CONSTRUCT { _:86713 up:source unirule:MF_00208 . _:86714 up:source unirule:MF_00208 . _:86715 up:source unirule:MF_00208 . _:86716 up:source unirule:MF_00208 . _:86717 up:source unirule:MF_00208 . _:86718 up:source unirule:MF_00208 . _:86719 up:source unirule:MF_00208 . _:86720 up:source unirule:MF_00208 . _:86721 up:source unirule:MF_00208 . _:86722 up:source unirule:MF_00208 . _:86723 up:source unirule:MF_00208 . _:86724 up:source unirule:MF_00208 . _:86725 up:source unirule:MF_00208 . _:86726 up:source unirule:MF_00208 . _:86727 up:source unirule:MF_00208 . _:86728 up:source unirule:MF_00208 . _:86729 up:source unirule:MF_00208 . _:86730 up:source unirule:MF_00208 . _:86731 up:source unirule:MF_00208 . _:86732 up:source unirule:MF_00208 . _:86733 up:source unirule:MF_00208 . _:86734 up:source unirule:MF_00208 . _:86735 up:source unirule:MF_00208 . _:86736 up:source unirule:MF_00208 . _:86737 up:source unirule:MF_00208 . _:86738 up:source unirule:MF_00208 . _:86739 up:source unirule:MF_00208 . _:86740 up:source unirule:MF_00208 . _:86741 up:source unirule:MF_00208 . _:86742 up:source unirule:MF_00208 . _:86743 up:source unirule:MF_00208 . _:86744 up:source unirule:MF_00208 . _:86745 up:source unirule:MF_00208 . _:86746 up:source unirule:MF_00208 . _:86747 up:source unirule:MF_00208 . _:86748 up:source unirule:MF_00208 . _:86749 up:source unirule:MF_00208 . _:86750 up:source unirule:MF_00208 . _:86751 up:source unirule:MF_00208 . _:86752 up:source unirule:MF_00208 . _:86753 up:source unirule:MF_00208 . _:86754 up:source unirule:MF_00208 . _:86755 up:source unirule:MF_00208 . _:86756 up:source unirule:MF_00208 . _:86757 up:source unirule:MF_00208 . _:86758 up:source unirule:MF_00208 . _:86759 up:source unirule:MF_00208 . _:86760 up:source unirule:MF_00208 . _:86761 up:source unirule:MF_00208 . _:86762 up:source unirule:MF_00208 . _:86763 up:source unirule:MF_00208 . _:86764 up:source unirule:MF_00208 . ?this up:annotation ?annotation1 , ?annotation2 , ?annotation3 , ?annotation5 , ?annotation6 ; up:classifiedWith GO:0000287 , GO:0005524 , GO:0005737 , GO:0009252 , keyword:131 , keyword:132 , keyword:133 , keyword:436 , keyword:460 , keyword:547 , keyword:573 , keyword:67 , keyword:961 , keyword:963 . ?gene0 skos:prefLabel 'murE' . ?annotation1 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation . ?annotation2 a up:Pathway_Annotation ; rdfs:comment 'Cell wall biogenesis; peptidoglycan biosynthesis.' . ?annotation3 a up:Subcellular_Location_Annotation . ?annotation3li4 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation5 a up:PTM_Annotation ; rdfs:comment 'Carboxylation is probably crucial for Mg(2+) binding and, consequently, for the gamma-phosphate positioning of ATP.' . ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the MurCDEF family. MurE subfamily.' . ?case7 up:alternativeName ?name9 , ?name10 , ?name11 , ?name12 , ?name13 ; up:classifiedWith GO:0008765 ; up:recommendedName ?name8 . ?name8 up:ecName '6.3.2.13' ; up:fullName 'UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase' ; rdf:type up:Structured_Name . ?name9 up:fullName 'Meso-A2pm-adding enzyme' ; rdf:type up:Structured_Name . ?name10 up:fullName 'Meso-diaminopimelate-adding enzyme' ; rdf:type up:Structured_Name . ?name11 up:fullName 'UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase' ; rdf:type up:Structured_Name . ?name12 up:fullName 'UDP-MurNAc-tripeptide synthetase' ; rdf:type up:Structured_Name . ?name13 up:fullName 'UDP-N-acetylmuramyl-tripeptide synthetase' ; rdf:type up:Structured_Name . ?case14 up:alternativeName ?name16 , ?name17 , ?name18 , ?name19 ; up:classifiedWith GO:0047482 ; up:recommendedName ?name15 . ?name15 up:ecName '6.3.2.7' ; up:fullName 'UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase' ; rdf:type up:Structured_Name . ?name16 up:fullName 'L-lysine-adding enzyme' ; rdf:type up:Structured_Name . ?name17 up:fullName 'UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase' ; rdf:type up:Structured_Name . ?name18 up:fullName 'UDP-MurNAc-tripeptide synthetase' ; rdf:type up:Structured_Name . ?name19 up:fullName 'UDP-N-acetylmuramyl-tripeptide synthetase' ; rdf:type up:Structured_Name . ?case20 up:alternativeName ?name22 ; up:classifiedWith GO:0016881 ; up:recommendedName ?name21 . ?name21 up:ecName '6.3.2.-' ; up:fullName 'UDP-N-acetylmuramyl-tripeptide synthetase' ; rdf:type up:Structured_Name . ?name22 up:fullName 'UDP-MurNAc-tripeptide synthetase' ; rdf:type up:Structured_Name . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; rdf:type up:Motif_Annotation ; rdfs:comment 'L-lysine recognition motif' . ?pfsb25 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfs29 up:annotation ?annotation30 . ?annotation30 faldo:begin ?pfsb31 ; faldo:end ?pfse32 ; rdf:type up:Motif_Annotation ; rdfs:comment 'Meso-diaminopimelate recognition motif' . ?pfsb31 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse32 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; up:ligand ?ligand39 ; rdf:type up:Binding_Site_Annotation . ?pfsb37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?ligand39 rdfs:subClassOf chebi:30616 . ?pfs42 up:annotation ?annotation43 . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; up:ligand ?ligand46 ; rdf:type up:Binding_Site_Annotation . ?pfsb44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?ligand46 rdfs:subClassOf chebi:83900 . ?pfs49 up:annotation ?annotation50 . ?annotation50 faldo:begin ?pfsb51 ; faldo:end ?pfse52 ; up:ligand ?ligand53 ; rdf:type up:Binding_Site_Annotation . ?pfsb51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfse52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?ligand53 rdfs:subClassOf chebi:83900 . ?pfs56 up:annotation ?annotation57 . ?annotation57 faldo:begin ?pfsb58 ; faldo:end ?pfse59 ; up:ligand ?ligand60 ; rdf:type up:Binding_Site_Annotation . ?pfsb58 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?pfse59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?ligand60 rdfs:subClassOf chebi:83900 . ?pfs63 up:annotation ?annotation64 . ?annotation64 faldo:begin ?pfsb65 ; faldo:end ?pfse66 ; up:ligand ?ligand67 ; rdf:type up:Binding_Site_Annotation . ?pfsb65 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?pfse66 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?ligand67 rdfs:subClassOf chebi:83900 . ?pfs70 up:annotation ?annotation71 . ?annotation71 faldo:begin ?pfsb72 ; faldo:end ?pfse73 ; up:ligand ?ligand74 ; rdf:type up:Binding_Site_Annotation . ?pfsb72 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?pfse73 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?ligand74 rdfs:subClassOf chebi:83900 . ?pfs77 up:annotation ?annotation78 . ?annotation78 faldo:begin ?pfsb79 ; faldo:end ?pfse80 ; up:ligand ?ligand81 ; rdf:type up:Binding_Site_Annotation . ?pfsb79 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?pfse80 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?ligand81 rdfs:subClassOf chebi:83900 . ?pfs84 up:annotation ?annotation85 . ?annotation85 faldo:begin ?pfsb86 ; faldo:end ?pfse87 ; up:ligand ?ligand88 ; rdf:type up:Binding_Site_Annotation . ?pfsb86 faldo:position ?thisPositionOn89 ; rdf:type faldo:ExactPosition . ?pfse87 faldo:position ?thisPositionOn90 ; rdf:type faldo:ExactPosition . ?ligand88 rdfs:subClassOf chebi:83900 . ?pfs91 up:annotation ?annotation92 . ?annotation92 faldo:begin ?pfsb93 ; faldo:end ?pfse94 ; up:ligand ?ligand95 ; rdf:type up:Binding_Site_Annotation . ?pfsb93 faldo:position ?thisPositionOn96 ; rdf:type faldo:ExactPosition . ?pfse94 faldo:position ?thisPositionOn97 ; rdf:type faldo:ExactPosition . ?ligand95 rdfs:subClassOf chebi:83900 . ?pfs98 up:annotation ?annotation99 . ?annotation99 faldo:begin ?pfsb100 ; faldo:end ?pfse101 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-carboxylysine' . ?pfsb100 faldo:position ?thisPositionOn102 ; rdf:type faldo:ExactPosition . ?pfse101 faldo:position ?thisPositionOn103 ; rdf:type faldo:ExactPosition . ?pfs104 up:annotation ?annotation105 . ?annotation105 faldo:begin ?pfsb106 ; faldo:end ?pfse107 ; up:ligand ?ligand108 ; rdf:type up:Binding_Site_Annotation . ?pfsb106 faldo:position ?thisPositionOn109 ; rdf:type faldo:ExactPosition . ?pfse107 faldo:position ?thisPositionOn110 ; rdf:type faldo:ExactPosition . ?ligand108 rdfs:subClassOf chebi:57791 . ?pfs111 up:annotation ?annotation112 . ?annotation112 faldo:begin ?pfsb113 ; faldo:end ?pfse114 ; up:ligand ?ligand115 ; rdf:type up:Binding_Site_Annotation . ?pfsb113 faldo:position ?thisPositionOn116 ; rdf:type faldo:ExactPosition . ?pfse114 faldo:position ?thisPositionOn117 ; rdf:type faldo:ExactPosition . ?ligand115 rdfs:subClassOf chebi:57791 . ?pfs118 up:annotation ?annotation119 . ?annotation119 faldo:begin ?pfsb120 ; faldo:end ?pfse121 ; up:ligand ?ligand122 ; rdf:type up:Binding_Site_Annotation . ?pfsb120 faldo:position ?thisPositionOn123 ; rdf:type faldo:ExactPosition . ?pfse121 faldo:position ?thisPositionOn124 ; rdf:type faldo:ExactPosition . ?ligand122 rdfs:subClassOf chebi:57791 . ?pfs125 up:annotation ?annotation126 . ?annotation126 faldo:begin ?pfsb127 ; faldo:end ?pfse128 ; up:ligand ?ligand129 ; rdf:type up:Binding_Site_Annotation . ?pfsb127 faldo:position ?thisPositionOn130 ; rdf:type faldo:ExactPosition . ?pfse128 faldo:position ?thisPositionOn131 ; rdf:type faldo:ExactPosition . ?ligand129 rdfs:subClassOf chebi:57791 . _:86765 a rdf:Statement ; up:attribution _:86713 ; rdf:subject ?gene0 ; rdf:predicate up:encodedBy ; rdf:object ?gene0 . _:86766 a rdf:Statement ; up:attribution _:86714 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:86767 a rdf:Statement ; up:attribution _:86715 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:86768 a rdf:Statement ; up:attribution _:86716 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:86769 a rdf:Statement ; up:attribution _:86717 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:86770 a rdf:Statement ; up:attribution _:86718 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:86771 a rdf:Statement ; up:attribution _:86719 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:86772 a rdf:Statement ; up:attribution _:86720 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:131 . _:86773 a rdf:Statement ; up:attribution _:86721 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:132 . _:86774 a rdf:Statement ; up:attribution _:86722 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:133 . _:86775 a rdf:Statement ; up:attribution _:86723 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:961 . _:86776 a rdf:Statement ; up:attribution _:86724 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:86777 a rdf:Statement ; up:attribution _:86725 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:436 . _:86778 a rdf:Statement ; up:attribution _:86726 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:86779 a rdf:Statement ; up:attribution _:86727 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:86780 a rdf:Statement ; up:attribution _:86728 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:573 . _:86781 a rdf:Statement ; up:attribution _:86729 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:86782 a rdf:Statement ; up:attribution _:86730 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:86783 a rdf:Statement ; up:attribution _:86731 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009252 . _:86784 a rdf:Statement ; up:attribution _:86732 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:86785 a rdf:Statement ; up:attribution _:86733 ; rdf:subject ?case7 ; rdf:predicate up:recommendedName ; rdf:object ?name8 . _:86786 a rdf:Statement ; up:attribution _:86734 ; rdf:subject ?case7 ; rdf:predicate up:alternativeName ; rdf:object ?name9 . _:86787 a rdf:Statement ; up:attribution _:86735 ; rdf:subject ?case7 ; rdf:predicate up:alternativeName ; rdf:object ?name10 . _:86788 a rdf:Statement ; up:attribution _:86736 ; rdf:subject ?case7 ; rdf:predicate up:alternativeName ; rdf:object ?name11 . _:86789 a rdf:Statement ; up:attribution _:86737 ; rdf:subject ?case7 ; rdf:predicate up:alternativeName ; rdf:object ?name12 . _:86790 a rdf:Statement ; up:attribution _:86738 ; rdf:subject ?case7 ; rdf:predicate up:alternativeName ; rdf:object ?name13 . _:86791 a rdf:Statement ; up:attribution _:86739 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008765 . _:86792 a rdf:Statement ; up:attribution _:86740 ; rdf:subject ?case14 ; rdf:predicate up:recommendedName ; rdf:object ?name15 . _:86793 a rdf:Statement ; up:attribution _:86741 ; rdf:subject ?case14 ; rdf:predicate up:alternativeName ; rdf:object ?name16 . _:86794 a rdf:Statement ; up:attribution _:86742 ; rdf:subject ?case14 ; rdf:predicate up:alternativeName ; rdf:object ?name17 . _:86795 a rdf:Statement ; up:attribution _:86743 ; rdf:subject ?case14 ; rdf:predicate up:alternativeName ; rdf:object ?name18 . _:86796 a rdf:Statement ; up:attribution _:86744 ; rdf:subject ?case14 ; rdf:predicate up:alternativeName ; rdf:object ?name19 . _:86797 a rdf:Statement ; up:attribution _:86745 ; rdf:subject ?case14 ; rdf:predicate up:classifiedWith ; rdf:object GO:0047482 . _:86798 a rdf:Statement ; up:attribution _:86746 ; rdf:subject ?case20 ; rdf:predicate up:recommendedName ; rdf:object ?name21 . _:86799 a rdf:Statement ; up:attribution _:86747 ; rdf:subject ?case20 ; rdf:predicate up:alternativeName ; rdf:object ?name22 . _:86800 a rdf:Statement ; up:attribution _:86748 ; rdf:subject ?case20 ; rdf:predicate up:classifiedWith ; rdf:object GO:0016881 . _:86801 a rdf:Statement ; up:source unirule:MF_00208 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:86802 a rdf:Statement ; up:attribution _:86749 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:86803 a rdf:Statement ; up:source unirule:MF_00208 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:86804 a rdf:Statement ; up:attribution _:86750 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:86805 a rdf:Statement ; up:source unirule:MF_00208 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:86806 a rdf:Statement ; up:attribution _:86751 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:86807 a rdf:Statement ; up:source unirule:MF_00208 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:86808 a rdf:Statement ; up:attribution _:86752 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:86809 a rdf:Statement ; up:source unirule:MF_00208 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:86810 a rdf:Statement ; up:attribution _:86753 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:86811 a rdf:Statement ; up:source unirule:MF_00208 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:86812 a rdf:Statement ; up:attribution _:86754 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:86813 a rdf:Statement ; up:source unirule:MF_00208 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:86814 a rdf:Statement ; up:attribution _:86755 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:86815 a rdf:Statement ; up:source unirule:MF_00208 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:86816 a rdf:Statement ; up:attribution _:86756 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:86817 a rdf:Statement ; up:source unirule:MF_00208 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:86818 a rdf:Statement ; up:attribution _:86757 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:86819 a rdf:Statement ; up:source unirule:MF_00208 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:86820 a rdf:Statement ; up:attribution _:86758 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:86821 a rdf:Statement ; up:source unirule:MF_00208 ; rdf:subject ?pfs91 ; rdf:predicate up:annotation ; rdf:object ?annotation92 . _:86822 a rdf:Statement ; up:attribution _:86759 ; rdf:subject ?pfs91 ; rdf:predicate up:annotation ; rdf:object ?annotation92 . _:86823 a rdf:Statement ; up:source unirule:MF_00208 ; rdf:subject ?pfs98 ; rdf:predicate up:annotation ; rdf:object ?annotation99 . _:86824 a rdf:Statement ; up:attribution _:86760 ; rdf:subject ?pfs98 ; rdf:predicate up:annotation ; rdf:object ?annotation99 . _:86825 a rdf:Statement ; up:source unirule:MF_00208 ; rdf:subject ?pfs104 ; rdf:predicate up:annotation ; rdf:object ?annotation105 . _:86826 a rdf:Statement ; up:attribution _:86761 ; rdf:subject ?pfs104 ; rdf:predicate up:annotation ; rdf:object ?annotation105 . _:86827 a rdf:Statement ; up:source unirule:MF_00208 ; rdf:subject ?pfs111 ; rdf:predicate up:annotation ; rdf:object ?annotation112 . _:86828 a rdf:Statement ; up:attribution _:86762 ; rdf:subject ?pfs111 ; rdf:predicate up:annotation ; rdf:object ?annotation112 . _:86829 a rdf:Statement ; up:source unirule:MF_00208 ; rdf:subject ?pfs118 ; rdf:predicate up:annotation ; rdf:object ?annotation119 . _:86830 a rdf:Statement ; up:attribution _:86763 ; rdf:subject ?pfs118 ; rdf:predicate up:annotation ; rdf:object ?annotation119 . _:86831 a rdf:Statement ; up:source unirule:MF_00208 ; rdf:subject ?pfs125 ; rdf:predicate up:annotation ; rdf:object ?annotation126 . _:86832 a rdf:Statement ; up:attribution _:86764 ; rdf:subject ?pfs125 ; rdf:predicate up:annotation ; rdf:object ?annotation126 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00208 #Rule MF_00208 Created by:? on:2005-02-28 Modified by:Elisabeth Coudert on:2025-01-09 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00208 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00208a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_00208a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00208a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00208a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00208a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionQ2FZP6137 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ2FZP6139 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ2FZP6MF_00208132 . ?templateMotifSequenceMatchRegionQ2FZP6137 faldo:begin ?templateMotifSequenceMatchBeginQ2FZP6138 . ?templateMotifSequenceMatchBeginQ2FZP6138 faldo:position ?templateMotifSequenceMatchBeginPositionQ2FZP6133 ; faldo:reference isoform:Q2FZP6-1 . ?templateMotifSequenceProfileAlignmentOperationQ2FZP6139 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . ?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208143 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ2FZP6MF_00208134 . ?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208142 . ?targetMotifMatchRegionMatchBeginMF_00208142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208135 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00208143 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFT_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ2FZP6MF_00208132, 1, (STRLEN(?templateMotifCigarQ2FZP6MF_00208132) - STRLEN(REPLACE(?templateMotifCigarQ2FZP6MF_00208132, CONCAT('^(?:-*[^-]){', STR(((406 - ?templateMotifSequenceMatchBeginPositionQ2FZP6133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ2FZP6MF_00208134, 1, (STRLEN(?targetMotifMatchCigarQ2FZP6MF_00208134) - STRLEN(REPLACE(?targetMotifMatchCigarQ2FZP6MF_00208134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ2FZP6MF_00208134, 1, (STRLEN(?targetMotifMatchCigarQ2FZP6MF_00208134) - STRLEN(REPLACE(?targetMotifMatchCigarQ2FZP6MF_00208134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) . BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00208135) - 1) AS ?thisPositionOn27) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ2FZP6MF_00208132, 1, (STRLEN(?templateMotifCigarQ2FZP6MF_00208132) - STRLEN(REPLACE(?templateMotifCigarQ2FZP6MF_00208132, CONCAT('^(?:-*[^-]){', STR(((409 - ?templateMotifSequenceMatchBeginPositionQ2FZP6133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ2FZP6MF_00208134, 1, (STRLEN(?targetMotifMatchCigarQ2FZP6MF_00208134) - STRLEN(REPLACE(?targetMotifMatchCigarQ2FZP6MF_00208134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ2FZP6MF_00208134, 1, (STRLEN(?targetMotifMatchCigarQ2FZP6MF_00208134) - STRLEN(REPLACE(?targetMotifMatchCigarQ2FZP6MF_00208134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) . BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_00208135) - 1) AS ?thisPositionOn28) . BIND(?this AS ?pfs1t148) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) . FILTER (REGEX('D[DN]P[NA]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) . BIND(URI(CONCAT(STR(?this), '#MF_00208a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP22188154 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188156 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22188MF_00208149 . ?templateMotifSequenceMatchRegionP22188154 faldo:begin ?templateMotifSequenceMatchBeginP22188155 . ?templateMotifSequenceMatchBeginP22188155 faldo:position ?templateMotifSequenceMatchBeginPositionP22188150 ; faldo:reference isoform:P22188-1 . ?templateMotifSequenceProfileAlignmentOperationP22188156 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . ?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208160 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22188MF_00208151 . ?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208159 . ?targetMotifMatchRegionMatchBeginMF_00208159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208152 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00208160 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFT_5) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208149, 1, (STRLEN(?templateMotifCigarP22188MF_00208149) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208149, CONCAT('^(?:-*[^-]){', STR(((414 - ?templateMotifSequenceMatchBeginPositionP22188150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208151, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208151) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208151, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208151) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) . BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_00208152) - 1) AS ?thisPositionOn33) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208149, 1, (STRLEN(?templateMotifCigarP22188MF_00208149) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208149, CONCAT('^(?:-*[^-]){', STR(((417 - ?templateMotifSequenceMatchBeginPositionP22188150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208151, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208151) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208151, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208151) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) . BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_00208152) - 1) AS ?thisPositionOn34) . BIND(?this AS ?pfs2t165) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)) = 'DNPR')) . BIND(URI(CONCAT(STR(?this), '#MF_00208a30')) AS ?annotation30) . BIND(?this AS ?pfs29) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch170 faldo:location ?templateMotifSequenceMatchRegionP22188171 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188173 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22188MF_00208166 . ?templateMotifSequenceMatchRegionP22188171 faldo:begin ?templateMotifSequenceMatchBeginP22188172 . ?templateMotifSequenceMatchBeginP22188172 faldo:position ?templateMotifSequenceMatchBeginPositionP22188167 ; faldo:reference isoform:P22188-1 . ?templateMotifSequenceProfileAlignmentOperationP22188173 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . ?targetMotifMatch174 faldo:location ?targetMotifMatchRegionMatch175 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208177 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22188MF_00208168 . ?targetMotifMatchRegionMatch175 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208176 . ?targetMotifMatchRegionMatchBeginMF_00208176 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208169 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00208177 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208166, 1, (STRLEN(?templateMotifCigarP22188MF_00208166) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208166, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionP22188167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208168, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208168) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208168, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208168) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) . BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_00208169) - 1) AS ?thisPositionOn40) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208166, 1, (STRLEN(?templateMotifCigarP22188MF_00208166) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208166, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionP22188167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208168, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208168) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208168, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208168) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) . BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_00208169) - 1) AS ?thisPositionOn41) . BIND(?this AS ?pfs3t182) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) . FILTER (REGEX('GT[ARNDCQEGHILKMFPSTWYVBZJUOX]GK[ST][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn40, (?thisPositionOn41 - ?thisPositionOn40)))) . BIND(URI(CONCAT(STR(?this), '#MF_00208a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionP22188188 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188190 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22188MF_00208183 . ?templateMotifSequenceMatchRegionP22188188 faldo:begin ?templateMotifSequenceMatchBeginP22188189 . ?templateMotifSequenceMatchBeginP22188189 faldo:position ?templateMotifSequenceMatchBeginPositionP22188184 ; faldo:reference isoform:P22188-1 . ?templateMotifSequenceProfileAlignmentOperationP22188190 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . ?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208194 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22188MF_00208185 . ?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208193 . ?targetMotifMatchRegionMatchBeginMF_00208193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208186 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00208194 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208183, 1, (STRLEN(?templateMotifCigarP22188MF_00208183) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208183, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP22188184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208185, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208185) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208185, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208185) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) . BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00208186) - 1) AS ?thisPositionOn47) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208183, 1, (STRLEN(?templateMotifCigarP22188MF_00208183) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208183, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP22188184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208185, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208185) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208185, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208185) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) . BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_00208186) - 1) AS ?thisPositionOn48) . BIND(?this AS ?pfs3t199) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) . FILTER (REGEX('H[QRK][AVCT]', SUBSTR(?thisSequenceValue, ?thisPositionOn47, (?thisPositionOn48 - ?thisPositionOn47)))) . BIND(URI(CONCAT(STR(?this), '#MF_00208a43')) AS ?annotation43) . BIND(?this AS ?pfs42) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch204 faldo:location ?templateMotifSequenceMatchRegionP22188205 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188207 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22188MF_00208200 . ?templateMotifSequenceMatchRegionP22188205 faldo:begin ?templateMotifSequenceMatchBeginP22188206 . ?templateMotifSequenceMatchBeginP22188206 faldo:position ?templateMotifSequenceMatchBeginPositionP22188201 ; faldo:reference isoform:P22188-1 . ?templateMotifSequenceProfileAlignmentOperationP22188207 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . ?targetMotifMatch208 faldo:location ?targetMotifMatchRegionMatch209 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208211 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22188MF_00208202 . ?targetMotifMatchRegionMatch209 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208210 . ?targetMotifMatchRegionMatchBeginMF_00208210 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208203 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00208211 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208200, 1, (STRLEN(?templateMotifCigarP22188MF_00208200) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208200, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionP22188201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208202, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208202) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208202, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208202) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) . BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_00208203) - 1) AS ?thisPositionOn54) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208200, 1, (STRLEN(?templateMotifCigarP22188MF_00208200) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208200, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionP22188201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208202, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208202) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208202, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208202) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) . BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_00208203) - 1) AS ?thisPositionOn55) . BIND(?this AS ?pfs3t216) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) . FILTER (REGEX('[TS]T', SUBSTR(?thisSequenceValue, ?thisPositionOn54, (?thisPositionOn55 - ?thisPositionOn54)))) . BIND(URI(CONCAT(STR(?this), '#MF_00208a50')) AS ?annotation50) . BIND(?this AS ?pfs49) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch221 faldo:location ?templateMotifSequenceMatchRegionP22188222 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188224 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22188MF_00208217 . ?templateMotifSequenceMatchRegionP22188222 faldo:begin ?templateMotifSequenceMatchBeginP22188223 . ?templateMotifSequenceMatchBeginP22188223 faldo:position ?templateMotifSequenceMatchBeginPositionP22188218 ; faldo:reference isoform:P22188-1 . ?templateMotifSequenceProfileAlignmentOperationP22188224 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . ?targetMotifMatch225 faldo:location ?targetMotifMatchRegionMatch226 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208228 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22188MF_00208219 . ?targetMotifMatchRegionMatch226 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208227 . ?targetMotifMatchRegionMatchBeginMF_00208227 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208220 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00208228 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208217, 1, (STRLEN(?templateMotifCigarP22188MF_00208217) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208217, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP22188218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208219, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208219) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208219, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208219) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) . BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_00208220) - 1) AS ?thisPositionOn61) . BIND(?thisPositionOn61 AS ?thisPositionOn62) . BIND(?this AS ?pfs3t231) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'L')) . BIND(URI(CONCAT(STR(?this), '#MF_00208a57')) AS ?annotation57) . BIND(?this AS ?pfs56) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch236 faldo:location ?templateMotifSequenceMatchRegionP22188237 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188239 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22188MF_00208232 . ?templateMotifSequenceMatchRegionP22188237 faldo:begin ?templateMotifSequenceMatchBeginP22188238 . ?templateMotifSequenceMatchBeginP22188238 faldo:position ?templateMotifSequenceMatchBeginPositionP22188233 ; faldo:reference isoform:P22188-1 . ?templateMotifSequenceProfileAlignmentOperationP22188239 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . ?targetMotifMatch240 faldo:location ?targetMotifMatchRegionMatch241 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208243 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22188MF_00208234 . ?targetMotifMatchRegionMatch241 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208242 . ?targetMotifMatchRegionMatchBeginMF_00208242 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208235 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00208243 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208232, 1, (STRLEN(?templateMotifCigarP22188MF_00208232) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208232, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionP22188233) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1244) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208234, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208234) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208234, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208234) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), '')))), '[^-]', ''))) AS ?step2245) . BIND(((?step2245 + ?targetMotifMatchRegionMatchBeginPositionMF_00208235) - 1) AS ?thisPositionOn68) . BIND(?thisPositionOn68 AS ?thisPositionOn69) . BIND(?this AS ?pfs3t246) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00208a64')) AS ?annotation64) . BIND(?this AS ?pfs63) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch251 faldo:location ?templateMotifSequenceMatchRegionP22188252 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188254 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22188MF_00208247 . ?templateMotifSequenceMatchRegionP22188252 faldo:begin ?templateMotifSequenceMatchBeginP22188253 . ?templateMotifSequenceMatchBeginP22188253 faldo:position ?templateMotifSequenceMatchBeginPositionP22188248 ; faldo:reference isoform:P22188-1 . ?templateMotifSequenceProfileAlignmentOperationP22188254 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . ?targetMotifMatch255 faldo:location ?targetMotifMatchRegionMatch256 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208258 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22188MF_00208249 . ?targetMotifMatchRegionMatch256 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208257 . ?targetMotifMatchRegionMatchBeginMF_00208257 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208250 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00208258 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208247, 1, (STRLEN(?templateMotifCigarP22188MF_00208247) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208247, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionP22188248) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1259) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208249, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208249) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208249, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208249) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), '')))), '[^-]', ''))) AS ?step2260) . BIND(((?step2260 + ?targetMotifMatchRegionMatchBeginPositionMF_00208250) - 1) AS ?thisPositionOn75) . BIND(?thisPositionOn75 AS ?thisPositionOn76) . BIND(?this AS ?pfs3t261) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) . FILTER (REGEX('[NQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00208a71')) AS ?annotation71) . BIND(?this AS ?pfs70) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch266 faldo:location ?templateMotifSequenceMatchRegionP22188267 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188269 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22188MF_00208262 . ?templateMotifSequenceMatchRegionP22188267 faldo:begin ?templateMotifSequenceMatchBeginP22188268 . ?templateMotifSequenceMatchBeginP22188268 faldo:position ?templateMotifSequenceMatchBeginPositionP22188263 ; faldo:reference isoform:P22188-1 . ?templateMotifSequenceProfileAlignmentOperationP22188269 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . ?targetMotifMatch270 faldo:location ?targetMotifMatchRegionMatch271 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208273 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22188MF_00208264 . ?targetMotifMatchRegionMatch271 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208272 . ?targetMotifMatchRegionMatchBeginMF_00208272 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208265 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00208273 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208262, 1, (STRLEN(?templateMotifCigarP22188MF_00208262) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208262, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionP22188263) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1274) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208264, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208264) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208264, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208264) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), '')))), '[^-]', ''))) AS ?step2275) . BIND(((?step2275 + ?targetMotifMatchRegionMatchBeginPositionMF_00208265) - 1) AS ?thisPositionOn82) . BIND(?thisPositionOn82 AS ?thisPositionOn83) . BIND(?this AS ?pfs3t276) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00208a78')) AS ?annotation78) . BIND(?this AS ?pfs77) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch281 faldo:location ?templateMotifSequenceMatchRegionP22188282 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188284 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22188MF_00208277 . ?templateMotifSequenceMatchRegionP22188282 faldo:begin ?templateMotifSequenceMatchBeginP22188283 . ?templateMotifSequenceMatchBeginP22188283 faldo:position ?templateMotifSequenceMatchBeginPositionP22188278 ; faldo:reference isoform:P22188-1 . ?templateMotifSequenceProfileAlignmentOperationP22188284 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . ?targetMotifMatch285 faldo:location ?targetMotifMatchRegionMatch286 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208288 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22188MF_00208279 . ?targetMotifMatchRegionMatch286 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208287 . ?targetMotifMatchRegionMatchBeginMF_00208287 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208280 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00208288 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208277, 1, (STRLEN(?templateMotifCigarP22188MF_00208277) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208277, CONCAT('^(?:-*[^-]){', STR(((191 - ?templateMotifSequenceMatchBeginPositionP22188278) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1289) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208279, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208279) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208279, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208279) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), '')))), '[^-]', ''))) AS ?step2290) . BIND(((?step2290 + ?targetMotifMatchRegionMatchBeginPositionMF_00208280) - 1) AS ?thisPositionOn89) . BIND(?thisPositionOn89 AS ?thisPositionOn90) . BIND(?this AS ?pfs3t291) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_00208a85')) AS ?annotation85) . BIND(?this AS ?pfs84) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch296 faldo:location ?templateMotifSequenceMatchRegionP22188297 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188299 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22188MF_00208292 . ?templateMotifSequenceMatchRegionP22188297 faldo:begin ?templateMotifSequenceMatchBeginP22188298 . ?templateMotifSequenceMatchBeginP22188298 faldo:position ?templateMotifSequenceMatchBeginPositionP22188293 ; faldo:reference isoform:P22188-1 . ?templateMotifSequenceProfileAlignmentOperationP22188299 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . ?targetMotifMatch300 faldo:location ?targetMotifMatchRegionMatch301 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208303 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22188MF_00208294 . ?targetMotifMatchRegionMatch301 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208302 . ?targetMotifMatchRegionMatchBeginMF_00208302 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208295 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00208303 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208292, 1, (STRLEN(?templateMotifCigarP22188MF_00208292) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208292, CONCAT('^(?:-*[^-]){', STR(((193 - ?templateMotifSequenceMatchBeginPositionP22188293) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1304) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208294, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208294) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208294, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208294) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), '')))), '[^-]', ''))) AS ?step2305) . BIND(((?step2305 + ?targetMotifMatchRegionMatchBeginPositionMF_00208295) - 1) AS ?thisPositionOn96) . BIND(?thisPositionOn96 AS ?thisPositionOn97) . BIND(?this AS ?pfs3t306) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb93) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse94) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00208a92')) AS ?annotation92) . BIND(?this AS ?pfs91) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch311 faldo:location ?templateMotifSequenceMatchRegionP22188312 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188314 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22188MF_00208307 . ?templateMotifSequenceMatchRegionP22188312 faldo:begin ?templateMotifSequenceMatchBeginP22188313 . ?templateMotifSequenceMatchBeginP22188313 faldo:position ?templateMotifSequenceMatchBeginPositionP22188308 ; faldo:reference isoform:P22188-1 . ?templateMotifSequenceProfileAlignmentOperationP22188314 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . ?targetMotifMatch315 faldo:location ?targetMotifMatchRegionMatch316 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208318 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22188MF_00208309 . ?targetMotifMatchRegionMatch316 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208317 . ?targetMotifMatchRegionMatchBeginMF_00208317 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208310 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00208318 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208307, 1, (STRLEN(?templateMotifCigarP22188MF_00208307) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208307, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionP22188308) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1319) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208309, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208309) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1319), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208309, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208309) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1319), '}'), '')))), '[^-]', ''))) AS ?step2320) . BIND(((?step2320 + ?targetMotifMatchRegionMatchBeginPositionMF_00208310) - 1) AS ?thisPositionOn102) . BIND(?thisPositionOn102 AS ?thisPositionOn103) . BIND(?this AS ?pfs3t321) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb100) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse101) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00208a99')) AS ?annotation99) . BIND(?this AS ?pfs98) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch326 faldo:location ?templateMotifSequenceMatchRegionP22188327 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188329 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22188MF_00208322 . ?templateMotifSequenceMatchRegionP22188327 faldo:begin ?templateMotifSequenceMatchBeginP22188328 . ?templateMotifSequenceMatchBeginP22188328 faldo:position ?templateMotifSequenceMatchBeginPositionP22188323 ; faldo:reference isoform:P22188-1 . ?templateMotifSequenceProfileAlignmentOperationP22188329 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . ?targetMotifMatch330 faldo:location ?targetMotifMatchRegionMatch331 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208333 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22188MF_00208324 . ?targetMotifMatchRegionMatch331 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208332 . ?targetMotifMatchRegionMatchBeginMF_00208332 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208325 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00208333 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208322, 1, (STRLEN(?templateMotifCigarP22188MF_00208322) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208322, CONCAT('^(?:-*[^-]){', STR(((414 - ?templateMotifSequenceMatchBeginPositionP22188323) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1334) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208324, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208324) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1334), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208324, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208324) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1334), '}'), '')))), '[^-]', ''))) AS ?step2335) . BIND(((?step2335 + ?targetMotifMatchRegionMatchBeginPositionMF_00208325) - 1) AS ?thisPositionOn109) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208322, 1, (STRLEN(?templateMotifCigarP22188MF_00208322) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208322, CONCAT('^(?:-*[^-]){', STR(((417 - ?templateMotifSequenceMatchBeginPositionP22188323) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1336) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208324, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208324) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1336), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208324, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208324) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1336), '}'), '')))), '[^-]', ''))) AS ?step2337) . BIND(((?step2337 + ?targetMotifMatchRegionMatchBeginPositionMF_00208325) - 1) AS ?thisPositionOn110) . BIND(?this AS ?pfs4t338) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb106) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse107) . FILTER (REGEX('DN[ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn109, (?thisPositionOn110 - ?thisPositionOn109)))) . BIND(URI(CONCAT(STR(?this), '#MF_00208a105')) AS ?annotation105) . BIND(?this AS ?pfs104) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch343 faldo:location ?templateMotifSequenceMatchRegionP22188344 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188346 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22188MF_00208339 . ?templateMotifSequenceMatchRegionP22188344 faldo:begin ?templateMotifSequenceMatchBeginP22188345 . ?templateMotifSequenceMatchBeginP22188345 faldo:position ?templateMotifSequenceMatchBeginPositionP22188340 ; faldo:reference isoform:P22188-1 . ?templateMotifSequenceProfileAlignmentOperationP22188346 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . ?targetMotifMatch347 faldo:location ?targetMotifMatchRegionMatch348 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208350 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22188MF_00208341 . ?targetMotifMatchRegionMatch348 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208349 . ?targetMotifMatchRegionMatchBeginMF_00208349 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208342 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00208350 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208339, 1, (STRLEN(?templateMotifCigarP22188MF_00208339) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208339, CONCAT('^(?:-*[^-]){', STR(((390 - ?templateMotifSequenceMatchBeginPositionP22188340) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1351) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208341, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208341) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208341, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208341) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), '')))), '[^-]', ''))) AS ?step2352) . BIND(((?step2352 + ?targetMotifMatchRegionMatchBeginPositionMF_00208342) - 1) AS ?thisPositionOn116) . BIND(?thisPositionOn116 AS ?thisPositionOn117) . BIND(?this AS ?pfs4t353) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfsb113) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfse114) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn116, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00208a112')) AS ?annotation112) . BIND(?this AS ?pfs111) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch358 faldo:location ?templateMotifSequenceMatchRegionP22188359 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188361 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22188MF_00208354 . ?templateMotifSequenceMatchRegionP22188359 faldo:begin ?templateMotifSequenceMatchBeginP22188360 . ?templateMotifSequenceMatchBeginP22188360 faldo:position ?templateMotifSequenceMatchBeginPositionP22188355 ; faldo:reference isoform:P22188-1 . ?templateMotifSequenceProfileAlignmentOperationP22188361 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . ?targetMotifMatch362 faldo:location ?targetMotifMatchRegionMatch363 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208365 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22188MF_00208356 . ?targetMotifMatchRegionMatch363 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208364 . ?targetMotifMatchRegionMatchBeginMF_00208364 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208357 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00208365 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208354, 1, (STRLEN(?templateMotifCigarP22188MF_00208354) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208354, CONCAT('^(?:-*[^-]){', STR(((465 - ?templateMotifSequenceMatchBeginPositionP22188355) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1366) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208356, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208356) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1366), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208356, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208356) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1366), '}'), '')))), '[^-]', ''))) AS ?step2367) . BIND(((?step2367 + ?targetMotifMatchRegionMatchBeginPositionMF_00208357) - 1) AS ?thisPositionOn123) . BIND(?thisPositionOn123 AS ?thisPositionOn124) . BIND(?this AS ?pfs4t368) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfsb120) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfse121) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn123, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_00208a119')) AS ?annotation119) . BIND(?this AS ?pfs118) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch373 faldo:location ?templateMotifSequenceMatchRegionP22188374 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22188376 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22188MF_00208369 . ?templateMotifSequenceMatchRegionP22188374 faldo:begin ?templateMotifSequenceMatchBeginP22188375 . ?templateMotifSequenceMatchBeginP22188375 faldo:position ?templateMotifSequenceMatchBeginPositionP22188370 ; faldo:reference isoform:P22188-1 . ?templateMotifSequenceProfileAlignmentOperationP22188376 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . ?targetMotifMatch377 faldo:location ?targetMotifMatchRegionMatch378 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00208380 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22188MF_00208371 . ?targetMotifMatchRegionMatch378 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00208379 . ?targetMotifMatchRegionMatchBeginMF_00208379 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00208372 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00208380 edam:has_input signature:MF_00208 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22188MF_00208369, 1, (STRLEN(?templateMotifCigarP22188MF_00208369) - STRLEN(REPLACE(?templateMotifCigarP22188MF_00208369, CONCAT('^(?:-*[^-]){', STR(((469 - ?templateMotifSequenceMatchBeginPositionP22188370) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1381) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22188MF_00208371, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208371) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1381), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22188MF_00208371, 1, (STRLEN(?targetMotifMatchCigarP22188MF_00208371) - STRLEN(REPLACE(?targetMotifMatchCigarP22188MF_00208371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1381), '}'), '')))), '[^-]', ''))) AS ?step2382) . BIND(((?step2382 + ?targetMotifMatchRegionMatchBeginPositionMF_00208372) - 1) AS ?thisPositionOn130) . BIND(?thisPositionOn130 AS ?thisPositionOn131) . BIND(?this AS ?pfs4t383) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn130))) AS ?pfsb127) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfse128) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn130, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00208a126')) AS ?annotation126) . BIND(?this AS ?pfs125) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag384) . BIND(URI(CONCAT(STR(?this), '#MF_00208a8')) AS ?name8) . BIND(URI(CONCAT(STR(?this), '#MF_00208a9')) AS ?name9) . BIND(URI(CONCAT(STR(?this), '#MF_00208a10')) AS ?name10) . BIND(URI(CONCAT(STR(?this), '#MF_00208a11')) AS ?name11) . BIND(URI(CONCAT(STR(?this), '#MF_00208a12')) AS ?name12) . BIND(URI(CONCAT(STR(?this), '#MF_00208a13')) AS ?name13) . } BIND(IF(BOUND(?tagFT_5), ?caseWithTag384, ?UNBOUND_VARIABLE) AS ?case7) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag385) . BIND(URI(CONCAT(STR(?this), '#MF_00208a15')) AS ?name15) . BIND(URI(CONCAT(STR(?this), '#MF_00208a16')) AS ?name16) . BIND(URI(CONCAT(STR(?this), '#MF_00208a17')) AS ?name17) . BIND(URI(CONCAT(STR(?this), '#MF_00208a18')) AS ?name18) . BIND(URI(CONCAT(STR(?this), '#MF_00208a19')) AS ?name19) . } BIND(IF((BOUND(?tagFT_1) || BOUND(?tagFT_5)), ?caseWithTag385, ?UNBOUND_VARIABLE) AS ?case14) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag386) . BIND(URI(CONCAT(STR(?this), '#MF_00208a21')) AS ?name21) . BIND(URI(CONCAT(STR(?this), '#MF_00208a22')) AS ?name22) . } BIND(IF((BOUND(?tagFT_1) || BOUND(?tagFT_5)), ?caseWithTag386, ?UNBOUND_VARIABLE) AS ?case20) . }