unirule:MF_04140 . _:958557 up:source unirule:MF_04140 . _:958558 up:source unirule:MF_04140 . _:958559 up:source unirule:MF_04140 . _:958560 up:source unirule:MF_04140 . _:958561 up:source unirule:MF_04140 . _:958562 up:source unirule:MF_04140 . _:958563 up:source unirule:MF_04140 . _:958564 up:source unirule:MF_04140 . _:958565 up:source unirule:MF_04140 . _:958566 up:source unirule:MF_04140 . _:958567 up:source unirule:MF_04140 . _:958568 up:source unirule:MF_04140 . _:958569 up:source unirule:MF_04140 . _:958570 up:source unirule:MF_04140 . _:958571 up:source unirule:MF_04140 . _:958572 up:source unirule:MF_04140 . _:958573 up:source unirule:MF_04140 . _:958574 up:source unirule:MF_04140 . _:958575 up:source unirule:MF_04140 . _:958576 up:source unirule:MF_04140 . _:958577 up:source unirule:MF_04140 . _:958578 up:source unirule:MF_04140 . _:958579 up:source unirule:MF_04140 . _:958580 up:source unirule:MF_04140 . _:958581 up:source unirule:MF_04140 . _:958582 up:source unirule:MF_04140 . _:958583 up:source unirule:MF_04140 . _:958584 up:source unirule:MF_04140 . _:958585 up:source unirule:MF_04140 . _:958586 up:source unirule:MF_04140 . _:958587 up:source unirule:MF_04140 . _:958588 up:source unirule:MF_04140 . _:958589 up:source unirule:MF_04140 . ?this up:alternativeName ?name1 , ?name2 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 ; up:classifiedWith GO:0003677 , GO:0008409 , GO:0017108 , GO:0033567 , GO:0039693 , GO:0046872 , keyword:1194 , keyword:235 , keyword:238 , keyword:244 , keyword:255 , keyword:269 , keyword:378 , keyword:460 , keyword:479 , keyword:540 ; up:recommendedName ?name0 . ?name0 up:ecName '3.1.11.-' ; up:fullName 'Flap endonuclease' ; up:shortName 'FEN' ; rdf:type up:Structured_Name . ?name1 up:fullName "5'-3' exonuclease" ; rdf:type up:Structured_Name . ?name2 up:ecName '3.1.11.3' ; up:fullName 'Exodeoxyribonuclease' ; rdf:type up:Structured_Name . ?annotation3 a up:Function_Annotation ; rdfs:comment "Catalyzes both the 5'-exonucleolytic and structure-specific endonucleolytic hydrolysis of DNA branched nucleic acid molecules and probably plays a role in viral genome replication. Active on flap (branched duplex DNA containing a free single-stranded 5'-end), 5'overhangs and pseudo-Y structures. The substrates require a free, single-stranded 5' end, with endonucleolytic hydrolysis occurring at the junction of double- and single-stranded DNA. This function may be used for example to trim such branched molecules generated by Okazaki fragments synthesis during replication." . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:enzymeClass <http://purl.uniprot.org/enzyme/3.1.11.3>. ?annotation6 a up:Domain_Annotation ; rdfs:comment "Three alpha-helices form a helical arch which forms a hole in the protein and through which the 5' flap of the scissile ssDNA is threaded." . ?case7 up:classifiedWith keyword:630 . ?pfs10 up:annotation ?annotation11 , ?annotation17 , ?annotation23 . ?annotation11 faldo:begin ?pfsb12 ; faldo:end ?pfse13 ; up:ligand ?ligand14 ; rdf:type up:Binding_Site_Annotation . ?pfsb12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?ligand14 rdfs:subClassOf chebi:18420 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:18420 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; up:ligand ?ligand26 ; rdf:type up:Binding_Site_Annotation . ?pfsb24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?ligand26 rdfs:subClassOf chebi:18420 . ?pfs29 up:annotation ?annotation30 , ?annotation36 . ?annotation30 faldo:begin ?pfsb31 ; faldo:end ?pfse32 ; up:ligand ?ligand33 ; rdf:type up:Binding_Site_Annotation . ?pfsb31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?ligand33 rdfs:subClassOf chebi:29103 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; up:ligand ?ligand39 ; rdf:type up:Binding_Site_Annotation . ?pfsb37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?ligand39 rdfs:subClassOf chebi:29103 . ?pfs42 up:annotation ?annotation43 . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; rdf:type up:Chain_Annotation ; rdfs:comment 'Flap endonuclease' . ?pfsb44 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?pfs48 up:annotation ?annotation49 . ?annotation49 faldo:begin ?pfsb50 ; faldo:end ?pfse51 ; rdf:type up:Domain_Extent_Annotation ; rdfs:comment "5'-3' exonuclease" . ?pfsb50 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse51 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; rdf:type up:Region_Annotation ; rdfs:comment 'Helical arch' . ?pfsb56 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfs60 up:annotation ?annotation61 . ?annotation61 faldo:begin ?pfsb62 ; faldo:end ?pfse63 ; rdf:type up:Region_Annotation ; rdfs:comment 'DNA-binding; H3TH' . ?pfsb62 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?pfse63 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?pfs66 up:annotation ?annotation67 . ?annotation67 faldo:begin ?pfsb68 ; faldo:end ?pfse69 ; up:ligand ?ligand70 ; rdf:type up:Binding_Site_Annotation . ?pfsb68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?pfse69 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?ligand70 rdfs:subClassOf chebi:18420 . ?pfs73 up:annotation ?annotation74 . ?annotation74 faldo:begin ?pfsb75 ; faldo:end ?pfse76 ; up:ligand ?ligand77 ; rdf:type up:Binding_Site_Annotation . ?pfsb75 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?pfse76 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?ligand77 rdfs:subClassOf chebi:18420 . ?pfs80 up:annotation ?annotation81 . ?annotation81 faldo:begin ?pfsb82 ; faldo:end ?pfse83 ; up:ligand ?ligand84 ; rdf:type up:Binding_Site_Annotation . ?pfsb82 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?pfse83 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . ?ligand84 rdfs:subClassOf chebi:18420 . ?pfs87 up:annotation ?annotation88 . ?annotation88 faldo:begin ?pfsb89 ; faldo:end ?pfse90 ; up:ligand ?ligand91 ; rdf:type up:Binding_Site_Annotation . ?pfsb89 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?pfse90 faldo:position ?thisPositionOn93 ; rdf:type faldo:ExactPosition . ?ligand91 rdfs:subClassOf chebi:16991 . ?sam94 up:classifiedWith keyword:175 . ?coiledCoil95 faldo:begin ?coiledCoilb96 ; faldo:end ?coiledCoile97 . ?coiledCoilb96 faldo:position ?coiledCoilbp98 . ?coiledCoile97 faldo:position ?coiledCoilep99 . ?keyword100 up:range ?coiledCoil95 . _:958590 a rdf:Statement ; up:attribution _:958553 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:958591 a rdf:Statement ; up:attribution _:958554 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:958592 a rdf:Statement ; up:attribution _:958555 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:958593 a rdf:Statement ; up:attribution _:958556 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:958594 a rdf:Statement ; up:attribution _:958557 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:958595 a rdf:Statement ; up:attribution _:958558 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:958596 a rdf:Statement ; up:attribution _:958559 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:235 . _:958597 a rdf:Statement ; up:attribution _:958560 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:238 . _:958598 a rdf:Statement ; up:attribution _:958561 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:244 . _:958599 a rdf:Statement ; up:attribution _:958562 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:255 . _:958600 a rdf:Statement ; up:attribution _:958563 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:269 . _:958601 a rdf:Statement ; up:attribution _:958564 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:958602 a rdf:Statement ; up:attribution _:958565 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:958603 a rdf:Statement ; up:attribution _:958566 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:958604 a rdf:Statement ; up:attribution _:958567 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:540 . _:958605 a rdf:Statement ; up:attribution _:958568 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1194 . _:958606 a rdf:Statement ; up:attribution _:958569 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008409 . _:958607 a rdf:Statement ; up:attribution _:958570 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0017108 . _:958608 a rdf:Statement ; up:attribution _:958571 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003677 . _:958609 a rdf:Statement ; up:attribution _:958572 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0046872 . _:958610 a rdf:Statement ; up:attribution _:958573 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0033567 . _:958611 a rdf:Statement ; up:attribution _:958574 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0039693 . _:958612 a rdf:Statement ; up:attribution _:958575 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:630 . _:958613 a rdf:Statement ; up:source unirule:MF_04140 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:958614 a rdf:Statement ; up:attribution _:958576 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:958615 a rdf:Statement ; up:source unirule:MF_04140 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:958616 a rdf:Statement ; up:attribution _:958577 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:958617 a rdf:Statement ; up:source unirule:MF_04140 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:958618 a rdf:Statement ; up:attribution _:958578 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:958619 a rdf:Statement ; up:source unirule:MF_04140 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:958620 a rdf:Statement ; up:attribution _:958579 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:958621 a rdf:Statement ; up:source unirule:MF_04140 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:958622 a rdf:Statement ; up:attribution _:958580 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:958623 a rdf:Statement ; up:source unirule:MF_04140 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:958624 a rdf:Statement ; up:attribution _:958581 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:958625 a rdf:Statement ; up:source unirule:MF_04140 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:958626 a rdf:Statement ; up:attribution _:958582 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:958627 a rdf:Statement ; up:source unirule:MF_04140 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:958628 a rdf:Statement ; up:attribution _:958583 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:958629 a rdf:Statement ; up:source unirule:MF_04140 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:958630 a rdf:Statement ; up:attribution _:958584 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:958631 a rdf:Statement ; up:source unirule:MF_04140 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:958632 a rdf:Statement ; up:attribution _:958585 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:958633 a rdf:Statement ; up:source unirule:MF_04140 ; rdf:subject ?pfs73 ; rdf:predicate up:annotation ; rdf:object ?annotation74 . _:958634 a rdf:Statement ; up:attribution _:958586 ; rdf:subject ?pfs73 ; rdf:predicate up:annotation ; rdf:object ?annotation74 . _:958635 a rdf:Statement ; up:source unirule:MF_04140 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:958636 a rdf:Statement ; up:attribution _:958587 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:958637 a rdf:Statement ; up:source unirule:MF_04140 ; rdf:subject ?pfs87 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:958638 a rdf:Statement ; up:attribution _:958588 ; rdf:subject ?pfs87 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:958639 a rdf:Statement ; up:attribution _:958589 ; rdf:subject ?sam94 ; rdf:predicate up:classifiedWith ; rdf:object keyword:175 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04140 #Rule MF_04140 Created by:chulo on:2019-05-23 Modified by:ecastro on:2022-11-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04140 . ?thisOrganism rdfs:subClassOf+ taxon:10239 . BIND(URI(CONCAT(STR(?this), '#MF_04140a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_04140a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_04140a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_04140a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_04140a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_04140a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP06229106 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06229108 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06229MF_04140101 . ?templateMotifSequenceMatchRegionP06229106 faldo:begin ?templateMotifSequenceMatchBeginP06229107 . ?templateMotifSequenceMatchBeginP06229107 faldo:position ?templateMotifSequenceMatchBeginPositionP06229102 ; faldo:reference isoform:P06229-1 . ?templateMotifSequenceProfileAlignmentOperationP06229108 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . ?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04140112 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06229MF_04140103 . ?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04140111 . ?targetMotifMatchRegionMatchBeginMF_04140111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04140104 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04140112 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_2) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06229MF_04140101, 1, (STRLEN(?templateMotifCigarP06229MF_04140101) - STRLEN(REPLACE(?templateMotifCigarP06229MF_04140101, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionP06229102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06229MF_04140103, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140103) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06229MF_04140103, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140103) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) . BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_04140104) - 1) AS ?thisPositionOn15) . BIND(?thisPositionOn15 AS ?thisPositionOn16) . BIND(?this AS ?pfs1t115) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'D')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06229MF_04140101, 1, (STRLEN(?templateMotifCigarP06229MF_04140101) - STRLEN(REPLACE(?templateMotifCigarP06229MF_04140101, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionP06229102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06229MF_04140103, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140103) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06229MF_04140103, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140103) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) . BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_04140104) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs1t118) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'D')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06229MF_04140101, 1, (STRLEN(?templateMotifCigarP06229MF_04140101) - STRLEN(REPLACE(?templateMotifCigarP06229MF_04140101, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionP06229102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06229MF_04140103, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140103) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06229MF_04140103, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140103) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) . BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_04140104) - 1) AS ?thisPositionOn27) . BIND(?thisPositionOn27 AS ?thisPositionOn28) . BIND(?this AS ?pfs1t121) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'D')) . BIND(?this AS ?pfs10) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionP06229127 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06229129 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06229MF_04140122 . ?templateMotifSequenceMatchRegionP06229127 faldo:begin ?templateMotifSequenceMatchBeginP06229128 . ?templateMotifSequenceMatchBeginP06229128 faldo:position ?templateMotifSequenceMatchBeginPositionP06229123 ; faldo:reference isoform:P06229-1 . ?templateMotifSequenceProfileAlignmentOperationP06229129 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . ?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04140133 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06229MF_04140124 . ?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04140132 . ?targetMotifMatchRegionMatchBeginMF_04140132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04140125 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04140133 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06229MF_04140122, 1, (STRLEN(?templateMotifCigarP06229MF_04140122) - STRLEN(REPLACE(?templateMotifCigarP06229MF_04140122, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionP06229123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06229MF_04140124, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140124) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06229MF_04140124, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140124) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) . BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_04140125) - 1) AS ?thisPositionOn34) . BIND(?thisPositionOn34 AS ?thisPositionOn35) . BIND(?this AS ?pfs2t136) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'V')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06229MF_04140122, 1, (STRLEN(?templateMotifCigarP06229MF_04140122) - STRLEN(REPLACE(?templateMotifCigarP06229MF_04140122, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP06229123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06229MF_04140124, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140124) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06229MF_04140124, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140124) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) . BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_04140125) - 1) AS ?thisPositionOn40) . BIND(?thisPositionOn40 AS ?thisPositionOn41) . BIND(?this AS ?pfs2t139) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'I')) . BIND(?this AS ?pfs29) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionP06229145 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06229147 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06229MF_04140140 . ?templateMotifSequenceMatchRegionP06229145 faldo:begin ?templateMotifSequenceMatchBeginP06229146 . ?templateMotifSequenceMatchBeginP06229146 faldo:position ?templateMotifSequenceMatchBeginPositionP06229141 ; faldo:reference isoform:P06229-1 . ?templateMotifSequenceProfileAlignmentOperationP06229147 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . ?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04140151 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06229MF_04140142 . ?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04140150 . ?targetMotifMatchRegionMatchBeginMF_04140150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04140143 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04140151 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . BIND(1 AS ?thisPositionOn46) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn47) . BIND(?this AS ?pfs3t152) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) . FILTER ((BOUND(?thisPositionOn46) && BOUND(?thisPositionOn47))) . BIND(URI(CONCAT(STR(?this), '#MF_04140a43')) AS ?annotation43) . BIND(?this AS ?pfs42) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionP06229158 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06229160 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06229MF_04140153 . ?templateMotifSequenceMatchRegionP06229158 faldo:begin ?templateMotifSequenceMatchBeginP06229159 . ?templateMotifSequenceMatchBeginP06229159 faldo:position ?templateMotifSequenceMatchBeginPositionP06229154 ; faldo:reference isoform:P06229-1 . ?templateMotifSequenceProfileAlignmentOperationP06229160 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . ?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04140164 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06229MF_04140155 . ?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04140163 . ?targetMotifMatchRegionMatchBeginMF_04140163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04140156 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04140164 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06229MF_04140153, 1, (STRLEN(?templateMotifCigarP06229MF_04140153) - STRLEN(REPLACE(?templateMotifCigarP06229MF_04140153, CONCAT('^(?:-*[^-]){', STR(((190 - ?templateMotifSequenceMatchBeginPositionP06229154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06229MF_04140155, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140155) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06229MF_04140155, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140155) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) . BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_04140156) - 1) AS ?thisPositionOn52) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06229MF_04140153, 1, (STRLEN(?templateMotifCigarP06229MF_04140153) - STRLEN(REPLACE(?templateMotifCigarP06229MF_04140153, CONCAT('^(?:-*[^-]){', STR(((263 - ?templateMotifSequenceMatchBeginPositionP06229154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06229MF_04140155, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140155) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06229MF_04140155, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140155) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) . BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_04140156) - 1) AS ?thisPositionOn53) . BIND(?this AS ?pfs3t169) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse51) . FILTER ((BOUND(?thisPositionOn52) && BOUND(?thisPositionOn53))) . BIND(URI(CONCAT(STR(?this), '#MF_04140a49')) AS ?annotation49) . BIND(?this AS ?pfs48) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionP06229175 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06229177 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06229MF_04140170 . ?templateMotifSequenceMatchRegionP06229175 faldo:begin ?templateMotifSequenceMatchBeginP06229176 . ?templateMotifSequenceMatchBeginP06229176 faldo:position ?templateMotifSequenceMatchBeginPositionP06229171 ; faldo:reference isoform:P06229-1 . ?templateMotifSequenceProfileAlignmentOperationP06229177 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . ?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04140181 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06229MF_04140172 . ?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04140180 . ?targetMotifMatchRegionMatchBeginMF_04140180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04140173 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04140181 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06229MF_04140170, 1, (STRLEN(?templateMotifCigarP06229MF_04140170) - STRLEN(REPLACE(?templateMotifCigarP06229MF_04140170, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP06229171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06229MF_04140172, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140172) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06229MF_04140172, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140172) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) . BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_04140173) - 1) AS ?thisPositionOn58) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06229MF_04140170, 1, (STRLEN(?templateMotifCigarP06229MF_04140170) - STRLEN(REPLACE(?templateMotifCigarP06229MF_04140170, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionP06229171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06229MF_04140172, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140172) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06229MF_04140172, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140172) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) . BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_04140173) - 1) AS ?thisPositionOn59) . BIND(?this AS ?pfs3t186) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse57) . FILTER (REGEX('YK[ARNDCQEGHILKMFPSTWYVBZJUOX]*', SUBSTR(?thisSequenceValue, ?thisPositionOn58, (?thisPositionOn59 - ?thisPositionOn58)))) . BIND(URI(CONCAT(STR(?this), '#MF_04140a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch191 faldo:location ?templateMotifSequenceMatchRegionP06229192 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06229194 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06229MF_04140187 . ?templateMotifSequenceMatchRegionP06229192 faldo:begin ?templateMotifSequenceMatchBeginP06229193 . ?templateMotifSequenceMatchBeginP06229193 faldo:position ?templateMotifSequenceMatchBeginPositionP06229188 ; faldo:reference isoform:P06229-1 . ?templateMotifSequenceProfileAlignmentOperationP06229194 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . ?targetMotifMatch195 faldo:location ?targetMotifMatchRegionMatch196 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04140198 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06229MF_04140189 . ?targetMotifMatchRegionMatch196 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04140197 . ?targetMotifMatchRegionMatchBeginMF_04140197 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04140190 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04140198 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06229MF_04140187, 1, (STRLEN(?templateMotifCigarP06229MF_04140187) - STRLEN(REPLACE(?templateMotifCigarP06229MF_04140187, CONCAT('^(?:-*[^-]){', STR(((188 - ?templateMotifSequenceMatchBeginPositionP06229188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1199) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06229MF_04140189, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140189) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06229MF_04140189, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140189) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), '')))), '[^-]', ''))) AS ?step2200) . BIND(((?step2200 + ?targetMotifMatchRegionMatchBeginPositionMF_04140190) - 1) AS ?thisPositionOn64) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06229MF_04140187, 1, (STRLEN(?templateMotifCigarP06229MF_04140187) - STRLEN(REPLACE(?templateMotifCigarP06229MF_04140187, CONCAT('^(?:-*[^-]){', STR(((224 - ?templateMotifSequenceMatchBeginPositionP06229188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1201) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06229MF_04140189, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140189) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06229MF_04140189, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140189) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), '')))), '[^-]', ''))) AS ?step2202) . BIND(((?step2202 + ?targetMotifMatchRegionMatchBeginPositionMF_04140190) - 1) AS ?thisPositionOn65) . BIND(?this AS ?pfs3t203) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb62) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse63) . FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)[ED][ARNDCQEGHILKMFPSTWYVBZJUOX]*GD[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]D[ARNDCQEGHILKMFPSTWYVBZJUOX]*', SUBSTR(?thisSequenceValue, ?thisPositionOn64, (?thisPositionOn65 - ?thisPositionOn64)))) . BIND(URI(CONCAT(STR(?this), '#MF_04140a61')) AS ?annotation61) . BIND(?this AS ?pfs60) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch208 faldo:location ?templateMotifSequenceMatchRegionP06229209 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06229211 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06229MF_04140204 . ?templateMotifSequenceMatchRegionP06229209 faldo:begin ?templateMotifSequenceMatchBeginP06229210 . ?templateMotifSequenceMatchBeginP06229210 faldo:position ?templateMotifSequenceMatchBeginPositionP06229205 ; faldo:reference isoform:P06229-1 . ?templateMotifSequenceProfileAlignmentOperationP06229211 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . ?targetMotifMatch212 faldo:location ?targetMotifMatchRegionMatch213 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04140215 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06229MF_04140206 . ?targetMotifMatchRegionMatch213 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04140214 . ?targetMotifMatchRegionMatchBeginMF_04140214 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04140207 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04140215 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06229MF_04140204, 1, (STRLEN(?templateMotifCigarP06229MF_04140204) - STRLEN(REPLACE(?templateMotifCigarP06229MF_04140204, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionP06229205) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1216) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06229MF_04140206, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140206) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06229MF_04140206, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140206) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), '')))), '[^-]', ''))) AS ?step2217) . BIND(((?step2217 + ?targetMotifMatchRegionMatchBeginPositionMF_04140207) - 1) AS ?thisPositionOn71) . BIND(?thisPositionOn71 AS ?thisPositionOn72) . BIND(?this AS ?pfs3t218) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_04140a67')) AS ?annotation67) . BIND(?this AS ?pfs66) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch223 faldo:location ?templateMotifSequenceMatchRegionP06229224 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06229226 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06229MF_04140219 . ?templateMotifSequenceMatchRegionP06229224 faldo:begin ?templateMotifSequenceMatchBeginP06229225 . ?templateMotifSequenceMatchBeginP06229225 faldo:position ?templateMotifSequenceMatchBeginPositionP06229220 ; faldo:reference isoform:P06229-1 . ?templateMotifSequenceProfileAlignmentOperationP06229226 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . ?targetMotifMatch227 faldo:location ?targetMotifMatchRegionMatch228 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04140230 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06229MF_04140221 . ?targetMotifMatchRegionMatch228 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04140229 . ?targetMotifMatchRegionMatchBeginMF_04140229 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04140222 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04140230 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06229MF_04140219, 1, (STRLEN(?templateMotifCigarP06229MF_04140219) - STRLEN(REPLACE(?templateMotifCigarP06229MF_04140219, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionP06229220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06229MF_04140221, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140221) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06229MF_04140221, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140221) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) . BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_04140222) - 1) AS ?thisPositionOn78) . BIND(?thisPositionOn78 AS ?thisPositionOn79) . BIND(?this AS ?pfs3t233) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb75) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse76) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_04140a74')) AS ?annotation74) . BIND(?this AS ?pfs73) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch238 faldo:location ?templateMotifSequenceMatchRegionP06229239 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06229241 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06229MF_04140234 . ?templateMotifSequenceMatchRegionP06229239 faldo:begin ?templateMotifSequenceMatchBeginP06229240 . ?templateMotifSequenceMatchBeginP06229240 faldo:position ?templateMotifSequenceMatchBeginPositionP06229235 ; faldo:reference isoform:P06229-1 . ?templateMotifSequenceProfileAlignmentOperationP06229241 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . ?targetMotifMatch242 faldo:location ?targetMotifMatchRegionMatch243 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04140245 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06229MF_04140236 . ?targetMotifMatchRegionMatch243 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04140244 . ?targetMotifMatchRegionMatchBeginMF_04140244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04140237 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04140245 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06229MF_04140234, 1, (STRLEN(?templateMotifCigarP06229MF_04140234) - STRLEN(REPLACE(?templateMotifCigarP06229MF_04140234, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionP06229235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06229MF_04140236, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140236) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06229MF_04140236, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140236) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) . BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_04140237) - 1) AS ?thisPositionOn85) . BIND(?thisPositionOn85 AS ?thisPositionOn86) . BIND(?this AS ?pfs3t248) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb82) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse83) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_04140a81')) AS ?annotation81) . BIND(?this AS ?pfs80) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch253 faldo:location ?templateMotifSequenceMatchRegionP06229254 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06229256 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06229MF_04140249 . ?templateMotifSequenceMatchRegionP06229254 faldo:begin ?templateMotifSequenceMatchBeginP06229255 . ?templateMotifSequenceMatchBeginP06229255 faldo:position ?templateMotifSequenceMatchBeginPositionP06229250 ; faldo:reference isoform:P06229-1 . ?templateMotifSequenceProfileAlignmentOperationP06229256 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . ?targetMotifMatch257 faldo:location ?targetMotifMatchRegionMatch258 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04140260 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06229MF_04140251 . ?targetMotifMatchRegionMatch258 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04140259 . ?targetMotifMatchRegionMatchBeginMF_04140259 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04140252 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04140260 edam:has_input signature:MF_04140 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06229MF_04140249, 1, (STRLEN(?templateMotifCigarP06229MF_04140249) - STRLEN(REPLACE(?templateMotifCigarP06229MF_04140249, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP06229250) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1261) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06229MF_04140251, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140251) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06229MF_04140251, 1, (STRLEN(?targetMotifMatchCigarP06229MF_04140251) - STRLEN(REPLACE(?targetMotifMatchCigarP06229MF_04140251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), '')))), '[^-]', ''))) AS ?step2262) . BIND(((?step2262 + ?targetMotifMatchRegionMatchBeginPositionMF_04140252) - 1) AS ?thisPositionOn92) . BIND(?thisPositionOn92 AS ?thisPositionOn93) . BIND(?this AS ?pfs3t263) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb89) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse90) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_04140a88')) AS ?annotation88) . BIND(?this AS ?pfs87) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag264) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag264, ?UNBOUND_VARIABLE) AS ?case7) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag265) . } BIND(IF((BOUND(?tagFTGRP_2) || BOUND(?tagFTGRP_1)), ?caseWithTag265, ?UNBOUND_VARIABLE) AS ?case8) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag266) . } BIND(IF((BOUND(?tagFTGRP_2) || BOUND(?tagFTGRP_1)), ?caseWithTag266, ?UNBOUND_VARIABLE) AS ?case9) . OPTIONAL { ?this up:annotation ?samcc267 ; up:sequence ?thisSequence . ?samcc267 up:range ?samccr268 ; rdf:type up:Coiled_Coil_Annotation . ?samccr268 faldo:begin ?samccb269 ; faldo:end ?samcce270 . ?samccb269 faldo:position ?samccbp271 ; faldo:reference ?thisSequence . ?samcce270 faldo:position ?samccep272 ; faldo:reference ?thisSequence . BIND(?this AS ?sam94) . } BIND(URI(CONCAT(STR(?this), '#MF_04140a100')) AS ?keyword100) . }