CONSTRUCT { _:967279 up:source unirule:MF_04154 . _:967280 up:source unirule:MF_04154 . _:967281 up:source unirule:MF_04154 . _:967282 up:source unirule:MF_04154 . _:967283 up:source unirule:MF_04154 . _:967284 up:source unirule:MF_04154 . _:967285 up:source unirule:MF_04154 . _:967286 up:source unirule:MF_04154 . _:967287 up:source unirule:MF_04154 . _:967288 up:source unirule:MF_04154 . _:967289 up:source unirule:MF_04154 . _:967290 up:source unirule:MF_04154 . _:967291 up:source unirule:MF_04154 . _:967292 up:source unirule:MF_04154 . _:967293 up:source unirule:MF_04154 . _:967294 up:source unirule:MF_04154 . _:967295 up:source unirule:MF_04154 . _:967296 up:source unirule:MF_04154 . _:967297 up:source unirule:MF_04154 . _:967298 up:source unirule:MF_04154 . _:967299 up:source unirule:MF_04154 . _:967300 up:source unirule:MF_04154 . _:967301 up:source unirule:MF_04154 . _:967302 up:source unirule:MF_04154 . _:967303 up:source unirule:MF_04154 . _:967304 up:source unirule:MF_04154 . _:967305 up:source unirule:MF_04154 . _:967306 up:source unirule:MF_04154 . _:967307 up:source unirule:MF_04154 . _:967308 up:source unirule:MF_04154 . _:967309 up:source unirule:MF_04154 . _:967310 up:source unirule:MF_04154 . _:967311 up:source unirule:MF_04154 . _:967312 up:source unirule:MF_04154 . _:967313 up:source unirule:MF_04154 . _:967314 up:source unirule:MF_04154 . _:967315 up:source unirule:MF_04154 . ?this up:annotation ?annotation1 , ?annotation3 , ?annotation4 ; up:classifiedWith GO:0003678 , GO:0003896 , GO:0005524 , GO:0016740 , GO:0039693 , keyword:1194 , keyword:347 , keyword:378 , keyword:479 , keyword:511 , keyword:548 , keyword:639 , keyword:67 , keyword:808 , keyword:862 , keyword:863 ; up:recommendedName ?name0 . ?name0 up:ecName '2.7.7.-' , '3.6.4.12' ; up:fullName 'DNA helicase/primase' ; rdf:type up:Structured_Name . ?annotation1 up:activity ?activity2 ; rdf:type up:Catalytic_Activity_Annotation . ?activity2 up:catalyticActivity <http://rdf.rhea-db.org/13065>; up:enzymeClass <http://purl.uniprot.org/enzyme/3.6.4.12>. ?annotation3 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 2 Mg(2+), one of which is catalytic.' . ?annotation4 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the Teseptimavirus DNA helicase/primase family.' . ?case5 up:classifiedWith keyword:460 . ?case6 up:classifiedWith GO:0008270 . ?pfs11 up:annotation ?annotation12 , ?annotation18 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; up:ligand ?ligand15 ; rdf:type up:Binding_Site_Annotation . ?pfsb13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?ligand15 rdfs:subClassOf chebi:18420 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; up:ligand ?ligand21 ; rdf:type up:Binding_Site_Annotation . ?pfsb19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?ligand21 rdfs:subClassOf chebi:18420 . ?pfs24 up:annotation ?annotation25 , ?annotation31 , ?annotation37 , ?annotation43 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; up:ligand ?ligand28 ; rdf:type up:Binding_Site_Annotation . ?pfsb26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?ligand28 rdfs:subClassOf chebi:29105 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:29105 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; up:ligand ?ligand40 ; rdf:type up:Binding_Site_Annotation . ?pfsb38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?ligand40 rdfs:subClassOf chebi:29105 . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; up:ligand ?ligand46 ; rdf:type up:Binding_Site_Annotation . ?pfsb44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?ligand46 rdfs:subClassOf chebi:29105 . ?pfs49 up:annotation ?annotation50 . ?annotation50 faldo:begin ?pfsb51 ; faldo:end ?pfse52 ; rdf:type up:Region_Annotation ; rdfs:comment 'Binding to viral DNA polymerase' . ?pfsb51 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfse52 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfs55 up:annotation ?annotation56 . ?annotation56 faldo:begin ?pfsb57 ; faldo:end ?pfse58 ; rdf:type up:Zinc_Finger_Annotation ; rdfs:comment 'C4-like; zinc ribbon fold' . ?pfsb57 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfse58 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfs61 up:annotation ?annotation62 . ?annotation62 faldo:begin ?pfsb63 ; faldo:end ?pfse64 ; up:ligand ?ligand65 ; rdf:type up:Binding_Site_Annotation . ?pfsb63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?ligand65 rdfs:subClassOf chebi:30616 . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; up:ligand ?ligand72 ; rdf:type up:Binding_Site_Annotation . ?pfsb70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?ligand72 rdfs:subClassOf chebi:18420 . ?pfs75 up:annotation ?annotation76 . ?annotation76 faldo:begin ?pfsb77 ; faldo:end ?pfse78 ; rdf:type up:Site_Annotation ; rdfs:comment 'dTTP/dATP binding' . ?pfsb77 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?pfse78 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?pfs81 up:annotation ?annotation82 . ?annotation82 faldo:begin ?pfsb83 ; faldo:end ?pfse84 ; rdf:type up:Site_Annotation ; rdfs:comment 'dTTP/dATP binding' . ?pfsb83 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?pfse84 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . ?pfs87 up:annotation ?annotation88 . ?annotation88 faldo:begin ?pfsb89 ; faldo:end ?pfse90 ; rdf:type up:Site_Annotation ; rdfs:comment 'dTTP/dATP binding' . ?pfsb89 faldo:position ?thisPositionOn91 ; rdf:type faldo:ExactPosition . ?pfse90 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?pfs93 up:annotation ?annotation94 . ?annotation94 faldo:begin ?pfsb95 ; faldo:end ?pfse96 ; rdf:type up:Site_Annotation ; rdfs:comment 'dTTP/dATP binding' . ?pfsb95 faldo:position ?thisPositionOn97 ; rdf:type faldo:ExactPosition . ?pfse96 faldo:position ?thisPositionOn98 ; rdf:type faldo:ExactPosition . ?pfs99 up:annotation ?annotation100 . ?annotation100 faldo:begin ?pfsb101 ; faldo:end ?pfse102 ; rdf:type up:Site_Annotation ; rdfs:comment 'dTTP/dATP binding' . ?pfsb101 faldo:position ?thisPositionOn103 ; rdf:type faldo:ExactPosition . ?pfse102 faldo:position ?thisPositionOn104 ; rdf:type faldo:ExactPosition . _:967316 a rdf:Statement ; up:attribution _:967279 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:967317 a rdf:Statement ; up:attribution _:967280 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:967318 a rdf:Statement ; up:attribution _:967281 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:967319 a rdf:Statement ; up:attribution _:967282 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:967320 a rdf:Statement ; up:attribution _:967283 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:967321 a rdf:Statement ; up:attribution _:967284 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1194 . _:967322 a rdf:Statement ; up:attribution _:967285 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:347 . _:967323 a rdf:Statement ; up:attribution _:967286 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:967324 a rdf:Statement ; up:attribution _:967287 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:548 . _:967325 a rdf:Statement ; up:attribution _:967288 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:639 . _:967326 a rdf:Statement ; up:attribution _:967289 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:967327 a rdf:Statement ; up:attribution _:967290 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:511 . _:967328 a rdf:Statement ; up:attribution _:967291 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:967329 a rdf:Statement ; up:attribution _:967292 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:863 . _:967330 a rdf:Statement ; up:attribution _:967293 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:967331 a rdf:Statement ; up:attribution _:967294 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003896 . _:967332 a rdf:Statement ; up:attribution _:967295 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:967333 a rdf:Statement ; up:attribution _:967296 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003678 . _:967334 a rdf:Statement ; up:attribution _:967297 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0039693 . _:967335 a rdf:Statement ; up:attribution _:967298 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016740 . _:967336 a rdf:Statement ; up:attribution _:967299 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:967337 a rdf:Statement ; up:attribution _:967300 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:967338 a rdf:Statement ; up:source unirule:MF_04154 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:967339 a rdf:Statement ; up:attribution _:967301 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:967340 a rdf:Statement ; up:source unirule:MF_04154 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:967341 a rdf:Statement ; up:attribution _:967302 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:967342 a rdf:Statement ; up:source unirule:MF_04154 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:967343 a rdf:Statement ; up:attribution _:967303 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:967344 a rdf:Statement ; up:source unirule:MF_04154 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:967345 a rdf:Statement ; up:attribution _:967304 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:967346 a rdf:Statement ; up:source unirule:MF_04154 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:967347 a rdf:Statement ; up:attribution _:967305 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:967348 a rdf:Statement ; up:source unirule:MF_04154 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:967349 a rdf:Statement ; up:attribution _:967306 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:967350 a rdf:Statement ; up:source unirule:MF_04154 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:967351 a rdf:Statement ; up:attribution _:967307 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:967352 a rdf:Statement ; up:source unirule:MF_04154 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:967353 a rdf:Statement ; up:attribution _:967308 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:967354 a rdf:Statement ; up:source unirule:MF_04154 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:967355 a rdf:Statement ; up:attribution _:967309 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:967356 a rdf:Statement ; up:source unirule:MF_04154 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:967357 a rdf:Statement ; up:attribution _:967310 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:967358 a rdf:Statement ; up:source unirule:MF_04154 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:967359 a rdf:Statement ; up:attribution _:967311 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:967360 a rdf:Statement ; up:source unirule:MF_04154 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation82 . _:967361 a rdf:Statement ; up:attribution _:967312 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation82 . _:967362 a rdf:Statement ; up:source unirule:MF_04154 ; rdf:subject ?pfs87 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:967363 a rdf:Statement ; up:attribution _:967313 ; rdf:subject ?pfs87 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:967364 a rdf:Statement ; up:source unirule:MF_04154 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:967365 a rdf:Statement ; up:attribution _:967314 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:967366 a rdf:Statement ; up:source unirule:MF_04154 ; rdf:subject ?pfs99 ; rdf:predicate up:annotation ; rdf:object ?annotation100 . _:967367 a rdf:Statement ; up:attribution _:967315 ; rdf:subject ?pfs99 ; rdf:predicate up:annotation ; rdf:object ?annotation100 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04154 #Rule MF_04154 Created by:chulo on:2021-02-08 Modified by:ecastro on:2022-11-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04154 . ?thisOrganism rdfs:subClassOf+ taxon:10239 . BIND(URI(CONCAT(STR(?this), '#MF_04154a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_04154a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_04154a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_04154a4')) AS ?annotation4) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP03692110 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03692112 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03692MF_04154105 . ?templateMotifSequenceMatchRegionP03692110 faldo:begin ?templateMotifSequenceMatchBeginP03692111 . ?templateMotifSequenceMatchBeginP03692111 faldo:position ?templateMotifSequenceMatchBeginPositionP03692106 ; faldo:reference isoform:P03692-1 . ?templateMotifSequenceProfileAlignmentOperationP03692112 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . ?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04154116 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03692MF_04154107 . ?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04154115 . ?targetMotifMatchRegionMatchBeginMF_04154115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04154108 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04154116 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_2) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154105, 1, (STRLEN(?templateMotifCigarP03692MF_04154105) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154105, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionP03692106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154107, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154107) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154107, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154107) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) . BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_04154108) - 1) AS ?thisPositionOn16) . BIND(?thisPositionOn16 AS ?thisPositionOn17) . BIND(?this AS ?pfs1t119) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'E')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154105, 1, (STRLEN(?templateMotifCigarP03692MF_04154105) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154105, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionP03692106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154107, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154107) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154107, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154107) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) . BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_04154108) - 1) AS ?thisPositionOn22) . BIND(?thisPositionOn22 AS ?thisPositionOn23) . BIND(?this AS ?pfs1t122) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'D')) . BIND(?this AS ?pfs11) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionP03692128 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03692130 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03692MF_04154123 . ?templateMotifSequenceMatchRegionP03692128 faldo:begin ?templateMotifSequenceMatchBeginP03692129 . ?templateMotifSequenceMatchBeginP03692129 faldo:position ?templateMotifSequenceMatchBeginPositionP03692124 ; faldo:reference isoform:P03692-1 . ?templateMotifSequenceProfileAlignmentOperationP03692130 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . ?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04154134 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03692MF_04154125 . ?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04154133 . ?targetMotifMatchRegionMatchBeginMF_04154133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04154126 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04154134 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154123, 1, (STRLEN(?templateMotifCigarP03692MF_04154123) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154123, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP03692124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154125, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154125) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154125, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154125) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) . BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_04154126) - 1) AS ?thisPositionOn29) . BIND(?thisPositionOn29 AS ?thisPositionOn30) . BIND(?this AS ?pfs2t137) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154123, 1, (STRLEN(?templateMotifCigarP03692MF_04154123) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154123, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionP03692124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154125, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154125) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154125, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154125) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) . BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_04154126) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs2t140) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154123, 1, (STRLEN(?templateMotifCigarP03692MF_04154123) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154123, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP03692124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154125, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154125) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154125, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154125) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) . BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_04154126) - 1) AS ?thisPositionOn41) . BIND(?thisPositionOn41 AS ?thisPositionOn42) . BIND(?this AS ?pfs2t143) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154123, 1, (STRLEN(?templateMotifCigarP03692MF_04154123) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154123, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP03692124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154125, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154125) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154125, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154125) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) . BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_04154126) - 1) AS ?thisPositionOn47) . BIND(?thisPositionOn47 AS ?thisPositionOn48) . BIND(?this AS ?pfs2t146) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'C')) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionP03692152 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03692154 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03692MF_04154147 . ?templateMotifSequenceMatchRegionP03692152 faldo:begin ?templateMotifSequenceMatchBeginP03692153 . ?templateMotifSequenceMatchBeginP03692153 faldo:position ?templateMotifSequenceMatchBeginPositionP03692148 ; faldo:reference isoform:P03692-1 . ?templateMotifSequenceProfileAlignmentOperationP03692154 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . ?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04154158 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03692MF_04154149 . ?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04154157 . ?targetMotifMatchRegionMatchBeginMF_04154157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04154150 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04154158 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154147, 1, (STRLEN(?templateMotifCigarP03692MF_04154147) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154147, CONCAT('^(?:-*[^-]){', STR(((550 - ?templateMotifSequenceMatchBeginPositionP03692148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154149, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154149) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154149, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154149) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) . BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_04154150) - 1) AS ?thisPositionOn53) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154147, 1, (STRLEN(?templateMotifCigarP03692MF_04154147) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154147, CONCAT('^(?:-*[^-]){', STR(((566 - ?templateMotifSequenceMatchBeginPositionP03692148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154149, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154149) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154149, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154149) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) . BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_04154150) - 1) AS ?thisPositionOn54) . BIND(?this AS ?pfs3t163) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse52) . FILTER ((BOUND(?thisPositionOn53) && BOUND(?thisPositionOn54))) . BIND(URI(CONCAT(STR(?this), '#MF_04154a50')) AS ?annotation50) . BIND(?this AS ?pfs49) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionP03692169 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03692171 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03692MF_04154164 . ?templateMotifSequenceMatchRegionP03692169 faldo:begin ?templateMotifSequenceMatchBeginP03692170 . ?templateMotifSequenceMatchBeginP03692170 faldo:position ?templateMotifSequenceMatchBeginPositionP03692165 ; faldo:reference isoform:P03692-1 . ?templateMotifSequenceProfileAlignmentOperationP03692171 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . ?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04154175 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03692MF_04154166 . ?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04154174 . ?targetMotifMatchRegionMatchBeginMF_04154174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04154167 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04154175 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154164, 1, (STRLEN(?templateMotifCigarP03692MF_04154164) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154164, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP03692165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154166, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154166) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154166, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154166) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) . BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_04154167) - 1) AS ?thisPositionOn59) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154164, 1, (STRLEN(?templateMotifCigarP03692MF_04154164) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154164, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP03692165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154166, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154166) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154166, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154166) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) . BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_04154167) - 1) AS ?thisPositionOn60) . BIND(?this AS ?pfs3t180) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb57) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse58) . FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]{2,4)C[ARNDCQEGHILKMFPSTWYVBZJUOX]{15,21)C[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)C', SUBSTR(?thisSequenceValue, ?thisPositionOn59, (?thisPositionOn60 - ?thisPositionOn59)))) . BIND(URI(CONCAT(STR(?this), '#MF_04154a56')) AS ?annotation56) . BIND(?this AS ?pfs55) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch185 faldo:location ?templateMotifSequenceMatchRegionP03692186 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03692188 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03692MF_04154181 . ?templateMotifSequenceMatchRegionP03692186 faldo:begin ?templateMotifSequenceMatchBeginP03692187 . ?templateMotifSequenceMatchBeginP03692187 faldo:position ?templateMotifSequenceMatchBeginPositionP03692182 ; faldo:reference isoform:P03692-1 . ?templateMotifSequenceProfileAlignmentOperationP03692188 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . ?targetMotifMatch189 faldo:location ?targetMotifMatchRegionMatch190 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04154192 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03692MF_04154183 . ?targetMotifMatchRegionMatch190 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04154191 . ?targetMotifMatchRegionMatchBeginMF_04154191 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04154184 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04154192 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154181, 1, (STRLEN(?templateMotifCigarP03692MF_04154181) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154181, CONCAT('^(?:-*[^-]){', STR(((312 - ?templateMotifSequenceMatchBeginPositionP03692182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154183, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154183) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154183, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154183) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) . BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_04154184) - 1) AS ?thisPositionOn66) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154181, 1, (STRLEN(?templateMotifCigarP03692MF_04154181) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154181, CONCAT('^(?:-*[^-]){', STR(((319 - ?templateMotifSequenceMatchBeginPositionP03692182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154183, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154183) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154183, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154183) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) . BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_04154184) - 1) AS ?thisPositionOn67) . BIND(?this AS ?pfs3t197) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) . FILTER (REGEX('[AS]G[ST]G[ARNDCQEGHILKMFPSTWYVBZJUOX]GK[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn66, (?thisPositionOn67 - ?thisPositionOn66)))) . BIND(URI(CONCAT(STR(?this), '#MF_04154a62')) AS ?annotation62) . BIND(?this AS ?pfs61) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionP03692203 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03692205 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03692MF_04154198 . ?templateMotifSequenceMatchRegionP03692203 faldo:begin ?templateMotifSequenceMatchBeginP03692204 . ?templateMotifSequenceMatchBeginP03692204 faldo:position ?templateMotifSequenceMatchBeginPositionP03692199 ; faldo:reference isoform:P03692-1 . ?templateMotifSequenceProfileAlignmentOperationP03692205 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . ?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04154209 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03692MF_04154200 . ?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04154208 . ?targetMotifMatchRegionMatchBeginMF_04154208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04154201 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04154209 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154198, 1, (STRLEN(?templateMotifCigarP03692MF_04154198) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154198, CONCAT('^(?:-*[^-]){', STR(((237 - ?templateMotifSequenceMatchBeginPositionP03692199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154200, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154200) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154200, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154200) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) . BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_04154201) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs3t212) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_04154a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionP03692218 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03692220 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03692MF_04154213 . ?templateMotifSequenceMatchRegionP03692218 faldo:begin ?templateMotifSequenceMatchBeginP03692219 . ?templateMotifSequenceMatchBeginP03692219 faldo:position ?templateMotifSequenceMatchBeginPositionP03692214 ; faldo:reference isoform:P03692-1 . ?templateMotifSequenceProfileAlignmentOperationP03692220 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . ?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04154224 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03692MF_04154215 . ?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04154223 . ?targetMotifMatchRegionMatchBeginMF_04154223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04154216 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04154224 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154213, 1, (STRLEN(?templateMotifCigarP03692MF_04154213) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154213, CONCAT('^(?:-*[^-]){', STR(((361 - ?templateMotifSequenceMatchBeginPositionP03692214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154215, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154215) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154215, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154215) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) . BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_04154216) - 1) AS ?thisPositionOn79) . BIND(?thisPositionOn79 AS ?thisPositionOn80) . BIND(?this AS ?pfs3t227) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb77) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse78) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_04154a76')) AS ?annotation76) . BIND(?this AS ?pfs75) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionP03692233 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03692235 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03692MF_04154228 . ?templateMotifSequenceMatchRegionP03692233 faldo:begin ?templateMotifSequenceMatchBeginP03692234 . ?templateMotifSequenceMatchBeginP03692234 faldo:position ?templateMotifSequenceMatchBeginPositionP03692229 ; faldo:reference isoform:P03692-1 . ?templateMotifSequenceProfileAlignmentOperationP03692235 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . ?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04154239 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03692MF_04154230 . ?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04154238 . ?targetMotifMatchRegionMatchBeginMF_04154238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04154231 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04154239 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154228, 1, (STRLEN(?templateMotifCigarP03692MF_04154228) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154228, CONCAT('^(?:-*[^-]){', STR(((465 - ?templateMotifSequenceMatchBeginPositionP03692229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154230, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154230) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154230, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154230) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) . BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_04154231) - 1) AS ?thisPositionOn85) . BIND(?thisPositionOn85 AS ?thisPositionOn86) . BIND(?this AS ?pfs3t242) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb83) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse84) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_04154a82')) AS ?annotation82) . BIND(?this AS ?pfs81) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch247 faldo:location ?templateMotifSequenceMatchRegionP03692248 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03692250 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03692MF_04154243 . ?templateMotifSequenceMatchRegionP03692248 faldo:begin ?templateMotifSequenceMatchBeginP03692249 . ?templateMotifSequenceMatchBeginP03692249 faldo:position ?templateMotifSequenceMatchBeginPositionP03692244 ; faldo:reference isoform:P03692-1 . ?templateMotifSequenceProfileAlignmentOperationP03692250 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . ?targetMotifMatch251 faldo:location ?targetMotifMatchRegionMatch252 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04154254 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03692MF_04154245 . ?targetMotifMatchRegionMatch252 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04154253 . ?targetMotifMatchRegionMatchBeginMF_04154253 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04154246 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04154254 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154243, 1, (STRLEN(?templateMotifCigarP03692MF_04154243) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154243, CONCAT('^(?:-*[^-]){', STR(((504 - ?templateMotifSequenceMatchBeginPositionP03692244) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1255) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154245, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154245) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154245, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154245) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), '')))), '[^-]', ''))) AS ?step2256) . BIND(((?step2256 + ?targetMotifMatchRegionMatchBeginPositionMF_04154246) - 1) AS ?thisPositionOn91) . BIND(?thisPositionOn91 AS ?thisPositionOn92) . BIND(?this AS ?pfs3t257) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb89) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse90) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_04154a88')) AS ?annotation88) . BIND(?this AS ?pfs87) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch262 faldo:location ?templateMotifSequenceMatchRegionP03692263 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03692265 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03692MF_04154258 . ?templateMotifSequenceMatchRegionP03692263 faldo:begin ?templateMotifSequenceMatchBeginP03692264 . ?templateMotifSequenceMatchBeginP03692264 faldo:position ?templateMotifSequenceMatchBeginPositionP03692259 ; faldo:reference isoform:P03692-1 . ?templateMotifSequenceProfileAlignmentOperationP03692265 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . ?targetMotifMatch266 faldo:location ?targetMotifMatchRegionMatch267 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04154269 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03692MF_04154260 . ?targetMotifMatchRegionMatch267 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04154268 . ?targetMotifMatchRegionMatchBeginMF_04154268 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04154261 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04154269 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154258, 1, (STRLEN(?templateMotifCigarP03692MF_04154258) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154258, CONCAT('^(?:-*[^-]){', STR(((522 - ?templateMotifSequenceMatchBeginPositionP03692259) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1270) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154260, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154260) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154260, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154260) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), '')))), '[^-]', ''))) AS ?step2271) . BIND(((?step2271 + ?targetMotifMatchRegionMatchBeginPositionMF_04154261) - 1) AS ?thisPositionOn97) . BIND(?thisPositionOn97 AS ?thisPositionOn98) . BIND(?this AS ?pfs3t272) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse96) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn97, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_04154a94')) AS ?annotation94) . BIND(?this AS ?pfs93) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch277 faldo:location ?templateMotifSequenceMatchRegionP03692278 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03692280 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03692MF_04154273 . ?templateMotifSequenceMatchRegionP03692278 faldo:begin ?templateMotifSequenceMatchBeginP03692279 . ?templateMotifSequenceMatchBeginP03692279 faldo:position ?templateMotifSequenceMatchBeginPositionP03692274 ; faldo:reference isoform:P03692-1 . ?templateMotifSequenceProfileAlignmentOperationP03692280 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . ?targetMotifMatch281 faldo:location ?targetMotifMatchRegionMatch282 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04154284 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03692MF_04154275 . ?targetMotifMatchRegionMatch282 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04154283 . ?targetMotifMatchRegionMatchBeginMF_04154283 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04154276 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04154284 edam:has_input signature:MF_04154 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03692MF_04154273, 1, (STRLEN(?templateMotifCigarP03692MF_04154273) - STRLEN(REPLACE(?templateMotifCigarP03692MF_04154273, CONCAT('^(?:-*[^-]){', STR(((535 - ?templateMotifSequenceMatchBeginPositionP03692274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1285) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03692MF_04154275, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154275) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03692MF_04154275, 1, (STRLEN(?targetMotifMatchCigarP03692MF_04154275) - STRLEN(REPLACE(?targetMotifMatchCigarP03692MF_04154275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), '')))), '[^-]', ''))) AS ?step2286) . BIND(((?step2286 + ?targetMotifMatchRegionMatchBeginPositionMF_04154276) - 1) AS ?thisPositionOn103) . BIND(?thisPositionOn103 AS ?thisPositionOn104) . BIND(?this AS ?pfs3t287) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb101) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse102) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_04154a100')) AS ?annotation100) . BIND(?this AS ?pfs99) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag288) . } BIND(IF(BOUND(?tagFTGRP_2), ?caseWithTag288, ?UNBOUND_VARIABLE) AS ?case5) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag289) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag289, ?UNBOUND_VARIABLE) AS ?case6) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:110456 . BIND(?this AS ?case7) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag290) . } BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag290, ?UNBOUND_VARIABLE) AS ?case8) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:110456 . })) . BIND(?this AS ?case9) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag291) . } BIND(IF((BOUND(?tagFTGRP_2) || BOUND(?tagFTGRP_1)), ?caseWithTag291, ?UNBOUND_VARIABLE) AS ?case10) . }