CONSTRUCT { _:26074 up:source unirule:MF_00067 . _:26075 up:source unirule:MF_00067 . _:26076 up:source unirule:MF_00067 . _:26077 up:source unirule:MF_00067 . _:26078 up:source unirule:MF_00067 . _:26079 up:source unirule:MF_00067 . _:26080 up:source unirule:MF_00067 . _:26081 up:source unirule:MF_00067 . _:26082 up:source unirule:MF_00067 . _:26083 up:source unirule:MF_00067 . _:26084 up:source unirule:MF_00067 . _:26085 up:source unirule:MF_00067 . _:26086 up:source unirule:MF_00067 . _:26087 up:source unirule:MF_00067 . _:26088 up:source unirule:MF_00067 . _:26089 up:source unirule:MF_00067 . _:26090 up:source unirule:MF_00067 . _:26091 up:source unirule:MF_00067 . _:26092 up:source unirule:MF_00067 . _:26093 up:source unirule:MF_00067 . _:26094 up:source unirule:MF_00067 . _:26095 up:source unirule:MF_00067 . _:26096 up:source unirule:MF_00067 . _:26097 up:source unirule:MF_00067 . _:26098 up:source unirule:MF_00067 . _:26099 up:source unirule:MF_00067 . _:26100 up:source unirule:MF_00067 . _:26101 up:source unirule:MF_00067 . _:26102 up:source unirule:MF_00067 . _:26103 up:source unirule:MF_00067 . _:26104 up:source unirule:MF_00067 . ?this up:annotation ?annotation1 , ?annotation2 , ?annotation4 , ?annotation5 , ?annotation6 , ?annotation8 , ?annotation9 ; up:classifiedWith GO:0005737 , GO:0005975 , GO:0008270 , GO:0008968 , keyword:119 , keyword:413 , keyword:479 , keyword:862 , keyword:963 . ?gene0 skos:prefLabel 'gmhA' . ?annotation1 a up:Function_Annotation ; rdfs:comment 'Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.' . ?annotation2 up:activity ?activity3 ; rdf:type up:Catalytic_Activity_Annotation . ?activity3 up:catalyticActivity <http://rdf.rhea-db.org/27489>; up:enzymeClass <http://purl.uniprot.org/enzyme/5.3.1.28>. ?annotation4 up:cofactor chebi:29105 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 zinc ion per subunit.' . ?annotation5 a up:Pathway_Annotation ; rdfs:comment 'Carbohydrate biosynthesis; D-glycero-D-manno-heptose 7-phosphate biosynthesis; D-glycero-alpha-D-manno-heptose 7-phosphate and D-glycero-beta-D-manno-heptose 7-phosphate from sedoheptulose 7-phosphate: step 1/1.' . ?annotation6 a up:Subcellular_Location_Annotation . ?annotation6li7 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation8 a up:Annotation ; rdfs:comment 'The reaction produces a racemic mixture of D-glycero-alpha-D-manno-heptose 7-phosphate and D-glycero-beta-D-manno-heptose 7-phosphate.' . ?annotation9 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the SIS family. GmhA subfamily.' . ?case10 up:alternativeName ?name12 ; up:recommendedName ?name11 . ?name11 up:ecName '5.3.1.28' ; up:fullName 'Probable phosphoheptose isomerase' ; rdf:type up:Structured_Name . ?name12 up:fullName 'Sedoheptulose 7-phosphate isomerase' ; rdf:type up:Structured_Name . ?case13 up:alternativeName ?name15 ; up:recommendedName ?name14 . ?name14 up:ecName '5.3.1.28' ; up:fullName 'Phosphoheptose isomerase' ; rdf:type up:Structured_Name . ?name15 up:fullName 'Sedoheptulose 7-phosphate isomerase' ; rdf:type up:Structured_Name . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; up:ligand ?ligand21 ; rdf:type up:Binding_Site_Annotation . ?pfsb19 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?ligand21 rdfs:subClassOf ?molecule22 . ?molecule22 rdfs:label 'substrate' . ?pfs25 up:annotation ?annotation26 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; up:ligand ?ligand29 ; rdf:type up:Binding_Site_Annotation . ?pfsb27 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand29 rdfs:subClassOf ?molecule30 . ?molecule30 rdfs:label 'substrate' . ?pfs33 up:annotation ?annotation34 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; up:ligand ?ligand37 ; rdf:type up:Binding_Site_Annotation . ?pfsb35 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?ligand37 rdfs:subClassOf ?molecule38 . ?molecule38 rdfs:label 'substrate' . ?pfs41 up:annotation ?annotation42 . ?annotation42 faldo:begin ?pfsb43 ; faldo:end ?pfse44 ; up:ligand ?ligand45 ; rdf:type up:Binding_Site_Annotation . ?pfsb43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfse44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?ligand45 rdfs:subClassOf chebi:29105 . ?pfs48 up:annotation ?annotation49 . ?annotation49 faldo:begin ?pfsb50 ; faldo:end ?pfse51 ; up:ligand ?ligand52 ; rdf:type up:Binding_Site_Annotation . ?pfsb50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfse51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?ligand52 rdfs:subClassOf chebi:29105 . ?pfs55 up:annotation ?annotation56 . ?annotation56 faldo:begin ?pfsb57 ; faldo:end ?pfse58 ; up:ligand ?ligand59 ; rdf:type up:Binding_Site_Annotation . ?pfsb57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse58 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?ligand59 rdfs:subClassOf chebi:29105 . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; up:ligand ?ligand66 ; rdf:type up:Binding_Site_Annotation . ?pfsb64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?ligand66 rdfs:subClassOf chebi:29105 . ?pfs69 up:annotation ?annotation70 . ?annotation70 faldo:begin ?pfsb71 ; faldo:end ?pfse72 ; up:ligand ?ligand73 ; rdf:type up:Binding_Site_Annotation . ?pfsb71 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?pfse72 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?ligand73 rdfs:subClassOf ?molecule74 . ?molecule74 rdfs:label 'substrate' . ?pfs77 up:annotation ?annotation78 . ?annotation78 faldo:begin ?pfsb79 ; faldo:end ?pfse80 ; up:ligand ?ligand81 ; rdf:type up:Binding_Site_Annotation . ?pfsb79 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?pfse80 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?ligand81 rdfs:subClassOf ?molecule82 . ?molecule82 rdfs:label 'substrate' . ?pfs85 up:annotation ?annotation86 . ?annotation86 faldo:begin ?pfsb87 ; faldo:end ?pfse88 ; up:ligand ?ligand89 ; rdf:type up:Binding_Site_Annotation . ?pfsb87 faldo:position ?thisPositionOn91 ; rdf:type faldo:ExactPosition . ?pfse88 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?ligand89 rdfs:subClassOf ?molecule90 . ?molecule90 rdfs:label 'substrate' . _:26105 a rdf:Statement ; up:attribution _:26074 ; rdf:subject ?gene0 ; rdf:predicate up:encodedBy ; rdf:object ?gene0 . _:26106 a rdf:Statement ; up:attribution _:26075 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:26107 a rdf:Statement ; up:attribution _:26076 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:26108 a rdf:Statement ; up:attribution _:26077 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:26109 a rdf:Statement ; up:attribution _:26078 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:26110 a rdf:Statement ; up:attribution _:26079 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:26111 a rdf:Statement ; up:attribution _:26080 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:26112 a rdf:Statement ; up:attribution _:26081 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:26113 a rdf:Statement ; up:attribution _:26082 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:26114 a rdf:Statement ; up:attribution _:26083 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:119 . _:26115 a rdf:Statement ; up:attribution _:26084 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:413 . _:26116 a rdf:Statement ; up:attribution _:26085 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:26117 a rdf:Statement ; up:attribution _:26086 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:26118 a rdf:Statement ; up:attribution _:26087 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:26119 a rdf:Statement ; up:attribution _:26088 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008968 . _:26120 a rdf:Statement ; up:attribution _:26089 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005975 . _:26121 a rdf:Statement ; up:attribution _:26090 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:26122 a rdf:Statement ; up:attribution _:26091 ; rdf:subject ?case10 ; rdf:predicate up:recommendedName ; rdf:object ?name11 . _:26123 a rdf:Statement ; up:attribution _:26092 ; rdf:subject ?case10 ; rdf:predicate up:alternativeName ; rdf:object ?name12 . _:26124 a rdf:Statement ; up:attribution _:26093 ; rdf:subject ?case13 ; rdf:predicate up:recommendedName ; rdf:object ?name14 . _:26125 a rdf:Statement ; up:attribution _:26094 ; rdf:subject ?case13 ; rdf:predicate up:alternativeName ; rdf:object ?name15 . _:26126 a rdf:Statement ; up:source unirule:MF_00067 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:26127 a rdf:Statement ; up:attribution _:26095 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:26128 a rdf:Statement ; up:source unirule:MF_00067 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:26129 a rdf:Statement ; up:attribution _:26096 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:26130 a rdf:Statement ; up:source unirule:MF_00067 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:26131 a rdf:Statement ; up:attribution _:26097 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:26132 a rdf:Statement ; up:source unirule:MF_00067 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:26133 a rdf:Statement ; up:attribution _:26098 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:26134 a rdf:Statement ; up:source unirule:MF_00067 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:26135 a rdf:Statement ; up:attribution _:26099 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:26136 a rdf:Statement ; up:source unirule:MF_00067 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:26137 a rdf:Statement ; up:attribution _:26100 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:26138 a rdf:Statement ; up:source unirule:MF_00067 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:26139 a rdf:Statement ; up:attribution _:26101 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:26140 a rdf:Statement ; up:source unirule:MF_00067 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . _:26141 a rdf:Statement ; up:attribution _:26102 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . _:26142 a rdf:Statement ; up:source unirule:MF_00067 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:26143 a rdf:Statement ; up:attribution _:26103 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:26144 a rdf:Statement ; up:source unirule:MF_00067 ; rdf:subject ?pfs85 ; rdf:predicate up:annotation ; rdf:object ?annotation86 . _:26145 a rdf:Statement ; up:attribution _:26104 ; rdf:subject ?pfs85 ; rdf:predicate up:annotation ; rdf:object ?annotation86 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00067 #Rule MF_00067 Created by:hamap on:2001-06-01 Modified by:ecastro on:2023-06-01 VALUES ?supertaxon93 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00067 . ?thisOrganism rdfs:subClassOf+ ?supertaxon93 . BIND(URI(CONCAT(STR(?this), '#MF_00067a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_00067a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00067a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00067a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00067a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00067a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_00067a9')) AS ?annotation9) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionQ93UJ299 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2101 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ93UJ2MF_0006794 . ?templateMotifSequenceMatchRegionQ93UJ299 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2100 . ?templateMotifSequenceMatchBeginQ93UJ2100 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ295 ; faldo:reference isoform:Q93UJ2-1 . ?templateMotifSequenceProfileAlignmentOperationQ93UJ2101 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . ?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067105 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ93UJ2MF_0006796 . ?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067104 . ?targetMotifMatchRegionMatchBeginMF_00067104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0006797 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00067105 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_0006794, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_0006794) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_0006794, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionQ93UJ295) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_0006796, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_0006796) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_0006796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_0006796, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_0006796) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_0006796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) . BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0006797) - 1) AS ?thisPositionOn23) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_0006794, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_0006794) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_0006794, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionQ93UJ295) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_0006796, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_0006796) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_0006796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_0006796, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_0006796) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_0006796, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) . BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0006797) - 1) AS ?thisPositionOn24) . BIND(?this AS ?pfs1t110) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse20) . FILTER (REGEX('N[ARNDCQEGHILKMFPSTWYVBZJUOX]G', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) . BIND(URI(CONCAT(STR(?this), '#MF_00067a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2116 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2118 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ93UJ2MF_00067111 . ?templateMotifSequenceMatchRegionQ93UJ2116 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2117 . ?templateMotifSequenceMatchBeginQ93UJ2117 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2112 ; faldo:reference isoform:Q93UJ2-1 . ?templateMotifSequenceProfileAlignmentOperationQ93UJ2118 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . ?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067122 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067113 . ?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067121 . ?targetMotifMatchRegionMatchBeginMF_00067121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067114 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00067122 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067111, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067111) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067111, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionQ93UJ2112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067113, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067113) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067113, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067113) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) . BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00067114) - 1) AS ?thisPositionOn31) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067111, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067111) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067111, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionQ93UJ2112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067113, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067113) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067113, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067113) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) . BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_00067114) - 1) AS ?thisPositionOn32) . BIND(?this AS ?pfs1t127) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse28) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, (?thisPositionOn32 - ?thisPositionOn31)) = 'ND')) . BIND(URI(CONCAT(STR(?this), '#MF_00067a26')) AS ?annotation26) . BIND(?this AS ?pfs25) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2133 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2135 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ93UJ2MF_00067128 . ?templateMotifSequenceMatchRegionQ93UJ2133 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2134 . ?templateMotifSequenceMatchBeginQ93UJ2134 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2129 ; faldo:reference isoform:Q93UJ2-1 . ?templateMotifSequenceProfileAlignmentOperationQ93UJ2135 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . ?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067139 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067130 . ?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067138 . ?targetMotifMatchRegionMatchBeginMF_00067138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067131 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00067139 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067128, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067128) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067128, CONCAT('^(?:-*[^-]){', STR(((123 - ?templateMotifSequenceMatchBeginPositionQ93UJ2129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067130, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067130) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067130, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067130) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) . BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_00067131) - 1) AS ?thisPositionOn39) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067128, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067128) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067128, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionQ93UJ2129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067130, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067130) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067130, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067130) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) . BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_00067131) - 1) AS ?thisPositionOn40) . BIND(?this AS ?pfs1t144) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse36) . FILTER (REGEX('[ST]TS', SUBSTR(?thisSequenceValue, ?thisPositionOn39, (?thisPositionOn40 - ?thisPositionOn39)))) . BIND(URI(CONCAT(STR(?this), '#MF_00067a34')) AS ?annotation34) . BIND(?this AS ?pfs33) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2150 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2152 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ93UJ2MF_00067145 . ?templateMotifSequenceMatchRegionQ93UJ2150 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2151 . ?templateMotifSequenceMatchBeginQ93UJ2151 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2146 ; faldo:reference isoform:Q93UJ2-1 . ?templateMotifSequenceProfileAlignmentOperationQ93UJ2152 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . ?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067156 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067147 . ?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067155 . ?targetMotifMatchRegionMatchBeginMF_00067155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067148 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00067156 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067145, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067145) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067145, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionQ93UJ2146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067147, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067147) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067147, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067147) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) . BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_00067148) - 1) AS ?thisPositionOn46) . BIND(?thisPositionOn46 AS ?thisPositionOn47) . BIND(?this AS ?pfs1t159) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00067a42')) AS ?annotation42) . BIND(?this AS ?pfs41) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2165 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2167 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ93UJ2MF_00067160 . ?templateMotifSequenceMatchRegionQ93UJ2165 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2166 . ?templateMotifSequenceMatchBeginQ93UJ2166 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2161 ; faldo:reference isoform:Q93UJ2-1 . ?templateMotifSequenceProfileAlignmentOperationQ93UJ2167 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . ?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067171 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067162 . ?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067170 . ?targetMotifMatchRegionMatchBeginMF_00067170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067163 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00067171 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067160, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067160) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067160, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionQ93UJ2161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067162, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067162) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067162, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067162) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) . BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_00067163) - 1) AS ?thisPositionOn53) . BIND(?thisPositionOn53 AS ?thisPositionOn54) . BIND(?this AS ?pfs1t174) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) . FILTER (REGEX('[EQN]', SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00067a49')) AS ?annotation49) . BIND(?this AS ?pfs48) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2180 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2182 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ93UJ2MF_00067175 . ?templateMotifSequenceMatchRegionQ93UJ2180 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2181 . ?templateMotifSequenceMatchBeginQ93UJ2181 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2176 ; faldo:reference isoform:Q93UJ2-1 . ?templateMotifSequenceProfileAlignmentOperationQ93UJ2182 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . ?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067186 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067177 . ?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067185 . ?targetMotifMatchRegionMatchBeginMF_00067185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067178 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00067186 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067175, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067175) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067175, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionQ93UJ2176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067177, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067177) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067177, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067177) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) . BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_00067178) - 1) AS ?thisPositionOn60) . BIND(?thisPositionOn60 AS ?thisPositionOn61) . BIND(?this AS ?pfs1t189) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) . FILTER (REGEX('[QH]', SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00067a56')) AS ?annotation56) . BIND(?this AS ?pfs55) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2195 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2197 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ93UJ2MF_00067190 . ?templateMotifSequenceMatchRegionQ93UJ2195 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2196 . ?templateMotifSequenceMatchBeginQ93UJ2196 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2191 ; faldo:reference isoform:Q93UJ2-1 . ?templateMotifSequenceProfileAlignmentOperationQ93UJ2197 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . ?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067201 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067192 . ?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067200 . ?targetMotifMatchRegionMatchBeginMF_00067200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067193 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00067201 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067190, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067190) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067190, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionQ93UJ2191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067192, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067192) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067192, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067192) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) . BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_00067193) - 1) AS ?thisPositionOn67) . BIND(?thisPositionOn67 AS ?thisPositionOn68) . BIND(?this AS ?pfs1t204) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00067a63')) AS ?annotation63) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2210 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2212 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ93UJ2MF_00067205 . ?templateMotifSequenceMatchRegionQ93UJ2210 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2211 . ?templateMotifSequenceMatchBeginQ93UJ2211 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2206 ; faldo:reference isoform:Q93UJ2-1 . ?templateMotifSequenceProfileAlignmentOperationQ93UJ2212 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . ?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067216 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067207 . ?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067215 . ?targetMotifMatchRegionMatchBeginMF_00067215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067208 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00067216 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067205, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067205) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067205, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionQ93UJ2206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067207, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067207) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067207, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067207) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) . BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_00067208) - 1) AS ?thisPositionOn75) . BIND(?thisPositionOn75 AS ?thisPositionOn76) . BIND(?this AS ?pfs1t219) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb71) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse72) . FILTER (REGEX('[EQN]', SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00067a70')) AS ?annotation70) . BIND(?this AS ?pfs69) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2225 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2227 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ93UJ2MF_00067220 . ?templateMotifSequenceMatchRegionQ93UJ2225 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2226 . ?templateMotifSequenceMatchBeginQ93UJ2226 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2221 ; faldo:reference isoform:Q93UJ2-1 . ?templateMotifSequenceProfileAlignmentOperationQ93UJ2227 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . ?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067231 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067222 . ?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067230 . ?targetMotifMatchRegionMatchBeginMF_00067230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067223 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00067231 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067220, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067220) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067220, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionQ93UJ2221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067222, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067222) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067222, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067222) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) . BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_00067223) - 1) AS ?thisPositionOn83) . BIND(?thisPositionOn83 AS ?thisPositionOn84) . BIND(?this AS ?pfs1t234) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse80) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_00067a78')) AS ?annotation78) . BIND(?this AS ?pfs77) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionQ93UJ2240 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ93UJ2242 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ93UJ2MF_00067235 . ?templateMotifSequenceMatchRegionQ93UJ2240 faldo:begin ?templateMotifSequenceMatchBeginQ93UJ2241 . ?templateMotifSequenceMatchBeginQ93UJ2241 faldo:position ?templateMotifSequenceMatchBeginPositionQ93UJ2236 ; faldo:reference isoform:Q93UJ2-1 . ?templateMotifSequenceProfileAlignmentOperationQ93UJ2242 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . ?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00067246 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ93UJ2MF_00067237 . ?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00067245 . ?targetMotifMatchRegionMatchBeginMF_00067245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00067238 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00067246 edam:has_input signature:MF_00067 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ93UJ2MF_00067235, 1, (STRLEN(?templateMotifCigarQ93UJ2MF_00067235) - STRLEN(REPLACE(?templateMotifCigarQ93UJ2MF_00067235, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionQ93UJ2236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067237, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067237) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ93UJ2MF_00067237, 1, (STRLEN(?targetMotifMatchCigarQ93UJ2MF_00067237) - STRLEN(REPLACE(?targetMotifMatchCigarQ93UJ2MF_00067237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) . BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_00067238) - 1) AS ?thisPositionOn91) . BIND(?thisPositionOn91 AS ?thisPositionOn92) . BIND(?this AS ?pfs1t249) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb87) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse88) . FILTER (REGEX('[QH]', SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00067a86')) AS ?annotation86) . BIND(?this AS ?pfs85) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(?this AS ?case10) . BIND(URI(CONCAT(STR(?this), '#MF_00067a11')) AS ?name11) . BIND(URI(CONCAT(STR(?this), '#MF_00067a12')) AS ?name12) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?case13) . BIND(URI(CONCAT(STR(?this), '#MF_00067a14')) AS ?name14) . BIND(URI(CONCAT(STR(?this), '#MF_00067a15')) AS ?name15) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1224 . BIND(?this AS ?case16) . } }