CONSTRUCT { _:973518 up:source unirule:MF_04148 . _:973519 up:source unirule:MF_04148 . _:973520 up:ecName '3.1.21.-' ; up:fullName 'Endonuclease' ; rdf:type up:Structured_Name . _:973521 up:source unirule:MF_04148 . _:973522 up:ecName '3.6.4.-' ; up:fullName 'ATPase' ; rdf:type up:Structured_Name . _:973523 up:source unirule:MF_04148 . _:973524 up:source unirule:MF_04148 . _:973525 up:source unirule:MF_04148 . _:973526 up:source unirule:MF_04148 . _:973527 up:source unirule:MF_04148 . _:973528 up:source unirule:MF_04148 . _:973529 up:source unirule:MF_04148 . _:973530 up:source unirule:MF_04148 . _:973531 up:source unirule:MF_04148 . _:973532 up:source unirule:MF_04148 . _:973533 up:source unirule:MF_04148 . _:973534 up:source unirule:MF_04148 . _:973535 up:source unirule:MF_04148 . _:973536 up:source unirule:MF_04148 . _:973537 up:source unirule:MF_04148 . _:973538 up:source unirule:MF_04148 . _:973539 up:source unirule:MF_04148 . _:973540 up:source unirule:MF_04148 . _:973541 up:source unirule:MF_04148 . _:973542 up:source unirule:MF_04148 . _:973543 up:source unirule:MF_04148 . _:973544 up:source unirule:MF_04148 . _:973545 up:source unirule:MF_04148 . _:973546 up:source unirule:MF_04148 . _:973547 up:source unirule:MF_04148 . _:973548 up:source unirule:MF_04148 . _:973549 up:source unirule:MF_04148 . _:973550 up:source unirule:MF_04148 . ?this up:alternativeName ?name1 ; up:annotation ?annotation4 , ?annotation5 , ?annotation6 ; up:classifiedWith GO:0004518 , GO:0004519 , GO:0019073 , GO:0046872 , GO:0051276 , GO:0098009 , keyword:1188 , keyword:231 , keyword:255 , keyword:378 , keyword:426 , keyword:540 , keyword:547 , keyword:67 ; up:domain ?namedpart2 , ?namedpart3 ; up:recommendedName ?name0 . ?name0 up:fullName 'Terminase, large subunit' ; rdf:type up:Structured_Name . ?name1 up:fullName 'DNA-packaging protein gp2' ; rdf:type up:Structured_Name . ?namedpart2 up:recommendedName _:973520 . ?namedpart3 up:recommendedName _:973522 . ?annotation4 a up:Subunit_Annotation ; rdfs:comment 'Interacts with the terminase small subunit; the active complex is composed of a monomer of the terminase large subunit and a nonamer ring of terminase small subunits. Interacts with the portal protein; this interaction allows the packaging of viral DNA.' . ?annotation5 a up:Domain_Annotation ; rdfs:comment 'The ATPase region is in the N-terminus, whereas the nuclease region is in the C-terminus.' . ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the Lederbergvirus large terminase family.' . ?case7 up:classifiedWith keyword:460 , keyword:479 . ?pfs10 up:annotation ?annotation11 , ?annotation17 . ?annotation11 faldo:begin ?pfsb12 ; faldo:end ?pfse13 ; up:ligand ?ligand14 ; rdf:type up:Binding_Site_Annotation . ?pfsb12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?ligand14 rdfs:subClassOf chebi:18420 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:18420 . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; rdf:type up:Motif_Annotation ; rdfs:comment 'Walker A motif' . ?pfsb25 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfs29 up:annotation ?annotation30 . ?annotation30 faldo:begin ?pfsb31 ; faldo:end ?pfse32 ; rdf:type up:Motif_Annotation ; rdfs:comment 'Walker B motif' . ?pfsb31 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse32 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'For ATPase activity' . ?pfsb37 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfs41 up:annotation ?annotation42 . ?annotation42 faldo:begin ?pfsb43 ; faldo:end ?pfse44 ; rdf:type up:Region_Annotation ; rdfs:comment 'Interaction with the terminase small subunit' . ?pfsb43 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse44 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; rdf:type up:Region_Annotation ; rdfs:comment 'ATPase activity' . ?pfsb49 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfs53 up:annotation ?annotation54 . ?annotation54 faldo:begin ?pfsb55 ; faldo:end ?pfse56 ; rdf:type up:Region_Annotation ; rdfs:comment 'Nuclease activity' . ?pfsb55 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfse56 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . _:973551 a rdf:Statement ; up:attribution _:973518 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:973552 a rdf:Statement ; up:attribution _:973519 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:973553 a rdf:Statement ; up:attribution _:973521 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart2 . _:973554 a rdf:Statement ; up:attribution _:973523 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart3 . _:973555 a rdf:Statement ; up:attribution _:973524 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:973556 a rdf:Statement ; up:attribution _:973525 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:973557 a rdf:Statement ; up:attribution _:973526 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:973558 a rdf:Statement ; up:attribution _:973527 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:973559 a rdf:Statement ; up:attribution _:973528 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:255 . _:973560 a rdf:Statement ; up:attribution _:973529 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:973561 a rdf:Statement ; up:attribution _:973530 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:426 . _:973562 a rdf:Statement ; up:attribution _:973531 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:540 . _:973563 a rdf:Statement ; up:attribution _:973532 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:973564 a rdf:Statement ; up:attribution _:973533 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:231 . _:973565 a rdf:Statement ; up:attribution _:973534 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1188 . _:973566 a rdf:Statement ; up:attribution _:973535 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0098009 . _:973567 a rdf:Statement ; up:attribution _:973536 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004519 . _:973568 a rdf:Statement ; up:attribution _:973537 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0046872 . _:973569 a rdf:Statement ; up:attribution _:973538 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004518 . _:973570 a rdf:Statement ; up:attribution _:973539 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0051276 . _:973571 a rdf:Statement ; up:attribution _:973540 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019073 . _:973572 a rdf:Statement ; up:attribution _:973541 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:973573 a rdf:Statement ; up:attribution _:973542 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:973574 a rdf:Statement ; up:source unirule:MF_04148 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:973575 a rdf:Statement ; up:attribution _:973543 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:973576 a rdf:Statement ; up:source unirule:MF_04148 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:973577 a rdf:Statement ; up:attribution _:973544 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:973578 a rdf:Statement ; up:source unirule:MF_04148 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:973579 a rdf:Statement ; up:attribution _:973545 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:973580 a rdf:Statement ; up:source unirule:MF_04148 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:973581 a rdf:Statement ; up:attribution _:973546 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:973582 a rdf:Statement ; up:source unirule:MF_04148 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:973583 a rdf:Statement ; up:attribution _:973547 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:973584 a rdf:Statement ; up:source unirule:MF_04148 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:973585 a rdf:Statement ; up:attribution _:973548 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:973586 a rdf:Statement ; up:source unirule:MF_04148 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:973587 a rdf:Statement ; up:attribution _:973549 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:973588 a rdf:Statement ; up:source unirule:MF_04148 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:973589 a rdf:Statement ; up:attribution _:973550 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04148 #Rule MF_04148 Created by:? on:2020-02-18 Modified by:Edouard de Castro on:2022-11-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04148 . ?thisOrganism rdfs:subClassOf+ taxon:10239 . BIND(URI(CONCAT(STR(?this), '#MF_04148a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_04148a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_04148a2')) AS ?namedpart2) . BIND(URI(CONCAT(STR(?this), '#MF_04148a3')) AS ?namedpart3) . BIND(URI(CONCAT(STR(?this), '#MF_04148a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_04148a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_04148a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionP2674564 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2674566 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP26745MF_0414859 . ?templateMotifSequenceMatchRegionP2674564 faldo:begin ?templateMotifSequenceMatchBeginP2674565 . ?templateMotifSequenceMatchBeginP2674565 faldo:position ?templateMotifSequenceMatchBeginPositionP2674560 ; faldo:reference isoform:P26745-1 . ?templateMotifSequenceProfileAlignmentOperationP2674566 edam:has_input signature:MF_04148 ; rdf:type edam:operation_0300 . ?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0414870 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP26745MF_0414861 . ?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0414869 . ?targetMotifMatchRegionMatchBeginMF_0414869 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0414862 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0414870 edam:has_input signature:MF_04148 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26745MF_0414859, 1, (STRLEN(?templateMotifCigarP26745MF_0414859) - STRLEN(REPLACE(?templateMotifCigarP26745MF_0414859, CONCAT('^(?:-*[^-]){', STR(((321 - ?templateMotifSequenceMatchBeginPositionP2674560) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26745MF_0414861, 1, (STRLEN(?targetMotifMatchCigarP26745MF_0414861) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_0414861, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26745MF_0414861, 1, (STRLEN(?targetMotifMatchCigarP26745MF_0414861) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_0414861, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) . BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0414862) - 1) AS ?thisPositionOn15) . BIND(?thisPositionOn15 AS ?thisPositionOn16) . BIND(?this AS ?pfs1t73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'D')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26745MF_0414859, 1, (STRLEN(?templateMotifCigarP26745MF_0414859) - STRLEN(REPLACE(?templateMotifCigarP26745MF_0414859, CONCAT('^(?:-*[^-]){', STR(((459 - ?templateMotifSequenceMatchBeginPositionP2674560) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26745MF_0414861, 1, (STRLEN(?targetMotifMatchCigarP26745MF_0414861) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_0414861, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26745MF_0414861, 1, (STRLEN(?targetMotifMatchCigarP26745MF_0414861) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_0414861, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) . BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0414862) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs1t76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'D')) . BIND(?this AS ?pfs10) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionP2674582 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2674584 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP26745MF_0414877 . ?templateMotifSequenceMatchRegionP2674582 faldo:begin ?templateMotifSequenceMatchBeginP2674583 . ?templateMotifSequenceMatchBeginP2674583 faldo:position ?templateMotifSequenceMatchBeginPositionP2674578 ; faldo:reference isoform:P26745-1 . ?templateMotifSequenceProfileAlignmentOperationP2674584 edam:has_input signature:MF_04148 ; rdf:type edam:operation_0300 . ?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0414888 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP26745MF_0414879 . ?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0414887 . ?targetMotifMatchRegionMatchBeginMF_0414887 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0414880 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0414888 edam:has_input signature:MF_04148 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26745MF_0414877, 1, (STRLEN(?templateMotifCigarP26745MF_0414877) - STRLEN(REPLACE(?templateMotifCigarP26745MF_0414877, CONCAT('^(?:-*[^-]){', STR(((60 - ?templateMotifSequenceMatchBeginPositionP2674578) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26745MF_0414879, 1, (STRLEN(?targetMotifMatchCigarP26745MF_0414879) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_0414879, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26745MF_0414879, 1, (STRLEN(?targetMotifMatchCigarP26745MF_0414879) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_0414879, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) . BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0414880) - 1) AS ?thisPositionOn27) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26745MF_0414877, 1, (STRLEN(?templateMotifCigarP26745MF_0414877) - STRLEN(REPLACE(?templateMotifCigarP26745MF_0414877, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionP2674578) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26745MF_0414879, 1, (STRLEN(?targetMotifMatchCigarP26745MF_0414879) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_0414879, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26745MF_0414879, 1, (STRLEN(?targetMotifMatchCigarP26745MF_0414879) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_0414879, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) . BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0414880) - 1) AS ?thisPositionOn28) . BIND(?this AS ?pfs2t93) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) . FILTER (REGEX('[ACT][AG]N[QR][CILV]GK[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) . BIND(URI(CONCAT(STR(?this), '#MF_04148a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP2674599 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26745101 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP26745MF_0414894 . ?templateMotifSequenceMatchRegionP2674599 faldo:begin ?templateMotifSequenceMatchBeginP26745100 . ?templateMotifSequenceMatchBeginP26745100 faldo:position ?templateMotifSequenceMatchBeginPositionP2674595 ; faldo:reference isoform:P26745-1 . ?templateMotifSequenceProfileAlignmentOperationP26745101 edam:has_input signature:MF_04148 ; rdf:type edam:operation_0300 . ?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04148105 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP26745MF_0414896 . ?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04148104 . ?targetMotifMatchRegionMatchBeginMF_04148104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0414897 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04148105 edam:has_input signature:MF_04148 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26745MF_0414894, 1, (STRLEN(?templateMotifCigarP26745MF_0414894) - STRLEN(REPLACE(?templateMotifCigarP26745MF_0414894, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionP2674595) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26745MF_0414896, 1, (STRLEN(?targetMotifMatchCigarP26745MF_0414896) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_0414896, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26745MF_0414896, 1, (STRLEN(?targetMotifMatchCigarP26745MF_0414896) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_0414896, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) . BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0414897) - 1) AS ?thisPositionOn33) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26745MF_0414894, 1, (STRLEN(?templateMotifCigarP26745MF_0414894) - STRLEN(REPLACE(?templateMotifCigarP26745MF_0414894, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionP2674595) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26745MF_0414896, 1, (STRLEN(?targetMotifMatchCigarP26745MF_0414896) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_0414896, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26745MF_0414896, 1, (STRLEN(?targetMotifMatchCigarP26745MF_0414896) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_0414896, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) . BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0414897) - 1) AS ?thisPositionOn34) . BIND(?this AS ?pfs2t110) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) . FILTER (REGEX('[FGILVWY][FIV][WH][FILM]DE', SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)))) . BIND(URI(CONCAT(STR(?this), '#MF_04148a30')) AS ?annotation30) . BIND(?this AS ?pfs29) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionP26745116 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26745118 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP26745MF_04148111 . ?templateMotifSequenceMatchRegionP26745116 faldo:begin ?templateMotifSequenceMatchBeginP26745117 . ?templateMotifSequenceMatchBeginP26745117 faldo:position ?templateMotifSequenceMatchBeginPositionP26745112 ; faldo:reference isoform:P26745-1 . ?templateMotifSequenceProfileAlignmentOperationP26745118 edam:has_input signature:MF_04148 ; rdf:type edam:operation_0300 . ?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04148122 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP26745MF_04148113 . ?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04148121 . ?targetMotifMatchRegionMatchBeginMF_04148121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04148114 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04148122 edam:has_input signature:MF_04148 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26745MF_04148111, 1, (STRLEN(?templateMotifCigarP26745MF_04148111) - STRLEN(REPLACE(?templateMotifCigarP26745MF_04148111, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionP26745112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26745MF_04148113, 1, (STRLEN(?targetMotifMatchCigarP26745MF_04148113) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_04148113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26745MF_04148113, 1, (STRLEN(?targetMotifMatchCigarP26745MF_04148113) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_04148113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) . BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_04148114) - 1) AS ?thisPositionOn39) . BIND(?thisPositionOn39 AS ?thisPositionOn40) . BIND(?this AS ?pfs2t125) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_04148a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionP26745131 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26745133 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP26745MF_04148126 . ?templateMotifSequenceMatchRegionP26745131 faldo:begin ?templateMotifSequenceMatchBeginP26745132 . ?templateMotifSequenceMatchBeginP26745132 faldo:position ?templateMotifSequenceMatchBeginPositionP26745127 ; faldo:reference isoform:P26745-1 . ?templateMotifSequenceProfileAlignmentOperationP26745133 edam:has_input signature:MF_04148 ; rdf:type edam:operation_0300 . ?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04148137 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP26745MF_04148128 . ?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04148136 . ?targetMotifMatchRegionMatchBeginMF_04148136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04148129 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04148137 edam:has_input signature:MF_04148 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:186794 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26745MF_04148126, 1, (STRLEN(?templateMotifCigarP26745MF_04148126) - STRLEN(REPLACE(?templateMotifCigarP26745MF_04148126, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP26745127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26745MF_04148128, 1, (STRLEN(?targetMotifMatchCigarP26745MF_04148128) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_04148128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26745MF_04148128, 1, (STRLEN(?targetMotifMatchCigarP26745MF_04148128) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_04148128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) . BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_04148129) - 1) AS ?thisPositionOn45) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26745MF_04148126, 1, (STRLEN(?templateMotifCigarP26745MF_04148126) - STRLEN(REPLACE(?templateMotifCigarP26745MF_04148126, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionP26745127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26745MF_04148128, 1, (STRLEN(?targetMotifMatchCigarP26745MF_04148128) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_04148128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26745MF_04148128, 1, (STRLEN(?targetMotifMatchCigarP26745MF_04148128) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_04148128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) . BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_04148129) - 1) AS ?thisPositionOn46) . BIND(?this AS ?pfs3t142) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) . FILTER ((BOUND(?thisPositionOn45) && BOUND(?thisPositionOn46))) . BIND(URI(CONCAT(STR(?this), '#MF_04148a42')) AS ?annotation42) . BIND(?this AS ?pfs41) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionP26745148 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26745150 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP26745MF_04148143 . ?templateMotifSequenceMatchRegionP26745148 faldo:begin ?templateMotifSequenceMatchBeginP26745149 . ?templateMotifSequenceMatchBeginP26745149 faldo:position ?templateMotifSequenceMatchBeginPositionP26745144 ; faldo:reference isoform:P26745-1 . ?templateMotifSequenceProfileAlignmentOperationP26745150 edam:has_input signature:MF_04148 ; rdf:type edam:operation_0300 . ?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04148154 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP26745MF_04148145 . ?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04148153 . ?targetMotifMatchRegionMatchBeginMF_04148153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04148146 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04148154 edam:has_input signature:MF_04148 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:186794 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26745MF_04148143, 1, (STRLEN(?templateMotifCigarP26745MF_04148143) - STRLEN(REPLACE(?templateMotifCigarP26745MF_04148143, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP26745144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26745MF_04148145, 1, (STRLEN(?targetMotifMatchCigarP26745MF_04148145) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_04148145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26745MF_04148145, 1, (STRLEN(?targetMotifMatchCigarP26745MF_04148145) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_04148145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) . BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_04148146) - 1) AS ?thisPositionOn51) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26745MF_04148143, 1, (STRLEN(?templateMotifCigarP26745MF_04148143) - STRLEN(REPLACE(?templateMotifCigarP26745MF_04148143, CONCAT('^(?:-*[^-]){', STR(((286 - ?templateMotifSequenceMatchBeginPositionP26745144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26745MF_04148145, 1, (STRLEN(?targetMotifMatchCigarP26745MF_04148145) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_04148145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26745MF_04148145, 1, (STRLEN(?targetMotifMatchCigarP26745MF_04148145) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_04148145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) . BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_04148146) - 1) AS ?thisPositionOn52) . BIND(?this AS ?pfs3t159) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse50) . FILTER ((BOUND(?thisPositionOn51) && BOUND(?thisPositionOn52))) . BIND(URI(CONCAT(STR(?this), '#MF_04148a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionP26745165 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26745167 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP26745MF_04148160 . ?templateMotifSequenceMatchRegionP26745165 faldo:begin ?templateMotifSequenceMatchBeginP26745166 . ?templateMotifSequenceMatchBeginP26745166 faldo:position ?templateMotifSequenceMatchBeginPositionP26745161 ; faldo:reference isoform:P26745-1 . ?templateMotifSequenceProfileAlignmentOperationP26745167 edam:has_input signature:MF_04148 ; rdf:type edam:operation_0300 . ?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04148171 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP26745MF_04148162 . ?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04148170 . ?targetMotifMatchRegionMatchBeginMF_04148170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04148163 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04148171 edam:has_input signature:MF_04148 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:186794 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26745MF_04148160, 1, (STRLEN(?templateMotifCigarP26745MF_04148160) - STRLEN(REPLACE(?templateMotifCigarP26745MF_04148160, CONCAT('^(?:-*[^-]){', STR(((312 - ?templateMotifSequenceMatchBeginPositionP26745161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26745MF_04148162, 1, (STRLEN(?targetMotifMatchCigarP26745MF_04148162) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_04148162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26745MF_04148162, 1, (STRLEN(?targetMotifMatchCigarP26745MF_04148162) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_04148162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) . BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_04148163) - 1) AS ?thisPositionOn57) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26745MF_04148160, 1, (STRLEN(?templateMotifCigarP26745MF_04148160) - STRLEN(REPLACE(?templateMotifCigarP26745MF_04148160, CONCAT('^(?:-*[^-]){', STR(((482 - ?templateMotifSequenceMatchBeginPositionP26745161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26745MF_04148162, 1, (STRLEN(?targetMotifMatchCigarP26745MF_04148162) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_04148162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26745MF_04148162, 1, (STRLEN(?targetMotifMatchCigarP26745MF_04148162) - STRLEN(REPLACE(?targetMotifMatchCigarP26745MF_04148162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) . BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_04148163) - 1) AS ?thisPositionOn58) . BIND(?this AS ?pfs3t176) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse56) . FILTER ((BOUND(?thisPositionOn57) && BOUND(?thisPositionOn58))) . BIND(URI(CONCAT(STR(?this), '#MF_04148a54')) AS ?annotation54) . BIND(?this AS ?pfs53) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag177) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag177, ?UNBOUND_VARIABLE) AS ?case7) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:186794 . BIND(?this AS ?case8) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:186794 . })) . BIND(?this AS ?case9) . } }