CONSTRUCT { _:985047 up:source unirule:MF_04203 . _:985048 up:source unirule:MF_04203 . _:985049 up:source unirule:MF_04203 . _:985050 up:source unirule:MF_04203 . _:985051 up:source unirule:MF_04203 . _:985052 up:source unirule:MF_04203 . _:985053 up:source unirule:MF_04203 . _:985054 up:source unirule:MF_04203 . _:985055 up:source unirule:MF_04203 . _:985056 up:source unirule:MF_04203 . _:985057 up:source unirule:MF_04203 . _:985058 up:source unirule:MF_04203 . _:985059 up:source unirule:MF_04203 . _:985060 up:source unirule:MF_04203 . _:985061 up:source unirule:MF_04203 . _:985062 up:source unirule:MF_04203 . _:985063 up:source unirule:MF_04203 . _:985064 up:source unirule:MF_04203 . _:985065 up:source unirule:MF_04203 . _:985066 up:source unirule:MF_04203 . _:985067 up:source unirule:MF_04203 . _:985068 up:source unirule:MF_04203 . _:985069 up:source unirule:MF_04203 . _:985070 up:source unirule:MF_04203 . _:985071 up:source unirule:MF_04203 . _:985072 up:source unirule:MF_04203 . _:985073 up:source unirule:MF_04203 . _:985074 up:source unirule:MF_04203 . _:985075 up:source unirule:MF_04203 . _:985076 up:source unirule:MF_04203 . _:985077 up:source unirule:MF_04203 . ?this up:alternativeName ?name1 , ?name2 , ?name3 ; up:annotation ?annotation5 , ?annotation6 , ?annotation7 , ?annotation10 ; up:classifiedWith GO:0016020 , GO:0019031 , GO:0030430 , GO:0039660 , GO:0044178 , GO:0055036 , keyword:1040 , keyword:1043 , keyword:1133 , keyword:261 , keyword:325 , keyword:468 , keyword:472 , keyword:812 , keyword:946 ; up:recommendedName ?name0 . ?name0 up:fullName 'Membrane protein' ; up:shortName 'M protein' ; rdf:type up:Structured_Name . ?name1 up:fullName 'E1 glycoprotein' ; rdf:type up:Structured_Name . ?name2 up:fullName 'Matrix glycoprotein' ; rdf:type up:Structured_Name . ?name3 up:fullName 'Membrane glycoprotein' ; rdf:type up:Structured_Name . ?gene4 skos:prefLabel 'M' . ?annotation5 a up:Function_Annotation ; rdfs:comment 'Component of the viral envelope that plays a central role in virus morphogenesis and assembly via its interactions with other viral proteins.' . ?annotation6 a up:Subunit_Annotation ; rdfs:comment 'Homomultimer. Interacts with envelope E protein in the budding compartment of the host cell, which is located between endoplasmic reticulum and the Golgi complex. Forms a complex with HE and S proteins. Interacts with nucleocapsid N protein. This interaction probably participates in RNA packaging into the virus.' . ?annotation7 a up:Subcellular_Location_Annotation ; rdfs:comment 'Largely embedded in the lipid bilayer' . ?annotation7li8 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation7li9 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation10 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the gammacoronaviruses M protein family.' . ?pfs11 up:annotation ?annotation12 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; rdf:type up:Topological_Domain_Annotation ; rdfs:comment 'Virion surface' . ?pfsb13 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb19 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; rdf:type up:Topological_Domain_Annotation ; rdfs:comment 'Intravirion' . ?pfsb25 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfs29 up:annotation ?annotation30 . ?annotation30 faldo:begin ?pfsb31 ; faldo:end ?pfse32 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb31 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse32 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; rdf:type up:Topological_Domain_Annotation ; rdfs:comment 'Virion surface' . ?pfsb37 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfs41 up:annotation ?annotation42 . ?annotation42 faldo:begin ?pfsb43 ; faldo:end ?pfse44 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb43 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse44 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; rdf:type up:Topological_Domain_Annotation ; rdfs:comment 'Intravirion' . ?pfsb49 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . _:985078 a rdf:Statement ; up:attribution _:985047 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:985079 a rdf:Statement ; up:attribution _:985048 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:985080 a rdf:Statement ; up:attribution _:985049 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:985081 a rdf:Statement ; up:attribution _:985050 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name3 . _:985082 a rdf:Statement ; up:attribution _:985051 ; rdf:subject ?gene4 ; rdf:predicate up:encodedBy ; rdf:object ?gene4 . _:985083 a rdf:Statement ; up:attribution _:985052 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:985084 a rdf:Statement ; up:attribution _:985053 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:985085 a rdf:Statement ; up:attribution _:985054 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:985086 a rdf:Statement ; up:attribution _:985055 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:985087 a rdf:Statement ; up:attribution _:985056 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:325 . _:985088 a rdf:Statement ; up:attribution _:985057 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1040 . _:985089 a rdf:Statement ; up:attribution _:985058 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1043 . _:985090 a rdf:Statement ; up:attribution _:985059 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:985091 a rdf:Statement ; up:attribution _:985060 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:985092 a rdf:Statement ; up:attribution _:985061 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . _:985093 a rdf:Statement ; up:attribution _:985062 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:261 . _:985094 a rdf:Statement ; up:attribution _:985063 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:468 . _:985095 a rdf:Statement ; up:attribution _:985064 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:946 . _:985096 a rdf:Statement ; up:attribution _:985065 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0030430 . _:985097 a rdf:Statement ; up:attribution _:985066 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0044178 . _:985098 a rdf:Statement ; up:attribution _:985067 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016020 . _:985099 a rdf:Statement ; up:attribution _:985068 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019031 . _:985100 a rdf:Statement ; up:attribution _:985069 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0055036 . _:985101 a rdf:Statement ; up:attribution _:985070 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0039660 . _:985102 a rdf:Statement ; up:source unirule:MF_04203 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:985103 a rdf:Statement ; up:attribution _:985071 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:985104 a rdf:Statement ; up:source unirule:MF_04203 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:985105 a rdf:Statement ; up:attribution _:985072 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:985106 a rdf:Statement ; up:source unirule:MF_04203 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:985107 a rdf:Statement ; up:attribution _:985073 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:985108 a rdf:Statement ; up:source unirule:MF_04203 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:985109 a rdf:Statement ; up:attribution _:985074 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:985110 a rdf:Statement ; up:source unirule:MF_04203 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:985111 a rdf:Statement ; up:attribution _:985075 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:985112 a rdf:Statement ; up:source unirule:MF_04203 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:985113 a rdf:Statement ; up:attribution _:985076 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:985114 a rdf:Statement ; up:source unirule:MF_04203 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:985115 a rdf:Statement ; up:attribution _:985077 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04203 #Rule MF_04203 Created by:? on:2018-03-26 Modified by:Edouard de Castro on:2022-09-29 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04203 . ?thisOrganism rdfs:subClassOf+ taxon:694013 . BIND(URI(CONCAT(STR(?this), '#MF_04203a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_04203a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_04203a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_04203a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_04203a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_04203a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_04203a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_04203a10')) AS ?annotation10) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch57 faldo:location ?templateMotifSequenceMatchRegionP6960158 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6960160 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69601MF_0420353 . ?templateMotifSequenceMatchRegionP6960158 faldo:begin ?templateMotifSequenceMatchBeginP6960159 . ?templateMotifSequenceMatchBeginP6960159 faldo:position ?templateMotifSequenceMatchBeginPositionP6960154 ; faldo:reference isoform:P69601-1 . ?templateMotifSequenceProfileAlignmentOperationP6960160 edam:has_input signature:MF_04203 ; rdf:type edam:operation_0300 . ?targetMotifMatch61 faldo:location ?targetMotifMatchRegionMatch62 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0420364 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69601MF_0420355 . ?targetMotifMatchRegionMatch62 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0420363 . ?targetMotifMatchRegionMatchBeginMF_0420363 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0420356 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0420364 edam:has_input signature:MF_04203 ; rdf:type edam:operation_0300 . BIND(1 AS ?thisPositionOn15) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69601MF_0420353, 1, (STRLEN(?templateMotifCigarP69601MF_0420353) - STRLEN(REPLACE(?templateMotifCigarP69601MF_0420353, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionP6960154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69601MF_0420355, 1, (STRLEN(?targetMotifMatchCigarP69601MF_0420355) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_0420355, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69601MF_0420355, 1, (STRLEN(?targetMotifMatchCigarP69601MF_0420355) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_0420355, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) . BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0420356) - 1) AS ?thisPositionOn16) . BIND(?this AS ?pfs1t67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) . FILTER ((BOUND(?thisPositionOn15) && BOUND(?thisPositionOn16))) . BIND(URI(CONCAT(STR(?this), '#MF_04203a12')) AS ?annotation12) . BIND(?this AS ?pfs11) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP6960173 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6960175 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69601MF_0420368 . ?templateMotifSequenceMatchRegionP6960173 faldo:begin ?templateMotifSequenceMatchBeginP6960174 . ?templateMotifSequenceMatchBeginP6960174 faldo:position ?templateMotifSequenceMatchBeginPositionP6960169 ; faldo:reference isoform:P69601-1 . ?templateMotifSequenceProfileAlignmentOperationP6960175 edam:has_input signature:MF_04203 ; rdf:type edam:operation_0300 . ?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0420379 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69601MF_0420370 . ?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0420378 . ?targetMotifMatchRegionMatchBeginMF_0420378 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0420371 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0420379 edam:has_input signature:MF_04203 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69601MF_0420368, 1, (STRLEN(?templateMotifCigarP69601MF_0420368) - STRLEN(REPLACE(?templateMotifCigarP69601MF_0420368, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP6960169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69601MF_0420370, 1, (STRLEN(?targetMotifMatchCigarP69601MF_0420370) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_0420370, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69601MF_0420370, 1, (STRLEN(?targetMotifMatchCigarP69601MF_0420370) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_0420370, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) . BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0420371) - 1) AS ?thisPositionOn21) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69601MF_0420368, 1, (STRLEN(?templateMotifCigarP69601MF_0420368) - STRLEN(REPLACE(?templateMotifCigarP69601MF_0420368, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionP6960169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69601MF_0420370, 1, (STRLEN(?targetMotifMatchCigarP69601MF_0420370) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_0420370, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69601MF_0420370, 1, (STRLEN(?targetMotifMatchCigarP69601MF_0420370) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_0420370, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) . BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0420371) - 1) AS ?thisPositionOn22) . BIND(?this AS ?pfs1t84) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) . FILTER ((BOUND(?thisPositionOn21) && BOUND(?thisPositionOn22))) . BIND(URI(CONCAT(STR(?this), '#MF_04203a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionP6960190 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6960192 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69601MF_0420385 . ?templateMotifSequenceMatchRegionP6960190 faldo:begin ?templateMotifSequenceMatchBeginP6960191 . ?templateMotifSequenceMatchBeginP6960191 faldo:position ?templateMotifSequenceMatchBeginPositionP6960186 ; faldo:reference isoform:P69601-1 . ?templateMotifSequenceProfileAlignmentOperationP6960192 edam:has_input signature:MF_04203 ; rdf:type edam:operation_0300 . ?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0420396 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69601MF_0420387 . ?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0420395 . ?targetMotifMatchRegionMatchBeginMF_0420395 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0420388 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0420396 edam:has_input signature:MF_04203 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69601MF_0420385, 1, (STRLEN(?templateMotifCigarP69601MF_0420385) - STRLEN(REPLACE(?templateMotifCigarP69601MF_0420385, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionP6960186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69601MF_0420387, 1, (STRLEN(?targetMotifMatchCigarP69601MF_0420387) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_0420387, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69601MF_0420387, 1, (STRLEN(?targetMotifMatchCigarP69601MF_0420387) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_0420387, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) . BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0420388) - 1) AS ?thisPositionOn27) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69601MF_0420385, 1, (STRLEN(?templateMotifCigarP69601MF_0420385) - STRLEN(REPLACE(?templateMotifCigarP69601MF_0420385, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionP6960186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69601MF_0420387, 1, (STRLEN(?targetMotifMatchCigarP69601MF_0420387) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_0420387, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69601MF_0420387, 1, (STRLEN(?targetMotifMatchCigarP69601MF_0420387) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_0420387, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) . BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0420388) - 1) AS ?thisPositionOn28) . BIND(?this AS ?pfs1t101) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) . FILTER ((BOUND(?thisPositionOn27) && BOUND(?thisPositionOn28))) . BIND(URI(CONCAT(STR(?this), '#MF_04203a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionP69601107 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69601109 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69601MF_04203102 . ?templateMotifSequenceMatchRegionP69601107 faldo:begin ?templateMotifSequenceMatchBeginP69601108 . ?templateMotifSequenceMatchBeginP69601108 faldo:position ?templateMotifSequenceMatchBeginPositionP69601103 ; faldo:reference isoform:P69601-1 . ?templateMotifSequenceProfileAlignmentOperationP69601109 edam:has_input signature:MF_04203 ; rdf:type edam:operation_0300 . ?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04203113 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69601MF_04203104 . ?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04203112 . ?targetMotifMatchRegionMatchBeginMF_04203112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04203105 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04203113 edam:has_input signature:MF_04203 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69601MF_04203102, 1, (STRLEN(?templateMotifCigarP69601MF_04203102) - STRLEN(REPLACE(?templateMotifCigarP69601MF_04203102, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionP69601103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69601MF_04203104, 1, (STRLEN(?targetMotifMatchCigarP69601MF_04203104) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_04203104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69601MF_04203104, 1, (STRLEN(?targetMotifMatchCigarP69601MF_04203104) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_04203104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) . BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_04203105) - 1) AS ?thisPositionOn33) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69601MF_04203102, 1, (STRLEN(?templateMotifCigarP69601MF_04203102) - STRLEN(REPLACE(?templateMotifCigarP69601MF_04203102, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionP69601103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69601MF_04203104, 1, (STRLEN(?targetMotifMatchCigarP69601MF_04203104) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_04203104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69601MF_04203104, 1, (STRLEN(?targetMotifMatchCigarP69601MF_04203104) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_04203104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) . BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_04203105) - 1) AS ?thisPositionOn34) . BIND(?this AS ?pfs1t118) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) . FILTER ((BOUND(?thisPositionOn33) && BOUND(?thisPositionOn34))) . BIND(URI(CONCAT(STR(?this), '#MF_04203a30')) AS ?annotation30) . BIND(?this AS ?pfs29) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionP69601124 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69601126 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69601MF_04203119 . ?templateMotifSequenceMatchRegionP69601124 faldo:begin ?templateMotifSequenceMatchBeginP69601125 . ?templateMotifSequenceMatchBeginP69601125 faldo:position ?templateMotifSequenceMatchBeginPositionP69601120 ; faldo:reference isoform:P69601-1 . ?templateMotifSequenceProfileAlignmentOperationP69601126 edam:has_input signature:MF_04203 ; rdf:type edam:operation_0300 . ?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04203130 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69601MF_04203121 . ?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04203129 . ?targetMotifMatchRegionMatchBeginMF_04203129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04203122 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04203130 edam:has_input signature:MF_04203 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69601MF_04203119, 1, (STRLEN(?templateMotifCigarP69601MF_04203119) - STRLEN(REPLACE(?templateMotifCigarP69601MF_04203119, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionP69601120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69601MF_04203121, 1, (STRLEN(?targetMotifMatchCigarP69601MF_04203121) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_04203121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69601MF_04203121, 1, (STRLEN(?targetMotifMatchCigarP69601MF_04203121) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_04203121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) . BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_04203122) - 1) AS ?thisPositionOn39) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69601MF_04203119, 1, (STRLEN(?templateMotifCigarP69601MF_04203119) - STRLEN(REPLACE(?templateMotifCigarP69601MF_04203119, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionP69601120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69601MF_04203121, 1, (STRLEN(?targetMotifMatchCigarP69601MF_04203121) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_04203121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69601MF_04203121, 1, (STRLEN(?targetMotifMatchCigarP69601MF_04203121) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_04203121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) . BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_04203122) - 1) AS ?thisPositionOn40) . BIND(?this AS ?pfs1t135) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) . FILTER ((BOUND(?thisPositionOn39) && BOUND(?thisPositionOn40))) . BIND(URI(CONCAT(STR(?this), '#MF_04203a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch140 faldo:location ?templateMotifSequenceMatchRegionP69601141 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69601143 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69601MF_04203136 . ?templateMotifSequenceMatchRegionP69601141 faldo:begin ?templateMotifSequenceMatchBeginP69601142 . ?templateMotifSequenceMatchBeginP69601142 faldo:position ?templateMotifSequenceMatchBeginPositionP69601137 ; faldo:reference isoform:P69601-1 . ?templateMotifSequenceProfileAlignmentOperationP69601143 edam:has_input signature:MF_04203 ; rdf:type edam:operation_0300 . ?targetMotifMatch144 faldo:location ?targetMotifMatchRegionMatch145 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04203147 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69601MF_04203138 . ?targetMotifMatchRegionMatch145 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04203146 . ?targetMotifMatchRegionMatchBeginMF_04203146 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04203139 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04203147 edam:has_input signature:MF_04203 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69601MF_04203136, 1, (STRLEN(?templateMotifCigarP69601MF_04203136) - STRLEN(REPLACE(?templateMotifCigarP69601MF_04203136, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionP69601137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69601MF_04203138, 1, (STRLEN(?targetMotifMatchCigarP69601MF_04203138) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_04203138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69601MF_04203138, 1, (STRLEN(?targetMotifMatchCigarP69601MF_04203138) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_04203138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) . BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_04203139) - 1) AS ?thisPositionOn45) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69601MF_04203136, 1, (STRLEN(?templateMotifCigarP69601MF_04203136) - STRLEN(REPLACE(?templateMotifCigarP69601MF_04203136, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionP69601137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69601MF_04203138, 1, (STRLEN(?targetMotifMatchCigarP69601MF_04203138) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_04203138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69601MF_04203138, 1, (STRLEN(?targetMotifMatchCigarP69601MF_04203138) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_04203138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) . BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_04203139) - 1) AS ?thisPositionOn46) . BIND(?this AS ?pfs1t152) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) . FILTER ((BOUND(?thisPositionOn45) && BOUND(?thisPositionOn46))) . BIND(URI(CONCAT(STR(?this), '#MF_04203a42')) AS ?annotation42) . BIND(?this AS ?pfs41) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionP69601158 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69601160 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69601MF_04203153 . ?templateMotifSequenceMatchRegionP69601158 faldo:begin ?templateMotifSequenceMatchBeginP69601159 . ?templateMotifSequenceMatchBeginP69601159 faldo:position ?templateMotifSequenceMatchBeginPositionP69601154 ; faldo:reference isoform:P69601-1 . ?templateMotifSequenceProfileAlignmentOperationP69601160 edam:has_input signature:MF_04203 ; rdf:type edam:operation_0300 . ?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04203164 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69601MF_04203155 . ?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04203163 . ?targetMotifMatchRegionMatchBeginMF_04203163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04203156 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04203164 edam:has_input signature:MF_04203 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69601MF_04203153, 1, (STRLEN(?templateMotifCigarP69601MF_04203153) - STRLEN(REPLACE(?templateMotifCigarP69601MF_04203153, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP69601154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69601MF_04203155, 1, (STRLEN(?targetMotifMatchCigarP69601MF_04203155) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_04203155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69601MF_04203155, 1, (STRLEN(?targetMotifMatchCigarP69601MF_04203155) - STRLEN(REPLACE(?targetMotifMatchCigarP69601MF_04203155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) . BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_04203156) - 1) AS ?thisPositionOn51) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn52) . BIND(?this AS ?pfs1t167) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse50) . FILTER ((BOUND(?thisPositionOn51) && BOUND(?thisPositionOn52))) . BIND(URI(CONCAT(STR(?this), '#MF_04203a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } }