CONSTRUCT { _:1783 up:source unirule:MF_00005 . _:1784 up:source unirule:MF_00005 . _:1785 up:source unirule:MF_00005 . _:1786 up:source unirule:MF_00005 . _:1787 up:source unirule:MF_00005 . _:1788 up:source unirule:MF_00005 . _:1789 up:source unirule:MF_00005 . _:1790 up:source unirule:MF_00005 . _:1791 up:source unirule:MF_00005 . _:1792 up:source unirule:MF_00005 . _:1793 up:source unirule:MF_00005 . _:1794 up:source unirule:MF_00005 . _:1795 up:source unirule:MF_00005 . _:1796 up:source unirule:MF_00005 . _:1797 up:source unirule:MF_00005 . _:1798 up:source unirule:MF_00005 . _:1799 up:source unirule:MF_00005 . _:1800 up:source unirule:MF_00005 . _:1801 up:source unirule:MF_00005 . _:1802 up:source unirule:MF_00005 . _:1803 up:source unirule:MF_00005 . _:1804 up:source unirule:MF_00005 . _:1805 up:source unirule:MF_00005 . _:1806 up:source unirule:MF_00005 . _:1807 up:source unirule:MF_00005 . _:1808 up:source unirule:MF_00005 . _:1809 up:source unirule:MF_00005 . _:1810 up:source unirule:MF_00005 . _:1811 up:source unirule:MF_00005 . _:1812 up:source unirule:MF_00005 . _:1813 up:source unirule:MF_00005 . _:1814 up:source unirule:MF_00005 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation5 , ?annotation6 , ?annotation7 , ?annotation9 ; up:classifiedWith GO:0004055 , GO:0005524 , GO:0005737 , GO:0006526 , keyword:28 , keyword:436 , keyword:547 , keyword:55 , keyword:67 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '6.3.4.5' ; up:fullName 'Argininosuccinate synthase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Citrulline--aspartate ligase' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'argG' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/10932>; up:enzymeClass <http://purl.uniprot.org/enzyme/6.3.4.5>. ?annotation5 a up:Pathway_Annotation ; rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 2/3.' . ?annotation6 a up:Subunit_Annotation ; rdfs:comment 'Homotetramer.' . ?annotation7 a up:Subcellular_Location_Annotation . ?annotation7li8 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation9 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the argininosuccinate synthase family. Type 1 subfamily.' . ?pfs10 up:annotation ?annotation11 . ?annotation11 faldo:begin ?pfsb12 ; faldo:end ?pfse13 ; up:ligand ?ligand14 ; rdf:type up:Binding_Site_Annotation . ?pfsb12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?ligand14 rdfs:subClassOf chebi:30616 . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; up:ligand ?ligand21 ; rdf:type up:Binding_Site_Annotation . ?pfsb19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?ligand21 rdfs:subClassOf chebi:30616 . ?pfs24 up:annotation ?annotation25 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; up:ligand ?ligand28 ; rdf:type up:Binding_Site_Annotation . ?pfsb26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?ligand28 rdfs:subClassOf chebi:57743 . ?pfs31 up:annotation ?annotation32 . ?annotation32 faldo:begin ?pfsb33 ; faldo:end ?pfse34 ; up:ligand ?ligand35 ; rdf:type up:Binding_Site_Annotation . ?pfsb33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?ligand35 rdfs:subClassOf chebi:57743 . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; up:ligand ?ligand42 ; rdf:type up:Binding_Site_Annotation . ?pfsb40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?ligand42 rdfs:subClassOf chebi:30616 . ?pfs45 up:annotation ?annotation46 . ?annotation46 faldo:begin ?pfsb47 ; faldo:end ?pfse48 ; up:ligand ?ligand49 ; rdf:type up:Binding_Site_Annotation . ?pfsb47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfse48 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?ligand49 rdfs:subClassOf chebi:29991 . ?pfs52 up:annotation ?annotation53 . ?annotation53 faldo:begin ?pfsb54 ; faldo:end ?pfse55 ; up:ligand ?ligand56 ; rdf:type up:Binding_Site_Annotation . ?pfsb54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfse55 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?ligand56 rdfs:subClassOf chebi:57743 . ?pfs59 up:annotation ?annotation60 . ?annotation60 faldo:begin ?pfsb61 ; faldo:end ?pfse62 ; up:ligand ?ligand63 ; rdf:type up:Binding_Site_Annotation . ?pfsb61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?pfse62 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?ligand63 rdfs:subClassOf chebi:29991 . ?pfs66 up:annotation ?annotation67 . ?annotation67 faldo:begin ?pfsb68 ; faldo:end ?pfse69 ; up:ligand ?ligand70 ; rdf:type up:Binding_Site_Annotation . ?pfsb68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?pfse69 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?ligand70 rdfs:subClassOf chebi:29991 . ?pfs73 up:annotation ?annotation74 . ?annotation74 faldo:begin ?pfsb75 ; faldo:end ?pfse76 ; up:ligand ?ligand77 ; rdf:type up:Binding_Site_Annotation . ?pfsb75 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?pfse76 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?ligand77 rdfs:subClassOf chebi:57743 . ?pfs80 up:annotation ?annotation81 . ?annotation81 faldo:begin ?pfsb82 ; faldo:end ?pfse83 ; up:ligand ?ligand84 ; rdf:type up:Binding_Site_Annotation . ?pfsb82 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?pfse83 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . ?ligand84 rdfs:subClassOf chebi:57743 . ?pfs87 up:annotation ?annotation88 . ?annotation88 faldo:begin ?pfsb89 ; faldo:end ?pfse90 ; up:ligand ?ligand91 ; rdf:type up:Binding_Site_Annotation . ?pfsb89 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?pfse90 faldo:position ?thisPositionOn93 ; rdf:type faldo:ExactPosition . ?ligand91 rdfs:subClassOf chebi:57743 . ?pfs94 up:annotation ?annotation95 . ?annotation95 faldo:begin ?pfsb96 ; faldo:end ?pfse97 ; up:ligand ?ligand98 ; rdf:type up:Binding_Site_Annotation . ?pfsb96 faldo:position ?thisPositionOn99 ; rdf:type faldo:ExactPosition . ?pfse97 faldo:position ?thisPositionOn100 ; rdf:type faldo:ExactPosition . ?ligand98 rdfs:subClassOf chebi:57743 . ?pfs101 up:annotation ?annotation102 . ?annotation102 faldo:begin ?pfsb103 ; faldo:end ?pfse104 ; up:ligand ?ligand105 ; rdf:type up:Binding_Site_Annotation . ?pfsb103 faldo:position ?thisPositionOn106 ; rdf:type faldo:ExactPosition . ?pfse104 faldo:position ?thisPositionOn107 ; rdf:type faldo:ExactPosition . ?ligand105 rdfs:subClassOf chebi:57743 . _:1815 a rdf:Statement ; up:attribution _:1783 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:1816 a rdf:Statement ; up:attribution _:1784 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:1817 a rdf:Statement ; up:attribution _:1785 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:1818 a rdf:Statement ; up:attribution _:1786 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:1819 a rdf:Statement ; up:attribution _:1787 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:1820 a rdf:Statement ; up:attribution _:1788 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:1821 a rdf:Statement ; up:attribution _:1789 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:1822 a rdf:Statement ; up:attribution _:1790 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:1823 a rdf:Statement ; up:attribution _:1791 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:1824 a rdf:Statement ; up:attribution _:1792 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:28 . _:1825 a rdf:Statement ; up:attribution _:1793 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:55 . _:1826 a rdf:Statement ; up:attribution _:1794 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:436 . _:1827 a rdf:Statement ; up:attribution _:1795 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:1828 a rdf:Statement ; up:attribution _:1796 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:1829 a rdf:Statement ; up:attribution _:1797 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004055 . _:1830 a rdf:Statement ; up:attribution _:1798 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:1831 a rdf:Statement ; up:attribution _:1799 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006526 . _:1832 a rdf:Statement ; up:attribution _:1800 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:1833 a rdf:Statement ; up:source unirule:MF_00005 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:1834 a rdf:Statement ; up:attribution _:1801 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:1835 a rdf:Statement ; up:source unirule:MF_00005 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:1836 a rdf:Statement ; up:attribution _:1802 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:1837 a rdf:Statement ; up:source unirule:MF_00005 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:1838 a rdf:Statement ; up:attribution _:1803 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:1839 a rdf:Statement ; up:source unirule:MF_00005 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:1840 a rdf:Statement ; up:attribution _:1804 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:1841 a rdf:Statement ; up:source unirule:MF_00005 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:1842 a rdf:Statement ; up:attribution _:1805 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:1843 a rdf:Statement ; up:source unirule:MF_00005 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:1844 a rdf:Statement ; up:attribution _:1806 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:1845 a rdf:Statement ; up:source unirule:MF_00005 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:1846 a rdf:Statement ; up:attribution _:1807 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:1847 a rdf:Statement ; up:source unirule:MF_00005 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:1848 a rdf:Statement ; up:attribution _:1808 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:1849 a rdf:Statement ; up:source unirule:MF_00005 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:1850 a rdf:Statement ; up:attribution _:1809 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:1851 a rdf:Statement ; up:source unirule:MF_00005 ; rdf:subject ?pfs73 ; rdf:predicate up:annotation ; rdf:object ?annotation74 . _:1852 a rdf:Statement ; up:attribution _:1810 ; rdf:subject ?pfs73 ; rdf:predicate up:annotation ; rdf:object ?annotation74 . _:1853 a rdf:Statement ; up:source unirule:MF_00005 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:1854 a rdf:Statement ; up:attribution _:1811 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:1855 a rdf:Statement ; up:source unirule:MF_00005 ; rdf:subject ?pfs87 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:1856 a rdf:Statement ; up:attribution _:1812 ; rdf:subject ?pfs87 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:1857 a rdf:Statement ; up:source unirule:MF_00005 ; rdf:subject ?pfs94 ; rdf:predicate up:annotation ; rdf:object ?annotation95 . _:1858 a rdf:Statement ; up:attribution _:1813 ; rdf:subject ?pfs94 ; rdf:predicate up:annotation ; rdf:object ?annotation95 . _:1859 a rdf:Statement ; up:source unirule:MF_00005 ; rdf:subject ?pfs101 ; rdf:predicate up:annotation ; rdf:object ?annotation102 . _:1860 a rdf:Statement ; up:attribution _:1814 ; rdf:subject ?pfs101 ; rdf:predicate up:annotation ; rdf:object ?annotation102 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00005 #Rule MF_00005 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-11-05 VALUES ?supertaxon108 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00005 . ?thisOrganism rdfs:subClassOf+ ?supertaxon108 . BIND(URI(CONCAT(STR(?this), '#MF_00005a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00005a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00005a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00005a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00005a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00005a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00005a9')) AS ?annotation9) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP59846114 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP59846116 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP59846MF_00005109 . ?templateMotifSequenceMatchRegionP59846114 faldo:begin ?templateMotifSequenceMatchBeginP59846115 . ?templateMotifSequenceMatchBeginP59846115 faldo:position ?templateMotifSequenceMatchBeginPositionP59846110 ; faldo:reference isoform:P59846-1 . ?templateMotifSequenceProfileAlignmentOperationP59846116 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . ?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00005120 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP59846MF_00005111 . ?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00005119 . ?targetMotifMatchRegionMatchBeginMF_00005119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00005112 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00005120 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59846MF_00005109, 1, (STRLEN(?templateMotifCigarP59846MF_00005109) - STRLEN(REPLACE(?templateMotifCigarP59846MF_00005109, CONCAT('^(?:-*[^-]){', STR(((6 - ?templateMotifSequenceMatchBeginPositionP59846110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59846MF_00005111, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005111) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59846MF_00005111, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005111) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) . BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_00005112) - 1) AS ?thisPositionOn15) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59846MF_00005109, 1, (STRLEN(?templateMotifCigarP59846MF_00005109) - STRLEN(REPLACE(?templateMotifCigarP59846MF_00005109, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP59846110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59846MF_00005111, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005111) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59846MF_00005111, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005111) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) . BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00005112) - 1) AS ?thisPositionOn16) . BIND(?this AS ?pfs1t125) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) . FILTER ((BOUND(?thisPositionOn15) && BOUND(?thisPositionOn16))) . BIND(URI(CONCAT(STR(?this), '#MF_00005a11')) AS ?annotation11) . BIND(?this AS ?pfs10) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionP59846131 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP59846133 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP59846MF_00005126 . ?templateMotifSequenceMatchRegionP59846131 faldo:begin ?templateMotifSequenceMatchBeginP59846132 . ?templateMotifSequenceMatchBeginP59846132 faldo:position ?templateMotifSequenceMatchBeginPositionP59846127 ; faldo:reference isoform:P59846-1 . ?templateMotifSequenceProfileAlignmentOperationP59846133 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . ?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00005137 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP59846MF_00005128 . ?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00005136 . ?targetMotifMatchRegionMatchBeginMF_00005136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00005129 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00005137 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59846MF_00005126, 1, (STRLEN(?templateMotifCigarP59846MF_00005126) - STRLEN(REPLACE(?templateMotifCigarP59846MF_00005126, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP59846127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59846MF_00005128, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005128) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59846MF_00005128, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005128) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) . BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_00005129) - 1) AS ?thisPositionOn22) . BIND(?thisPositionOn22 AS ?thisPositionOn23) . BIND(?this AS ?pfs1t140) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'A')) . BIND(URI(CONCAT(STR(?this), '#MF_00005a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionP59846146 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP59846148 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP59846MF_00005141 . ?templateMotifSequenceMatchRegionP59846146 faldo:begin ?templateMotifSequenceMatchBeginP59846147 . ?templateMotifSequenceMatchBeginP59846147 faldo:position ?templateMotifSequenceMatchBeginPositionP59846142 ; faldo:reference isoform:P59846-1 . ?templateMotifSequenceProfileAlignmentOperationP59846148 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . ?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00005152 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP59846MF_00005143 . ?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00005151 . ?targetMotifMatchRegionMatchBeginMF_00005151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00005144 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00005152 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59846MF_00005141, 1, (STRLEN(?templateMotifCigarP59846MF_00005141) - STRLEN(REPLACE(?templateMotifCigarP59846MF_00005141, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionP59846142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59846MF_00005143, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005143) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59846MF_00005143, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005143) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) . BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_00005144) - 1) AS ?thisPositionOn29) . BIND(?thisPositionOn29 AS ?thisPositionOn30) . BIND(?this AS ?pfs1t155) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_00005a25')) AS ?annotation25) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionP59846161 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP59846163 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP59846MF_00005156 . ?templateMotifSequenceMatchRegionP59846161 faldo:begin ?templateMotifSequenceMatchBeginP59846162 . ?templateMotifSequenceMatchBeginP59846162 faldo:position ?templateMotifSequenceMatchBeginPositionP59846157 ; faldo:reference isoform:P59846-1 . ?templateMotifSequenceProfileAlignmentOperationP59846163 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . ?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00005167 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP59846MF_00005158 . ?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00005166 . ?targetMotifMatchRegionMatchBeginMF_00005166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00005159 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00005167 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59846MF_00005156, 1, (STRLEN(?templateMotifCigarP59846MF_00005156) - STRLEN(REPLACE(?templateMotifCigarP59846MF_00005156, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP59846157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59846MF_00005158, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005158) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59846MF_00005158, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005158) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) . BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_00005159) - 1) AS ?thisPositionOn36) . BIND(?thisPositionOn36 AS ?thisPositionOn37) . BIND(?this AS ?pfs1t170) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_00005a32')) AS ?annotation32) . BIND(?this AS ?pfs31) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionP59846176 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP59846178 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP59846MF_00005171 . ?templateMotifSequenceMatchRegionP59846176 faldo:begin ?templateMotifSequenceMatchBeginP59846177 . ?templateMotifSequenceMatchBeginP59846177 faldo:position ?templateMotifSequenceMatchBeginPositionP59846172 ; faldo:reference isoform:P59846-1 . ?templateMotifSequenceProfileAlignmentOperationP59846178 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . ?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00005182 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP59846MF_00005173 . ?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00005181 . ?targetMotifMatchRegionMatchBeginMF_00005181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00005174 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00005182 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59846MF_00005171, 1, (STRLEN(?templateMotifCigarP59846MF_00005171) - STRLEN(REPLACE(?templateMotifCigarP59846MF_00005171, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionP59846172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59846MF_00005173, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005173) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59846MF_00005173, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005173) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) . BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_00005174) - 1) AS ?thisPositionOn43) . BIND(?thisPositionOn43 AS ?thisPositionOn44) . BIND(?this AS ?pfs1t185) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_00005a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch190 faldo:location ?templateMotifSequenceMatchRegionP59846191 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP59846193 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP59846MF_00005186 . ?templateMotifSequenceMatchRegionP59846191 faldo:begin ?templateMotifSequenceMatchBeginP59846192 . ?templateMotifSequenceMatchBeginP59846192 faldo:position ?templateMotifSequenceMatchBeginPositionP59846187 ; faldo:reference isoform:P59846-1 . ?templateMotifSequenceProfileAlignmentOperationP59846193 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . ?targetMotifMatch194 faldo:location ?targetMotifMatchRegionMatch195 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00005197 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP59846MF_00005188 . ?targetMotifMatchRegionMatch195 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00005196 . ?targetMotifMatchRegionMatchBeginMF_00005196 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00005189 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00005197 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59846MF_00005186, 1, (STRLEN(?templateMotifCigarP59846MF_00005186) - STRLEN(REPLACE(?templateMotifCigarP59846MF_00005186, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionP59846187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59846MF_00005188, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005188) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59846MF_00005188, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005188) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) . BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_00005189) - 1) AS ?thisPositionOn50) . BIND(?thisPositionOn50 AS ?thisPositionOn51) . BIND(?this AS ?pfs1t200) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_00005a46')) AS ?annotation46) . BIND(?this AS ?pfs45) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch205 faldo:location ?templateMotifSequenceMatchRegionP59846206 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP59846208 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP59846MF_00005201 . ?templateMotifSequenceMatchRegionP59846206 faldo:begin ?templateMotifSequenceMatchBeginP59846207 . ?templateMotifSequenceMatchBeginP59846207 faldo:position ?templateMotifSequenceMatchBeginPositionP59846202 ; faldo:reference isoform:P59846-1 . ?templateMotifSequenceProfileAlignmentOperationP59846208 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . ?targetMotifMatch209 faldo:location ?targetMotifMatchRegionMatch210 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00005212 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP59846MF_00005203 . ?targetMotifMatchRegionMatch210 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00005211 . ?targetMotifMatchRegionMatchBeginMF_00005211 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00005204 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00005212 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59846MF_00005201, 1, (STRLEN(?templateMotifCigarP59846MF_00005201) - STRLEN(REPLACE(?templateMotifCigarP59846MF_00005201, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionP59846202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1213) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59846MF_00005203, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005203) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59846MF_00005203, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005203) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), '')))), '[^-]', ''))) AS ?step2214) . BIND(((?step2214 + ?targetMotifMatchRegionMatchBeginPositionMF_00005204) - 1) AS ?thisPositionOn57) . BIND(?thisPositionOn57 AS ?thisPositionOn58) . BIND(?this AS ?pfs1t215) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_00005a53')) AS ?annotation53) . BIND(?this AS ?pfs52) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch220 faldo:location ?templateMotifSequenceMatchRegionP59846221 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP59846223 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP59846MF_00005216 . ?templateMotifSequenceMatchRegionP59846221 faldo:begin ?templateMotifSequenceMatchBeginP59846222 . ?templateMotifSequenceMatchBeginP59846222 faldo:position ?templateMotifSequenceMatchBeginPositionP59846217 ; faldo:reference isoform:P59846-1 . ?templateMotifSequenceProfileAlignmentOperationP59846223 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . ?targetMotifMatch224 faldo:location ?targetMotifMatchRegionMatch225 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00005227 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP59846MF_00005218 . ?targetMotifMatchRegionMatch225 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00005226 . ?targetMotifMatchRegionMatchBeginMF_00005226 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00005219 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00005227 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59846MF_00005216, 1, (STRLEN(?templateMotifCigarP59846MF_00005216) - STRLEN(REPLACE(?templateMotifCigarP59846MF_00005216, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionP59846217) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1228) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59846MF_00005218, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005218) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59846MF_00005218, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005218) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), '')))), '[^-]', ''))) AS ?step2229) . BIND(((?step2229 + ?targetMotifMatchRegionMatchBeginPositionMF_00005219) - 1) AS ?thisPositionOn64) . BIND(?thisPositionOn64 AS ?thisPositionOn65) . BIND(?this AS ?pfs1t230) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_00005a60')) AS ?annotation60) . BIND(?this AS ?pfs59) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch235 faldo:location ?templateMotifSequenceMatchRegionP59846236 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP59846238 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP59846MF_00005231 . ?templateMotifSequenceMatchRegionP59846236 faldo:begin ?templateMotifSequenceMatchBeginP59846237 . ?templateMotifSequenceMatchBeginP59846237 faldo:position ?templateMotifSequenceMatchBeginPositionP59846232 ; faldo:reference isoform:P59846-1 . ?templateMotifSequenceProfileAlignmentOperationP59846238 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . ?targetMotifMatch239 faldo:location ?targetMotifMatchRegionMatch240 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00005242 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP59846MF_00005233 . ?targetMotifMatchRegionMatch240 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00005241 . ?targetMotifMatchRegionMatchBeginMF_00005241 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00005234 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00005242 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59846MF_00005231, 1, (STRLEN(?templateMotifCigarP59846MF_00005231) - STRLEN(REPLACE(?templateMotifCigarP59846MF_00005231, CONCAT('^(?:-*[^-]){', STR(((121 - ?templateMotifSequenceMatchBeginPositionP59846232) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1243) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59846MF_00005233, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005233) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59846MF_00005233, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005233) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), '')))), '[^-]', ''))) AS ?step2244) . BIND(((?step2244 + ?targetMotifMatchRegionMatchBeginPositionMF_00005234) - 1) AS ?thisPositionOn71) . BIND(?thisPositionOn71 AS ?thisPositionOn72) . BIND(?this AS ?pfs1t245) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00005a67')) AS ?annotation67) . BIND(?this AS ?pfs66) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch250 faldo:location ?templateMotifSequenceMatchRegionP59846251 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP59846253 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP59846MF_00005246 . ?templateMotifSequenceMatchRegionP59846251 faldo:begin ?templateMotifSequenceMatchBeginP59846252 . ?templateMotifSequenceMatchBeginP59846252 faldo:position ?templateMotifSequenceMatchBeginPositionP59846247 ; faldo:reference isoform:P59846-1 . ?templateMotifSequenceProfileAlignmentOperationP59846253 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . ?targetMotifMatch254 faldo:location ?targetMotifMatchRegionMatch255 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00005257 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP59846MF_00005248 . ?targetMotifMatchRegionMatch255 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00005256 . ?targetMotifMatchRegionMatchBeginMF_00005256 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00005249 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00005257 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59846MF_00005246, 1, (STRLEN(?templateMotifCigarP59846MF_00005246) - STRLEN(REPLACE(?templateMotifCigarP59846MF_00005246, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP59846247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1258) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59846MF_00005248, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005248) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59846MF_00005248, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005248) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), '')))), '[^-]', ''))) AS ?step2259) . BIND(((?step2259 + ?targetMotifMatchRegionMatchBeginPositionMF_00005249) - 1) AS ?thisPositionOn78) . BIND(?thisPositionOn78 AS ?thisPositionOn79) . BIND(?this AS ?pfs1t260) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb75) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse76) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00005a74')) AS ?annotation74) . BIND(?this AS ?pfs73) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch265 faldo:location ?templateMotifSequenceMatchRegionP59846266 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP59846268 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP59846MF_00005261 . ?templateMotifSequenceMatchRegionP59846266 faldo:begin ?templateMotifSequenceMatchBeginP59846267 . ?templateMotifSequenceMatchBeginP59846267 faldo:position ?templateMotifSequenceMatchBeginPositionP59846262 ; faldo:reference isoform:P59846-1 . ?templateMotifSequenceProfileAlignmentOperationP59846268 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . ?targetMotifMatch269 faldo:location ?targetMotifMatchRegionMatch270 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00005272 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP59846MF_00005263 . ?targetMotifMatchRegionMatch270 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00005271 . ?targetMotifMatchRegionMatchBeginMF_00005271 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00005264 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00005272 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59846MF_00005261, 1, (STRLEN(?templateMotifCigarP59846MF_00005261) - STRLEN(REPLACE(?templateMotifCigarP59846MF_00005261, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionP59846262) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1273) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59846MF_00005263, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005263) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59846MF_00005263, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005263) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), '')))), '[^-]', ''))) AS ?step2274) . BIND(((?step2274 + ?targetMotifMatchRegionMatchBeginPositionMF_00005264) - 1) AS ?thisPositionOn85) . BIND(?thisPositionOn85 AS ?thisPositionOn86) . BIND(?this AS ?pfs1t275) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb82) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse83) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_00005a81')) AS ?annotation81) . BIND(?this AS ?pfs80) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch280 faldo:location ?templateMotifSequenceMatchRegionP59846281 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP59846283 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP59846MF_00005276 . ?templateMotifSequenceMatchRegionP59846281 faldo:begin ?templateMotifSequenceMatchBeginP59846282 . ?templateMotifSequenceMatchBeginP59846282 faldo:position ?templateMotifSequenceMatchBeginPositionP59846277 ; faldo:reference isoform:P59846-1 . ?templateMotifSequenceProfileAlignmentOperationP59846283 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . ?targetMotifMatch284 faldo:location ?targetMotifMatchRegionMatch285 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00005287 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP59846MF_00005278 . ?targetMotifMatchRegionMatch285 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00005286 . ?targetMotifMatchRegionMatchBeginMF_00005286 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00005279 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00005287 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59846MF_00005276, 1, (STRLEN(?templateMotifCigarP59846MF_00005276) - STRLEN(REPLACE(?templateMotifCigarP59846MF_00005276, CONCAT('^(?:-*[^-]){', STR(((182 - ?templateMotifSequenceMatchBeginPositionP59846277) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1288) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59846MF_00005278, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005278) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005278, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1288), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59846MF_00005278, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005278) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005278, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1288), '}'), '')))), '[^-]', ''))) AS ?step2289) . BIND(((?step2289 + ?targetMotifMatchRegionMatchBeginPositionMF_00005279) - 1) AS ?thisPositionOn92) . BIND(?thisPositionOn92 AS ?thisPositionOn93) . BIND(?this AS ?pfs1t290) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb89) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse90) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_00005a88')) AS ?annotation88) . BIND(?this AS ?pfs87) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch295 faldo:location ?templateMotifSequenceMatchRegionP59846296 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP59846298 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP59846MF_00005291 . ?templateMotifSequenceMatchRegionP59846296 faldo:begin ?templateMotifSequenceMatchBeginP59846297 . ?templateMotifSequenceMatchBeginP59846297 faldo:position ?templateMotifSequenceMatchBeginPositionP59846292 ; faldo:reference isoform:P59846-1 . ?templateMotifSequenceProfileAlignmentOperationP59846298 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . ?targetMotifMatch299 faldo:location ?targetMotifMatchRegionMatch300 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00005302 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP59846MF_00005293 . ?targetMotifMatchRegionMatch300 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00005301 . ?targetMotifMatchRegionMatchBeginMF_00005301 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00005294 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00005302 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59846MF_00005291, 1, (STRLEN(?templateMotifCigarP59846MF_00005291) - STRLEN(REPLACE(?templateMotifCigarP59846MF_00005291, CONCAT('^(?:-*[^-]){', STR(((258 - ?templateMotifSequenceMatchBeginPositionP59846292) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1303) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59846MF_00005293, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005293) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1303), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59846MF_00005293, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005293) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1303), '}'), '')))), '[^-]', ''))) AS ?step2304) . BIND(((?step2304 + ?targetMotifMatchRegionMatchBeginPositionMF_00005294) - 1) AS ?thisPositionOn99) . BIND(?thisPositionOn99 AS ?thisPositionOn100) . BIND(?this AS ?pfs1t305) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb96) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse97) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00005a95')) AS ?annotation95) . BIND(?this AS ?pfs94) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch310 faldo:location ?templateMotifSequenceMatchRegionP59846311 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP59846313 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP59846MF_00005306 . ?templateMotifSequenceMatchRegionP59846311 faldo:begin ?templateMotifSequenceMatchBeginP59846312 . ?templateMotifSequenceMatchBeginP59846312 faldo:position ?templateMotifSequenceMatchBeginPositionP59846307 ; faldo:reference isoform:P59846-1 . ?templateMotifSequenceProfileAlignmentOperationP59846313 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . ?targetMotifMatch314 faldo:location ?targetMotifMatchRegionMatch315 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00005317 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP59846MF_00005308 . ?targetMotifMatchRegionMatch315 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00005316 . ?targetMotifMatchRegionMatchBeginMF_00005316 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00005309 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00005317 edam:has_input signature:MF_00005 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP59846MF_00005306, 1, (STRLEN(?templateMotifCigarP59846MF_00005306) - STRLEN(REPLACE(?templateMotifCigarP59846MF_00005306, CONCAT('^(?:-*[^-]){', STR(((270 - ?templateMotifSequenceMatchBeginPositionP59846307) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1318) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP59846MF_00005308, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005308) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1318), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP59846MF_00005308, 1, (STRLEN(?targetMotifMatchCigarP59846MF_00005308) - STRLEN(REPLACE(?targetMotifMatchCigarP59846MF_00005308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1318), '}'), '')))), '[^-]', ''))) AS ?step2319) . BIND(((?step2319 + ?targetMotifMatchRegionMatchBeginPositionMF_00005309) - 1) AS ?thisPositionOn106) . BIND(?thisPositionOn106 AS ?thisPositionOn107) . BIND(?this AS ?pfs1t320) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfsb103) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfse104) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn106, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_00005a102')) AS ?annotation102) . BIND(?this AS ?pfs101) . } }