CONSTRUCT { _:46988 up:source unirule:MF_00119 . _:46989 up:source unirule:MF_00119 . _:46990 up:source unirule:MF_00119 . _:46991 up:source unirule:MF_00119 . _:46992 up:source unirule:MF_00119 . _:46993 up:source unirule:MF_00119 . _:46994 up:source unirule:MF_00119 . _:46995 up:source unirule:MF_00119 . _:46996 up:source unirule:MF_00119 . _:46997 up:source unirule:MF_00119 . _:46998 up:source unirule:MF_00119 . _:46999 up:source unirule:MF_00119 . _:47000 up:source unirule:MF_00119 . _:47001 up:source unirule:MF_00119 . _:47002 up:source unirule:MF_00119 . _:47003 up:source unirule:MF_00119 . _:47004 up:source unirule:MF_00119 . _:47005 up:source unirule:MF_00119 . _:47006 up:source unirule:MF_00119 . _:47007 up:source unirule:MF_00119 . _:47008 up:source unirule:MF_00119 . _:47009 up:source unirule:MF_00119 . _:47010 up:source unirule:MF_00119 . _:47011 up:source unirule:MF_00119 . _:47012 up:source unirule:MF_00119 . _:47013 up:source unirule:MF_00119 . _:47014 up:source unirule:MF_00119 . _:47015 up:source unirule:MF_00119 . _:47016 up:source unirule:MF_00119 . _:47017 up:source unirule:MF_00119 . ?this up:alternativeName ?name1 , ?name2 ; up:annotation ?annotation4 , ?annotation5 , ?annotation7 , ?annotation8 , ?annotation9 ; up:classifiedWith GO:0003746 , GO:0005525 , keyword:342 , keyword:378 , keyword:396 , keyword:460 , keyword:479 , keyword:547 , keyword:648 ; up:recommendedName ?name0 . ?name0 up:ecName '3.6.5.3' ; up:fullName 'Translation initiation factor 2 subunit gamma' ; rdf:type up:Structured_Name . ?name1 up:fullName 'aIF2-gamma' ; rdf:type up:Structured_Name . ?name2 up:fullName 'eIF-2-gamma' ; rdf:type up:Structured_Name . ?gene3 skos:prefLabel 'eif2g' . ?annotation4 a up:Function_Annotation ; rdfs:comment 'eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.' . ?annotation5 up:activity ?activity6 ; rdf:type up:Catalytic_Activity_Annotation . ?activity6 up:catalyticActivity <http://rdf.rhea-db.org/19669>; up:enzymeClass <http://purl.uniprot.org/enzyme/3.6.5.3>. ?annotation7 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation . ?annotation8 a up:Subunit_Annotation ; rdfs:comment 'Heterotrimer composed of an alpha, a beta and a gamma chain.' . ?annotation9 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EIF2G subfamily.' . ?case10 up:classifiedWith keyword:862 . ?pfs11 up:annotation ?annotation12 , ?annotation18 , ?annotation24 , ?annotation30 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; up:ligand ?ligand15 ; rdf:type up:Binding_Site_Annotation . ?pfsb13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?ligand15 rdfs:subClassOf chebi:29105 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; up:ligand ?ligand21 ; rdf:type up:Binding_Site_Annotation . ?pfsb19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?ligand21 rdfs:subClassOf chebi:29105 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation . ?pfsb25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf chebi:29105 . ?annotation30 faldo:begin ?pfsb31 ; faldo:end ?pfse32 ; up:ligand ?ligand33 ; rdf:type up:Binding_Site_Annotation . ?pfsb31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?ligand33 rdfs:subClassOf chebi:29105 . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; up:ligand ?ligand40 ; rdf:type up:Binding_Site_Annotation . ?pfsb38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?ligand40 rdfs:subClassOf chebi:37565 . ?pfs43 up:annotation ?annotation44 . ?annotation44 faldo:begin ?pfsb45 ; faldo:end ?pfse46 ; up:ligand ?ligand47 ; rdf:type up:Binding_Site_Annotation . ?pfsb45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?ligand47 rdfs:subClassOf chebi:37565 . ?pfs50 up:annotation ?annotation51 . ?annotation51 faldo:begin ?pfsb52 ; faldo:end ?pfse53 ; up:ligand ?ligand54 ; rdf:type up:Binding_Site_Annotation . ?pfsb52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?pfse53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?ligand54 rdfs:subClassOf chebi:37565 . ?pfs57 up:annotation ?annotation58 . ?annotation58 faldo:begin ?pfsb59 ; faldo:end ?pfse60 ; up:ligand ?ligand61 ; rdf:type up:Binding_Site_Annotation . ?pfsb59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?pfse60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?ligand61 rdfs:subClassOf chebi:18420 . ?pfs64 up:annotation ?annotation65 . ?annotation65 faldo:begin ?pfsb66 ; faldo:end ?pfse67 ; up:ligand ?ligand68 ; rdf:type up:Binding_Site_Annotation . ?pfsb66 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?pfse67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?ligand68 rdfs:subClassOf chebi:18420 . ?pfs71 up:annotation ?annotation72 . ?annotation72 faldo:begin ?pfsb73 ; faldo:end ?pfse74 ; up:ligand ?ligand75 ; rdf:type up:Binding_Site_Annotation . ?pfsb73 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?pfse74 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?ligand75 rdfs:subClassOf chebi:18420 . ?pfs78 up:annotation ?annotation79 . ?annotation79 faldo:begin ?pfsb80 ; faldo:end ?pfse81 ; up:ligand ?ligand82 ; rdf:type up:Binding_Site_Annotation . ?pfsb80 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?pfse81 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?ligand82 rdfs:subClassOf chebi:18420 . _:47018 a rdf:Statement ; up:attribution _:46988 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:47019 a rdf:Statement ; up:attribution _:46989 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:47020 a rdf:Statement ; up:attribution _:46990 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:47021 a rdf:Statement ; up:attribution _:46991 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:47022 a rdf:Statement ; up:attribution _:46992 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:47023 a rdf:Statement ; up:attribution _:46993 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:47024 a rdf:Statement ; up:attribution _:46994 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:47025 a rdf:Statement ; up:attribution _:46995 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:47026 a rdf:Statement ; up:attribution _:46996 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:47027 a rdf:Statement ; up:attribution _:46997 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:396 . _:47028 a rdf:Statement ; up:attribution _:46998 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:648 . _:47029 a rdf:Statement ; up:attribution _:46999 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:342 . _:47030 a rdf:Statement ; up:attribution _:47000 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:47031 a rdf:Statement ; up:attribution _:47001 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:47032 a rdf:Statement ; up:attribution _:47002 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:47033 a rdf:Statement ; up:attribution _:47003 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:47034 a rdf:Statement ; up:attribution _:47004 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005525 . _:47035 a rdf:Statement ; up:attribution _:47005 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003746 . _:47036 a rdf:Statement ; up:attribution _:47006 ; rdf:subject ?case10 ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:47037 a rdf:Statement ; up:source unirule:MF_00119 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:47038 a rdf:Statement ; up:attribution _:47007 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:47039 a rdf:Statement ; up:source unirule:MF_00119 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:47040 a rdf:Statement ; up:attribution _:47008 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:47041 a rdf:Statement ; up:source unirule:MF_00119 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:47042 a rdf:Statement ; up:attribution _:47009 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:47043 a rdf:Statement ; up:source unirule:MF_00119 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:47044 a rdf:Statement ; up:attribution _:47010 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:47045 a rdf:Statement ; up:source unirule:MF_00119 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:47046 a rdf:Statement ; up:attribution _:47011 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:47047 a rdf:Statement ; up:source unirule:MF_00119 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:47048 a rdf:Statement ; up:attribution _:47012 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:47049 a rdf:Statement ; up:source unirule:MF_00119 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:47050 a rdf:Statement ; up:attribution _:47013 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:47051 a rdf:Statement ; up:source unirule:MF_00119 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:47052 a rdf:Statement ; up:attribution _:47014 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:47053 a rdf:Statement ; up:source unirule:MF_00119 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:47054 a rdf:Statement ; up:attribution _:47015 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:47055 a rdf:Statement ; up:source unirule:MF_00119 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:47056 a rdf:Statement ; up:attribution _:47016 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:47057 a rdf:Statement ; up:source unirule:MF_00119 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:47058 a rdf:Statement ; up:attribution _:47017 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00119 #Rule MF_00119 Created by:hamap on:2001-06-01 Modified by:ecastro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00119 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(URI(CONCAT(STR(?this), '#MF_00119a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00119a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00119a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_00119a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00119a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00119a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00119a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_00119a9')) AS ?annotation9) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionQ980A590 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ980A592 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ980A5MF_0011985 . ?templateMotifSequenceMatchRegionQ980A590 faldo:begin ?templateMotifSequenceMatchBeginQ980A591 . ?templateMotifSequenceMatchBeginQ980A591 faldo:position ?templateMotifSequenceMatchBeginPositionQ980A586 ; faldo:reference isoform:Q980A5-1 . ?templateMotifSequenceProfileAlignmentOperationQ980A592 edam:has_input signature:MF_00119 ; rdf:type edam:operation_0300 . ?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0011996 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ980A5MF_0011987 . ?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0011995 . ?targetMotifMatchRegionMatchBeginMF_0011995 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0011988 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0011996 edam:has_input signature:MF_00119 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_0011985, 1, (STRLEN(?templateMotifCigarQ980A5MF_0011985) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_0011985, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionQ980A586) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_0011987, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_0011987) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_0011987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_0011987, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_0011987) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_0011987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) . BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0011988) - 1) AS ?thisPositionOn16) . BIND(?thisPositionOn16 AS ?thisPositionOn17) . BIND(?this AS ?pfs1t99) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_0011985, 1, (STRLEN(?templateMotifCigarQ980A5MF_0011985) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_0011985, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionQ980A586) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_0011987, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_0011987) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_0011987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_0011987, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_0011987) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_0011987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) . BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0011988) - 1) AS ?thisPositionOn22) . BIND(?thisPositionOn22 AS ?thisPositionOn23) . BIND(?this AS ?pfs1t102) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_0011985, 1, (STRLEN(?templateMotifCigarQ980A5MF_0011985) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_0011985, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionQ980A586) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_0011987, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_0011987) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_0011987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_0011987, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_0011987) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_0011987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) . BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0011988) - 1) AS ?thisPositionOn28) . BIND(?thisPositionOn28 AS ?thisPositionOn29) . BIND(?this AS ?pfs1t105) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_0011985, 1, (STRLEN(?templateMotifCigarQ980A5MF_0011985) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_0011985, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionQ980A586) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_0011987, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_0011987) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_0011987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_0011987, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_0011987) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_0011987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) . BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0011988) - 1) AS ?thisPositionOn34) . BIND(?thisPositionOn34 AS ?thisPositionOn35) . BIND(?this AS ?pfs1t108) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'C')) . BIND(?this AS ?pfs11) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionQ980A5114 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ980A5116 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ980A5MF_00119109 . ?templateMotifSequenceMatchRegionQ980A5114 faldo:begin ?templateMotifSequenceMatchBeginQ980A5115 . ?templateMotifSequenceMatchBeginQ980A5115 faldo:position ?templateMotifSequenceMatchBeginPositionQ980A5110 ; faldo:reference isoform:Q980A5-1 . ?templateMotifSequenceProfileAlignmentOperationQ980A5116 edam:has_input signature:MF_00119 ; rdf:type edam:operation_0300 . ?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00119120 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ980A5MF_00119111 . ?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00119119 . ?targetMotifMatchRegionMatchBeginMF_00119119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00119112 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00119120 edam:has_input signature:MF_00119 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119109, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119109) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119109, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionQ980A5110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119111, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119111) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119111, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119111) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) . BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_00119112) - 1) AS ?thisPositionOn41) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119109, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119109) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119109, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionQ980A5110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119111, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119111) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119111, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119111) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) . BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00119112) - 1) AS ?thisPositionOn42) . BIND(?this AS ?pfs2t125) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) . FILTER (REGEX('DHGK[ST][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn41, (?thisPositionOn42 - ?thisPositionOn41)))) . BIND(URI(CONCAT(STR(?this), '#MF_00119a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionQ980A5131 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ980A5133 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ980A5MF_00119126 . ?templateMotifSequenceMatchRegionQ980A5131 faldo:begin ?templateMotifSequenceMatchBeginQ980A5132 . ?templateMotifSequenceMatchBeginQ980A5132 faldo:position ?templateMotifSequenceMatchBeginPositionQ980A5127 ; faldo:reference isoform:Q980A5-1 . ?templateMotifSequenceProfileAlignmentOperationQ980A5133 edam:has_input signature:MF_00119 ; rdf:type edam:operation_0300 . ?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00119137 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ980A5MF_00119128 . ?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00119136 . ?targetMotifMatchRegionMatchBeginMF_00119136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00119129 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00119137 edam:has_input signature:MF_00119 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119126, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119126) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119126, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionQ980A5127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119128, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119128) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119128, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119128) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) . BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_00119129) - 1) AS ?thisPositionOn48) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119126, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119126) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119126, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionQ980A5127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119128, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119128) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119128, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119128) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) . BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_00119129) - 1) AS ?thisPositionOn49) . BIND(?this AS ?pfs2t142) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) . FILTER (REGEX('NK[VI][DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn48, (?thisPositionOn49 - ?thisPositionOn48)))) . BIND(URI(CONCAT(STR(?this), '#MF_00119a44')) AS ?annotation44) . BIND(?this AS ?pfs43) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionQ980A5148 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ980A5150 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ980A5MF_00119143 . ?templateMotifSequenceMatchRegionQ980A5148 faldo:begin ?templateMotifSequenceMatchBeginQ980A5149 . ?templateMotifSequenceMatchBeginQ980A5149 faldo:position ?templateMotifSequenceMatchBeginPositionQ980A5144 ; faldo:reference isoform:Q980A5-1 . ?templateMotifSequenceProfileAlignmentOperationQ980A5150 edam:has_input signature:MF_00119 ; rdf:type edam:operation_0300 . ?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00119154 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ980A5MF_00119145 . ?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00119153 . ?targetMotifMatchRegionMatchBeginMF_00119153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00119146 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00119154 edam:has_input signature:MF_00119 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119143, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119143) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119143, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionQ980A5144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119145, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119145) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119145, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119145) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) . BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_00119146) - 1) AS ?thisPositionOn55) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119143, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119143) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119143, CONCAT('^(?:-*[^-]){', STR(((186 - ?templateMotifSequenceMatchBeginPositionQ980A5144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119145, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119145) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119145, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119145) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) . BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_00119146) - 1) AS ?thisPositionOn56) . BIND(?this AS ?pfs2t159) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) . FILTER (REGEX('SA[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn55, (?thisPositionOn56 - ?thisPositionOn55)))) . BIND(URI(CONCAT(STR(?this), '#MF_00119a51')) AS ?annotation51) . BIND(?this AS ?pfs50) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionQ980A5165 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ980A5167 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ980A5MF_00119160 . ?templateMotifSequenceMatchRegionQ980A5165 faldo:begin ?templateMotifSequenceMatchBeginQ980A5166 . ?templateMotifSequenceMatchBeginQ980A5166 faldo:position ?templateMotifSequenceMatchBeginPositionQ980A5161 ; faldo:reference isoform:Q980A5-1 . ?templateMotifSequenceProfileAlignmentOperationQ980A5167 edam:has_input signature:MF_00119 ; rdf:type edam:operation_0300 . ?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00119171 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ980A5MF_00119162 . ?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00119170 . ?targetMotifMatchRegionMatchBeginMF_00119170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00119163 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00119171 edam:has_input signature:MF_00119 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119160, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119160) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119160, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionQ980A5161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119162, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119162) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119162, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119162) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) . BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_00119163) - 1) AS ?thisPositionOn62) . BIND(?thisPositionOn62 AS ?thisPositionOn63) . BIND(?this AS ?pfs2t174) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00119a58')) AS ?annotation58) . BIND(?this AS ?pfs57) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionQ980A5180 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ980A5182 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ980A5MF_00119175 . ?templateMotifSequenceMatchRegionQ980A5180 faldo:begin ?templateMotifSequenceMatchBeginQ980A5181 . ?templateMotifSequenceMatchBeginQ980A5181 faldo:position ?templateMotifSequenceMatchBeginPositionQ980A5176 ; faldo:reference isoform:Q980A5-1 . ?templateMotifSequenceProfileAlignmentOperationQ980A5182 edam:has_input signature:MF_00119 ; rdf:type edam:operation_0300 . ?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00119186 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ980A5MF_00119177 . ?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00119185 . ?targetMotifMatchRegionMatchBeginMF_00119185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00119178 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00119186 edam:has_input signature:MF_00119 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119175, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119175) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119175, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionQ980A5176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119177, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119177) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119177, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119177) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) . BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_00119178) - 1) AS ?thisPositionOn69) . BIND(?thisPositionOn69 AS ?thisPositionOn70) . BIND(?this AS ?pfs2t189) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00119a65')) AS ?annotation65) . BIND(?this AS ?pfs64) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionQ980A5195 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ980A5197 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ980A5MF_00119190 . ?templateMotifSequenceMatchRegionQ980A5195 faldo:begin ?templateMotifSequenceMatchBeginQ980A5196 . ?templateMotifSequenceMatchBeginQ980A5196 faldo:position ?templateMotifSequenceMatchBeginPositionQ980A5191 ; faldo:reference isoform:Q980A5-1 . ?templateMotifSequenceProfileAlignmentOperationQ980A5197 edam:has_input signature:MF_00119 ; rdf:type edam:operation_0300 . ?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00119201 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ980A5MF_00119192 . ?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00119200 . ?targetMotifMatchRegionMatchBeginMF_00119200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00119193 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00119201 edam:has_input signature:MF_00119 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119190, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119190) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119190, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionQ980A5191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119192, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119192) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119192, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119192) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) . BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_00119193) - 1) AS ?thisPositionOn76) . BIND(?thisPositionOn76 AS ?thisPositionOn77) . BIND(?this AS ?pfs2t204) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_00119a72')) AS ?annotation72) . BIND(?this AS ?pfs71) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionQ980A5210 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ980A5212 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ980A5MF_00119205 . ?templateMotifSequenceMatchRegionQ980A5210 faldo:begin ?templateMotifSequenceMatchBeginQ980A5211 . ?templateMotifSequenceMatchBeginQ980A5211 faldo:position ?templateMotifSequenceMatchBeginPositionQ980A5206 ; faldo:reference isoform:Q980A5-1 . ?templateMotifSequenceProfileAlignmentOperationQ980A5212 edam:has_input signature:MF_00119 ; rdf:type edam:operation_0300 . ?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00119216 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ980A5MF_00119207 . ?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00119215 . ?targetMotifMatchRegionMatchBeginMF_00119215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00119208 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00119216 edam:has_input signature:MF_00119 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119205, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119205) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119205, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionQ980A5206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119207, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119207) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119207, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119207) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) . BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_00119208) - 1) AS ?thisPositionOn83) . BIND(?thisPositionOn83 AS ?thisPositionOn84) . BIND(?this AS ?pfs2t219) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb80) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse81) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00119a79')) AS ?annotation79) . BIND(?this AS ?pfs78) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag220) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag220, ?UNBOUND_VARIABLE) AS ?case10) . }