CONSTRUCT { _:104577 up:source unirule:MF_00253 . _:104578 up:source unirule:MF_00253 . _:104579 up:source unirule:MF_00253 . _:104580 up:source unirule:MF_00253 . _:104581 up:source unirule:MF_00253 . _:104582 up:source unirule:MF_00253 . _:104583 up:source unirule:MF_00253 . _:104584 up:source unirule:MF_00253 . _:104585 up:source unirule:MF_00253 . _:104586 up:source unirule:MF_00253 . _:104587 up:source unirule:MF_00253 . _:104588 up:source unirule:MF_00253 . _:104589 up:source unirule:MF_00253 . _:104590 up:source unirule:MF_00253 . _:104591 up:source unirule:MF_00253 . _:104592 up:source unirule:MF_00253 . _:104593 up:source unirule:MF_00253 . _:104594 up:source unirule:MF_00253 . _:104595 up:source unirule:MF_00253 . _:104596 up:source unirule:MF_00253 . _:104597 up:source unirule:MF_00253 . _:104598 up:source unirule:MF_00253 . _:104599 up:source unirule:MF_00253 . _:104600 up:source unirule:MF_00253 . _:104601 up:source unirule:MF_00253 . _:104602 up:source unirule:MF_00253 . _:104603 up:source unirule:MF_00253 . _:104604 up:source unirule:MF_00253 . _:104605 up:source unirule:MF_00253 . _:104606 up:source unirule:MF_00253 . _:104607 up:source unirule:MF_00253 . _:104608 up:source unirule:MF_00253 . ?this up:alternativeName ?name1 ; up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation7 ; up:classifiedWith GO:0004820 , GO:0005524 , GO:0005737 , GO:0006426 , keyword:30 , keyword:436 , keyword:547 , keyword:648 , keyword:67 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '6.1.1.14' ; up:fullName 'Glycine--tRNA ligase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Glycyl-tRNA synthetase' ; up:shortName 'GlyRS' ; rdf:type up:Structured_Name . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Catalyzes the attachment of glycine to tRNA(Gly).' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/16013>; up:enzymeClass <http://purl.uniprot.org/enzyme/6.1.1.14>. ?annotation5 a up:Subcellular_Location_Annotation . ?annotation5li6 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation7 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the class-II aminoacyl-tRNA synthetase family.' . ?pfs10 up:annotation ?annotation11 . ?annotation11 faldo:begin ?pfsb12 ; faldo:end ?pfse13 ; up:ligand ?ligand14 ; rdf:type up:Binding_Site_Annotation . ?pfsb12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?ligand14 rdfs:subClassOf chebi:30616 . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; up:ligand ?ligand21 ; rdf:type up:Binding_Site_Annotation . ?pfsb19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?ligand21 rdfs:subClassOf chebi:30616 . ?pfs24 up:annotation ?annotation25 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; up:ligand ?ligand28 ; rdf:type up:Binding_Site_Annotation . ?pfsb26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?ligand28 rdfs:subClassOf chebi:30616 . ?pfs31 up:annotation ?annotation32 . ?annotation32 faldo:begin ?pfsb33 ; faldo:end ?pfse34 ; up:ligand ?ligand35 ; rdf:type up:Binding_Site_Annotation . ?pfsb33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?ligand35 rdfs:subClassOf chebi:30616 . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; up:ligand ?ligand42 ; rdf:type up:Binding_Site_Annotation . ?pfsb40 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?ligand42 rdfs:subClassOf ?molecule43 . ?molecule43 rdfs:label 'substrate' . ?pfs46 up:annotation ?annotation47 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; up:ligand ?ligand50 ; rdf:type up:Binding_Site_Annotation . ?pfsb48 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand50 rdfs:subClassOf ?molecule51 . ?molecule51 rdfs:label 'substrate' . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf ?molecule59 . ?molecule59 rdfs:label 'substrate' . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; up:ligand ?ligand66 ; rdf:type up:Binding_Site_Annotation . ?pfsb64 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?ligand66 rdfs:subClassOf ?molecule67 . ?molecule67 rdfs:label 'substrate' . ?pfs70 up:annotation ?annotation71 . ?annotation71 faldo:begin ?pfsb72 ; faldo:end ?pfse73 ; up:ligand ?ligand74 ; rdf:type up:Binding_Site_Annotation . ?pfsb72 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?pfse73 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?ligand74 rdfs:subClassOf chebi:30616 . ?pfs77 up:annotation ?annotation78 . ?annotation78 faldo:begin ?pfsb79 ; faldo:end ?pfse80 ; up:ligand ?ligand81 ; rdf:type up:Binding_Site_Annotation . ?pfsb79 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?pfse80 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?ligand81 rdfs:subClassOf chebi:30616 . ?pfs84 up:annotation ?annotation85 . ?annotation85 faldo:begin ?pfsb86 ; faldo:end ?pfse87 ; up:ligand ?ligand88 ; rdf:type up:Binding_Site_Annotation . ?pfsb86 faldo:position ?thisPositionOn89 ; rdf:type faldo:ExactPosition . ?pfse87 faldo:position ?thisPositionOn90 ; rdf:type faldo:ExactPosition . ?ligand88 rdfs:subClassOf chebi:30616 . ?pfs91 up:annotation ?annotation92 . ?annotation92 faldo:begin ?pfsb93 ; faldo:end ?pfse94 ; up:ligand ?ligand95 ; rdf:type up:Binding_Site_Annotation . ?pfsb93 faldo:position ?thisPositionOn96 ; rdf:type faldo:ExactPosition . ?pfse94 faldo:position ?thisPositionOn97 ; rdf:type faldo:ExactPosition . ?ligand95 rdfs:subClassOf chebi:30616 . ?pfs98 up:annotation ?annotation99 . ?annotation99 faldo:begin ?pfsb100 ; faldo:end ?pfse101 ; up:ligand ?ligand102 ; rdf:type up:Binding_Site_Annotation . ?pfsb100 faldo:position ?thisPositionOn104 ; rdf:type faldo:ExactPosition . ?pfse101 faldo:position ?thisPositionOn105 ; rdf:type faldo:ExactPosition . ?ligand102 rdfs:subClassOf ?molecule103 . ?molecule103 rdfs:label 'substrate' . ?pfs106 up:annotation ?annotation107 . ?annotation107 faldo:begin ?pfsb108 ; faldo:end ?pfse109 ; up:ligand ?ligand110 ; rdf:type up:Binding_Site_Annotation . ?pfsb108 faldo:position ?thisPositionOn112 ; rdf:type faldo:ExactPosition . ?pfse109 faldo:position ?thisPositionOn113 ; rdf:type faldo:ExactPosition . ?ligand110 rdfs:subClassOf ?molecule111 . ?molecule111 rdfs:label 'substrate' . ?pfs114 up:annotation ?annotation115 . ?annotation115 faldo:begin ?pfsb116 ; faldo:end ?pfse117 ; up:ligand ?ligand118 ; rdf:type up:Binding_Site_Annotation . ?pfsb116 faldo:position ?thisPositionOn120 ; rdf:type faldo:ExactPosition . ?pfse117 faldo:position ?thisPositionOn121 ; rdf:type faldo:ExactPosition . ?ligand118 rdfs:subClassOf ?molecule119 . ?molecule119 rdfs:label 'substrate' . ?pfs122 up:annotation ?annotation123 . ?annotation123 faldo:begin ?pfsb124 ; faldo:end ?pfse125 ; up:ligand ?ligand126 ; rdf:type up:Binding_Site_Annotation . ?pfsb124 faldo:position ?thisPositionOn128 ; rdf:type faldo:ExactPosition . ?pfse125 faldo:position ?thisPositionOn129 ; rdf:type faldo:ExactPosition . ?ligand126 rdfs:subClassOf ?molecule127 . ?molecule127 rdfs:label 'substrate' . _:104609 a rdf:Statement ; up:attribution _:104577 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:104610 a rdf:Statement ; up:attribution _:104578 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:104611 a rdf:Statement ; up:attribution _:104579 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:104612 a rdf:Statement ; up:attribution _:104580 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:104613 a rdf:Statement ; up:attribution _:104581 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:104614 a rdf:Statement ; up:attribution _:104582 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:104615 a rdf:Statement ; up:attribution _:104583 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:104616 a rdf:Statement ; up:attribution _:104584 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:30 . _:104617 a rdf:Statement ; up:attribution _:104585 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:648 . _:104618 a rdf:Statement ; up:attribution _:104586 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:436 . _:104619 a rdf:Statement ; up:attribution _:104587 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:104620 a rdf:Statement ; up:attribution _:104588 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:104621 a rdf:Statement ; up:attribution _:104589 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:104622 a rdf:Statement ; up:attribution _:104590 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004820 . _:104623 a rdf:Statement ; up:attribution _:104591 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006426 . _:104624 a rdf:Statement ; up:attribution _:104592 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:104625 a rdf:Statement ; up:source unirule:MF_00253 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:104626 a rdf:Statement ; up:attribution _:104593 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:104627 a rdf:Statement ; up:source unirule:MF_00253 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:104628 a rdf:Statement ; up:attribution _:104594 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:104629 a rdf:Statement ; up:source unirule:MF_00253 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:104630 a rdf:Statement ; up:attribution _:104595 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:104631 a rdf:Statement ; up:source unirule:MF_00253 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:104632 a rdf:Statement ; up:attribution _:104596 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:104633 a rdf:Statement ; up:source unirule:MF_00253 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:104634 a rdf:Statement ; up:attribution _:104597 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:104635 a rdf:Statement ; up:source unirule:MF_00253 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:104636 a rdf:Statement ; up:attribution _:104598 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:104637 a rdf:Statement ; up:source unirule:MF_00253 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:104638 a rdf:Statement ; up:attribution _:104599 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:104639 a rdf:Statement ; up:source unirule:MF_00253 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:104640 a rdf:Statement ; up:attribution _:104600 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:104641 a rdf:Statement ; up:source unirule:MF_00253 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:104642 a rdf:Statement ; up:attribution _:104601 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:104643 a rdf:Statement ; up:source unirule:MF_00253 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:104644 a rdf:Statement ; up:attribution _:104602 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:104645 a rdf:Statement ; up:source unirule:MF_00253 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:104646 a rdf:Statement ; up:attribution _:104603 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:104647 a rdf:Statement ; up:source unirule:MF_00253 ; rdf:subject ?pfs91 ; rdf:predicate up:annotation ; rdf:object ?annotation92 . _:104648 a rdf:Statement ; up:attribution _:104604 ; rdf:subject ?pfs91 ; rdf:predicate up:annotation ; rdf:object ?annotation92 . _:104649 a rdf:Statement ; up:source unirule:MF_00253 ; rdf:subject ?pfs98 ; rdf:predicate up:annotation ; rdf:object ?annotation99 . _:104650 a rdf:Statement ; up:attribution _:104605 ; rdf:subject ?pfs98 ; rdf:predicate up:annotation ; rdf:object ?annotation99 . _:104651 a rdf:Statement ; up:source unirule:MF_00253 ; rdf:subject ?pfs106 ; rdf:predicate up:annotation ; rdf:object ?annotation107 . _:104652 a rdf:Statement ; up:attribution _:104606 ; rdf:subject ?pfs106 ; rdf:predicate up:annotation ; rdf:object ?annotation107 . _:104653 a rdf:Statement ; up:source unirule:MF_00253 ; rdf:subject ?pfs114 ; rdf:predicate up:annotation ; rdf:object ?annotation115 . _:104654 a rdf:Statement ; up:attribution _:104607 ; rdf:subject ?pfs114 ; rdf:predicate up:annotation ; rdf:object ?annotation115 . _:104655 a rdf:Statement ; up:source unirule:MF_00253 ; rdf:subject ?pfs122 ; rdf:predicate up:annotation ; rdf:object ?annotation123 . _:104656 a rdf:Statement ; up:attribution _:104608 ; rdf:subject ?pfs122 ; rdf:predicate up:annotation ; rdf:object ?annotation123 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00253 #Rule MF_00253 Created by:hamap on:2001-06-01 Modified by:ecastro on:2023-06-01 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00253_B . ?thisOrganism rdfs:subClassOf+ taxon:2 . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00253_A . ?thisOrganism rdfs:subClassOf+ taxon:2157 . } BIND(URI(CONCAT(STR(?this), '#MF_00253a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00253a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00253a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00253a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00253a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00253a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionQ57681135 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57681137 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ57681MF_00253_A130 . ?templateMotifSequenceMatchRegionQ57681135 faldo:begin ?templateMotifSequenceMatchBeginQ57681136 . ?templateMotifSequenceMatchBeginQ57681136 faldo:position ?templateMotifSequenceMatchBeginPositionQ57681131 ; faldo:reference isoform:Q57681-1 . ?templateMotifSequenceProfileAlignmentOperationQ57681137 edam:has_input signature:MF_00253_A ; rdf:type edam:operation_0300 . ?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_A141 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ57681MF_00253_A132 . ?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_A140 . ?targetMotifMatchRegionMatchBeginMF_00253_A140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_A133 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00253_A141 edam:has_input signature:MF_00253_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A130, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A130) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A130, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionQ57681131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A132, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A132, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) . BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A133) - 1) AS ?thisPositionOn15) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A130, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A130) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A130, CONCAT('^(?:-*[^-]){', STR(((198 - ?templateMotifSequenceMatchBeginPositionQ57681131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A132, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A132, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) . BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A133) - 1) AS ?thisPositionOn16) . BIND(?this AS ?pfs1t146) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)) = 'RNE')) . BIND(URI(CONCAT(STR(?this), '#MF_00253a11')) AS ?annotation11) . BIND(?this AS ?pfs10) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionQ57681152 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57681154 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ57681MF_00253_A147 . ?templateMotifSequenceMatchRegionQ57681152 faldo:begin ?templateMotifSequenceMatchBeginQ57681153 . ?templateMotifSequenceMatchBeginQ57681153 faldo:position ?templateMotifSequenceMatchBeginPositionQ57681148 ; faldo:reference isoform:Q57681-1 . ?templateMotifSequenceProfileAlignmentOperationQ57681154 edam:has_input signature:MF_00253_A ; rdf:type edam:operation_0300 . ?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_A158 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ57681MF_00253_A149 . ?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_A157 . ?targetMotifMatchRegionMatchBeginMF_00253_A157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_A150 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00253_A158 edam:has_input signature:MF_00253_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A147, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A147) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A147, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionQ57681148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A149, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A149) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A149, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A149) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) . BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A150) - 1) AS ?thisPositionOn22) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A147, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A147) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A147, CONCAT('^(?:-*[^-]){', STR(((211 - ?templateMotifSequenceMatchBeginPositionQ57681148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A149, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A149) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A149, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A149) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) . BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A150) - 1) AS ?thisPositionOn23) . BIND(?this AS ?pfs1t163) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) . FILTER (REGEX('[FILV]R[ARNDCQEGHILKMFPSTWYVBZJUOX]{3)F', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) . BIND(URI(CONCAT(STR(?this), '#MF_00253a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionQ57681169 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57681171 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ57681MF_00253_A164 . ?templateMotifSequenceMatchRegionQ57681169 faldo:begin ?templateMotifSequenceMatchBeginQ57681170 . ?templateMotifSequenceMatchBeginQ57681170 faldo:position ?templateMotifSequenceMatchBeginPositionQ57681165 ; faldo:reference isoform:Q57681-1 . ?templateMotifSequenceProfileAlignmentOperationQ57681171 edam:has_input signature:MF_00253_A ; rdf:type edam:operation_0300 . ?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_A175 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ57681MF_00253_A166 . ?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_A174 . ?targetMotifMatchRegionMatchBeginMF_00253_A174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_A167 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00253_A175 edam:has_input signature:MF_00253_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A164, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A164) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A164, CONCAT('^(?:-*[^-]){', STR(((328 - ?templateMotifSequenceMatchBeginPositionQ57681165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A166, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A166) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A166, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A166) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) . BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A167) - 1) AS ?thisPositionOn29) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A164, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A164) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A164, CONCAT('^(?:-*[^-]){', STR(((329 - ?templateMotifSequenceMatchBeginPositionQ57681165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A166, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A166) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A166, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A166) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) . BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A167) - 1) AS ?thisPositionOn30) . BIND(?this AS ?pfs1t180) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) . FILTER (REGEX('E[CILV]', SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)))) . BIND(URI(CONCAT(STR(?this), '#MF_00253a25')) AS ?annotation25) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch185 faldo:location ?templateMotifSequenceMatchRegionQ57681186 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57681188 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ57681MF_00253_A181 . ?templateMotifSequenceMatchRegionQ57681186 faldo:begin ?templateMotifSequenceMatchBeginQ57681187 . ?templateMotifSequenceMatchBeginQ57681187 faldo:position ?templateMotifSequenceMatchBeginPositionQ57681182 ; faldo:reference isoform:Q57681-1 . ?templateMotifSequenceProfileAlignmentOperationQ57681188 edam:has_input signature:MF_00253_A ; rdf:type edam:operation_0300 . ?targetMotifMatch189 faldo:location ?targetMotifMatchRegionMatch190 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_A192 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ57681MF_00253_A183 . ?targetMotifMatchRegionMatch190 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_A191 . ?targetMotifMatchRegionMatchBeginMF_00253_A191 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_A184 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00253_A192 edam:has_input signature:MF_00253_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A181, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A181) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A181, CONCAT('^(?:-*[^-]){', STR(((451 - ?templateMotifSequenceMatchBeginPositionQ57681182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A183, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A183) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A183, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A183) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) . BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A184) - 1) AS ?thisPositionOn36) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A181, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A181) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A181, CONCAT('^(?:-*[^-]){', STR(((454 - ?templateMotifSequenceMatchBeginPositionQ57681182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A183, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A183) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A183, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A183) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) . BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A184) - 1) AS ?thisPositionOn37) . BIND(?this AS ?pfs1t197) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) . FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)))) . BIND(URI(CONCAT(STR(?this), '#MF_00253a32')) AS ?annotation32) . BIND(?this AS ?pfs31) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionQ57681203 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57681205 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ57681MF_00253_A198 . ?templateMotifSequenceMatchRegionQ57681203 faldo:begin ?templateMotifSequenceMatchBeginQ57681204 . ?templateMotifSequenceMatchBeginQ57681204 faldo:position ?templateMotifSequenceMatchBeginPositionQ57681199 ; faldo:reference isoform:Q57681-1 . ?templateMotifSequenceProfileAlignmentOperationQ57681205 edam:has_input signature:MF_00253_A ; rdf:type edam:operation_0300 . ?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_A209 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ57681MF_00253_A200 . ?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_A208 . ?targetMotifMatchRegionMatchBeginMF_00253_A208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_A201 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00253_A209 edam:has_input signature:MF_00253_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A198, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A198) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A198, CONCAT('^(?:-*[^-]){', STR(((211 - ?templateMotifSequenceMatchBeginPositionQ57681199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A200, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A200) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A200, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A200) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) . BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A201) - 1) AS ?thisPositionOn44) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A198, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A198) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A198, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionQ57681199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A200, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A200) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A200, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A200) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) . BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A201) - 1) AS ?thisPositionOn45) . BIND(?this AS ?pfs1t214) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse41) . FILTER (REGEX('F[ARNDCQEGHILKMFPSTWYVBZJUOX]{3)E', SUBSTR(?thisSequenceValue, ?thisPositionOn44, (?thisPositionOn45 - ?thisPositionOn44)))) . BIND(URI(CONCAT(STR(?this), '#MF_00253a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch219 faldo:location ?templateMotifSequenceMatchRegionQ57681220 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57681222 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ57681MF_00253_A215 . ?templateMotifSequenceMatchRegionQ57681220 faldo:begin ?templateMotifSequenceMatchBeginQ57681221 . ?templateMotifSequenceMatchBeginQ57681221 faldo:position ?templateMotifSequenceMatchBeginPositionQ57681216 ; faldo:reference isoform:Q57681-1 . ?templateMotifSequenceProfileAlignmentOperationQ57681222 edam:has_input signature:MF_00253_A ; rdf:type edam:operation_0300 . ?targetMotifMatch223 faldo:location ?targetMotifMatchRegionMatch224 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_A226 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ57681MF_00253_A217 . ?targetMotifMatchRegionMatch224 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_A225 . ?targetMotifMatchRegionMatchBeginMF_00253_A225 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_A218 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00253_A226 edam:has_input signature:MF_00253_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A215, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A215) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A215, CONCAT('^(?:-*[^-]){', STR(((447 - ?templateMotifSequenceMatchBeginPositionQ57681216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1227) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A217, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A217) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A217, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A217) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), '')))), '[^-]', ''))) AS ?step2228) . BIND(((?step2228 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A218) - 1) AS ?thisPositionOn52) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A215, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A215) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A215, CONCAT('^(?:-*[^-]){', STR(((451 - ?templateMotifSequenceMatchBeginPositionQ57681216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A217, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A217) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A217, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A217) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) . BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A218) - 1) AS ?thisPositionOn53) . BIND(?this AS ?pfs1t231) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse49) . FILTER (REGEX('E[ARNDCQEGHILKMFPSTWYVBZJUOX]{3)G', SUBSTR(?thisSequenceValue, ?thisPositionOn52, (?thisPositionOn53 - ?thisPositionOn52)))) . BIND(URI(CONCAT(STR(?this), '#MF_00253a47')) AS ?annotation47) . BIND(?this AS ?pfs46) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch236 faldo:location ?templateMotifSequenceMatchRegionQ57681237 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57681239 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ57681MF_00253_A232 . ?templateMotifSequenceMatchRegionQ57681237 faldo:begin ?templateMotifSequenceMatchBeginQ57681238 . ?templateMotifSequenceMatchBeginQ57681238 faldo:position ?templateMotifSequenceMatchBeginPositionQ57681233 ; faldo:reference isoform:Q57681-1 . ?templateMotifSequenceProfileAlignmentOperationQ57681239 edam:has_input signature:MF_00253_A ; rdf:type edam:operation_0300 . ?targetMotifMatch240 faldo:location ?targetMotifMatchRegionMatch241 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_A243 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ57681MF_00253_A234 . ?targetMotifMatchRegionMatch241 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_A242 . ?targetMotifMatchRegionMatchBeginMF_00253_A242 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_A235 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00253_A243 edam:has_input signature:MF_00253_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A232, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A232) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A232, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionQ57681233) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1244) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A234, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A234) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A234, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A234) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), '')))), '[^-]', ''))) AS ?step2245) . BIND(((?step2245 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A235) - 1) AS ?thisPositionOn60) . BIND(?thisPositionOn60 AS ?thisPositionOn61) . BIND(?this AS ?pfs1t246) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00253a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch251 faldo:location ?templateMotifSequenceMatchRegionQ57681252 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57681254 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ57681MF_00253_A247 . ?templateMotifSequenceMatchRegionQ57681252 faldo:begin ?templateMotifSequenceMatchBeginQ57681253 . ?templateMotifSequenceMatchBeginQ57681253 faldo:position ?templateMotifSequenceMatchBeginPositionQ57681248 ; faldo:reference isoform:Q57681-1 . ?templateMotifSequenceProfileAlignmentOperationQ57681254 edam:has_input signature:MF_00253_A ; rdf:type edam:operation_0300 . ?targetMotifMatch255 faldo:location ?targetMotifMatchRegionMatch256 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_A258 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ57681MF_00253_A249 . ?targetMotifMatchRegionMatch256 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_A257 . ?targetMotifMatchRegionMatchBeginMF_00253_A257 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_A250 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00253_A258 edam:has_input signature:MF_00253_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A247, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A247) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A247, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionQ57681248) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1259) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A249, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A249) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A249, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A249) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), '')))), '[^-]', ''))) AS ?step2260) . BIND(((?step2260 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A250) - 1) AS ?thisPositionOn68) . BIND(?thisPositionOn68 AS ?thisPositionOn69) . BIND(?this AS ?pfs1t261) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse65) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00253a63')) AS ?annotation63) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch266 faldo:location ?templateMotifSequenceMatchRegionP56206267 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56206269 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56206MF_00253_B262 . ?templateMotifSequenceMatchRegionP56206267 faldo:begin ?templateMotifSequenceMatchBeginP56206268 . ?templateMotifSequenceMatchBeginP56206268 faldo:position ?templateMotifSequenceMatchBeginPositionP56206263 ; faldo:reference isoform:P56206-1 . ?templateMotifSequenceProfileAlignmentOperationP56206269 edam:has_input signature:MF_00253_B ; rdf:type edam:operation_0300 . ?targetMotifMatch270 faldo:location ?targetMotifMatchRegionMatch271 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_B273 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56206MF_00253_B264 . ?targetMotifMatchRegionMatch271 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_B272 . ?targetMotifMatchRegionMatchBeginMF_00253_B272 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_B265 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00253_B273 edam:has_input signature:MF_00253_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B262, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B262) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B262, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionP56206263) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1274) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B264, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B264) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B264, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B264) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), '')))), '[^-]', ''))) AS ?step2275) . BIND(((?step2275 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B265) - 1) AS ?thisPositionOn75) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B262, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B262) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B262, CONCAT('^(?:-*[^-]){', STR(((223 - ?templateMotifSequenceMatchBeginPositionP56206263) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1276) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B264, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B264) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B264, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B264) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), '')))), '[^-]', ''))) AS ?step2277) . BIND(((?step2277 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B265) - 1) AS ?thisPositionOn76) . BIND(?this AS ?pfs2t278) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, (?thisPositionOn76 - ?thisPositionOn75)) = 'RNE')) . BIND(URI(CONCAT(STR(?this), '#MF_00253a71')) AS ?annotation71) . BIND(?this AS ?pfs70) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch283 faldo:location ?templateMotifSequenceMatchRegionP56206284 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56206286 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56206MF_00253_B279 . ?templateMotifSequenceMatchRegionP56206284 faldo:begin ?templateMotifSequenceMatchBeginP56206285 . ?templateMotifSequenceMatchBeginP56206285 faldo:position ?templateMotifSequenceMatchBeginPositionP56206280 ; faldo:reference isoform:P56206-1 . ?templateMotifSequenceProfileAlignmentOperationP56206286 edam:has_input signature:MF_00253_B ; rdf:type edam:operation_0300 . ?targetMotifMatch287 faldo:location ?targetMotifMatchRegionMatch288 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_B290 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56206MF_00253_B281 . ?targetMotifMatchRegionMatch288 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_B289 . ?targetMotifMatchRegionMatchBeginMF_00253_B289 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_B282 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00253_B290 edam:has_input signature:MF_00253_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B279, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B279) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B279, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP56206280) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1291) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B281, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B281) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1291), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B281, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B281) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1291), '}'), '')))), '[^-]', ''))) AS ?step2292) . BIND(((?step2292 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B282) - 1) AS ?thisPositionOn82) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B279, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B279) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B279, CONCAT('^(?:-*[^-]){', STR(((236 - ?templateMotifSequenceMatchBeginPositionP56206280) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1293) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B281, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B281) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B281, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B281) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), '')))), '[^-]', ''))) AS ?step2294) . BIND(((?step2294 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B282) - 1) AS ?thisPositionOn83) . BIND(?this AS ?pfs2t295) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) . FILTER (REGEX('[FILV]R[ARNDCQEGHILKMFPSTWYVBZJUOX]{3)[FL]', SUBSTR(?thisSequenceValue, ?thisPositionOn82, (?thisPositionOn83 - ?thisPositionOn82)))) . BIND(URI(CONCAT(STR(?this), '#MF_00253a78')) AS ?annotation78) . BIND(?this AS ?pfs77) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch300 faldo:location ?templateMotifSequenceMatchRegionP56206301 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56206303 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56206MF_00253_B296 . ?templateMotifSequenceMatchRegionP56206301 faldo:begin ?templateMotifSequenceMatchBeginP56206302 . ?templateMotifSequenceMatchBeginP56206302 faldo:position ?templateMotifSequenceMatchBeginPositionP56206297 ; faldo:reference isoform:P56206-1 . ?templateMotifSequenceProfileAlignmentOperationP56206303 edam:has_input signature:MF_00253_B ; rdf:type edam:operation_0300 . ?targetMotifMatch304 faldo:location ?targetMotifMatchRegionMatch305 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_B307 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56206MF_00253_B298 . ?targetMotifMatchRegionMatch305 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_B306 . ?targetMotifMatchRegionMatchBeginMF_00253_B306 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_B299 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00253_B307 edam:has_input signature:MF_00253_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B296, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B296) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B296, CONCAT('^(?:-*[^-]){', STR(((305 - ?templateMotifSequenceMatchBeginPositionP56206297) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1308) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B298, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B298) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1308), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B298, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B298) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1308), '}'), '')))), '[^-]', ''))) AS ?step2309) . BIND(((?step2309 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B299) - 1) AS ?thisPositionOn89) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B296, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B296) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B296, CONCAT('^(?:-*[^-]){', STR(((306 - ?templateMotifSequenceMatchBeginPositionP56206297) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1310) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B298, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B298) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B298, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B298) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), '')))), '[^-]', ''))) AS ?step2311) . BIND(((?step2311 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B299) - 1) AS ?thisPositionOn90) . BIND(?this AS ?pfs2t312) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) . FILTER (REGEX('E[CILV]', SUBSTR(?thisSequenceValue, ?thisPositionOn89, (?thisPositionOn90 - ?thisPositionOn89)))) . BIND(URI(CONCAT(STR(?this), '#MF_00253a85')) AS ?annotation85) . BIND(?this AS ?pfs84) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch317 faldo:location ?templateMotifSequenceMatchRegionP56206318 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56206320 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56206MF_00253_B313 . ?templateMotifSequenceMatchRegionP56206318 faldo:begin ?templateMotifSequenceMatchBeginP56206319 . ?templateMotifSequenceMatchBeginP56206319 faldo:position ?templateMotifSequenceMatchBeginPositionP56206314 ; faldo:reference isoform:P56206-1 . ?templateMotifSequenceProfileAlignmentOperationP56206320 edam:has_input signature:MF_00253_B ; rdf:type edam:operation_0300 . ?targetMotifMatch321 faldo:location ?targetMotifMatchRegionMatch322 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_B324 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56206MF_00253_B315 . ?targetMotifMatchRegionMatch322 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_B323 . ?targetMotifMatchRegionMatchBeginMF_00253_B323 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_B316 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00253_B324 edam:has_input signature:MF_00253_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B313, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B313) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B313, CONCAT('^(?:-*[^-]){', STR(((364 - ?templateMotifSequenceMatchBeginPositionP56206314) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1325) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B315, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B315) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B315, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B315) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), '')))), '[^-]', ''))) AS ?step2326) . BIND(((?step2326 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B316) - 1) AS ?thisPositionOn96) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B313, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B313) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B313, CONCAT('^(?:-*[^-]){', STR(((367 - ?templateMotifSequenceMatchBeginPositionP56206314) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B315, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B315) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B315, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B315) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) . BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B316) - 1) AS ?thisPositionOn97) . BIND(?this AS ?pfs2t329) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb93) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse94) . FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn96, (?thisPositionOn97 - ?thisPositionOn96)))) . BIND(URI(CONCAT(STR(?this), '#MF_00253a92')) AS ?annotation92) . BIND(?this AS ?pfs91) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch334 faldo:location ?templateMotifSequenceMatchRegionP56206335 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56206337 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56206MF_00253_B330 . ?templateMotifSequenceMatchRegionP56206335 faldo:begin ?templateMotifSequenceMatchBeginP56206336 . ?templateMotifSequenceMatchBeginP56206336 faldo:position ?templateMotifSequenceMatchBeginPositionP56206331 ; faldo:reference isoform:P56206-1 . ?templateMotifSequenceProfileAlignmentOperationP56206337 edam:has_input signature:MF_00253_B ; rdf:type edam:operation_0300 . ?targetMotifMatch338 faldo:location ?targetMotifMatchRegionMatch339 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_B341 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56206MF_00253_B332 . ?targetMotifMatchRegionMatch339 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_B340 . ?targetMotifMatchRegionMatchBeginMF_00253_B340 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_B333 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00253_B341 edam:has_input signature:MF_00253_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B330, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B330) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B330, CONCAT('^(?:-*[^-]){', STR(((236 - ?templateMotifSequenceMatchBeginPositionP56206331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1342) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B332, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B332) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B332, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B332) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), '')))), '[^-]', ''))) AS ?step2343) . BIND(((?step2343 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B333) - 1) AS ?thisPositionOn104) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B330, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B330) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B330, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionP56206331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1344) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B332, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B332) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B332, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B332) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), '')))), '[^-]', ''))) AS ?step2345) . BIND(((?step2345 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B333) - 1) AS ?thisPositionOn105) . BIND(?this AS ?pfs2t346) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfsb100) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfse101) . FILTER (REGEX('[FL][ARNDCQEGHILKMFPSTWYVBZJUOX]Q[ARNDCQEGHILKMFPSTWYVBZJUOX]E', SUBSTR(?thisSequenceValue, ?thisPositionOn104, (?thisPositionOn105 - ?thisPositionOn104)))) . BIND(URI(CONCAT(STR(?this), '#MF_00253a99')) AS ?annotation99) . BIND(?this AS ?pfs98) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch351 faldo:location ?templateMotifSequenceMatchRegionP56206352 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56206354 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56206MF_00253_B347 . ?templateMotifSequenceMatchRegionP56206352 faldo:begin ?templateMotifSequenceMatchBeginP56206353 . ?templateMotifSequenceMatchBeginP56206353 faldo:position ?templateMotifSequenceMatchBeginPositionP56206348 ; faldo:reference isoform:P56206-1 . ?templateMotifSequenceProfileAlignmentOperationP56206354 edam:has_input signature:MF_00253_B ; rdf:type edam:operation_0300 . ?targetMotifMatch355 faldo:location ?targetMotifMatchRegionMatch356 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_B358 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56206MF_00253_B349 . ?targetMotifMatchRegionMatch356 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_B357 . ?targetMotifMatchRegionMatchBeginMF_00253_B357 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_B350 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00253_B358 edam:has_input signature:MF_00253_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B347, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B347) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B347, CONCAT('^(?:-*[^-]){', STR(((360 - ?templateMotifSequenceMatchBeginPositionP56206348) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1359) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B349, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B349) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B349, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B349) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), '')))), '[^-]', ''))) AS ?step2360) . BIND(((?step2360 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B350) - 1) AS ?thisPositionOn112) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B347, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B347) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B347, CONCAT('^(?:-*[^-]){', STR(((364 - ?templateMotifSequenceMatchBeginPositionP56206348) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1361) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B349, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B349) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B349, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B349) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), '')))), '[^-]', ''))) AS ?step2362) . BIND(((?step2362 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B350) - 1) AS ?thisPositionOn113) . BIND(?this AS ?pfs2t363) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb108) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse109) . FILTER (REGEX('E[ARNDCQEGHILKMFPSTWYVBZJUOX]{3)G', SUBSTR(?thisSequenceValue, ?thisPositionOn112, (?thisPositionOn113 - ?thisPositionOn112)))) . BIND(URI(CONCAT(STR(?this), '#MF_00253a107')) AS ?annotation107) . BIND(?this AS ?pfs106) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch368 faldo:location ?templateMotifSequenceMatchRegionP56206369 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56206371 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56206MF_00253_B364 . ?templateMotifSequenceMatchRegionP56206369 faldo:begin ?templateMotifSequenceMatchBeginP56206370 . ?templateMotifSequenceMatchBeginP56206370 faldo:position ?templateMotifSequenceMatchBeginPositionP56206365 ; faldo:reference isoform:P56206-1 . ?templateMotifSequenceProfileAlignmentOperationP56206371 edam:has_input signature:MF_00253_B ; rdf:type edam:operation_0300 . ?targetMotifMatch372 faldo:location ?targetMotifMatchRegionMatch373 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_B375 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56206MF_00253_B366 . ?targetMotifMatchRegionMatch373 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_B374 . ?targetMotifMatchRegionMatchBeginMF_00253_B374 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_B367 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00253_B375 edam:has_input signature:MF_00253_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B364, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B364) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B364, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP56206365) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1376) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B366, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B366) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1376), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B366, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B366) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1376), '}'), '')))), '[^-]', ''))) AS ?step2377) . BIND(((?step2377 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B367) - 1) AS ?thisPositionOn120) . BIND(?thisPositionOn120 AS ?thisPositionOn121) . BIND(?this AS ?pfs2t378) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb116) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse117) . FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00253a115')) AS ?annotation115) . BIND(?this AS ?pfs114) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch383 faldo:location ?templateMotifSequenceMatchRegionP56206384 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56206386 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56206MF_00253_B379 . ?templateMotifSequenceMatchRegionP56206384 faldo:begin ?templateMotifSequenceMatchBeginP56206385 . ?templateMotifSequenceMatchBeginP56206385 faldo:position ?templateMotifSequenceMatchBeginPositionP56206380 ; faldo:reference isoform:P56206-1 . ?templateMotifSequenceProfileAlignmentOperationP56206386 edam:has_input signature:MF_00253_B ; rdf:type edam:operation_0300 . ?targetMotifMatch387 faldo:location ?targetMotifMatchRegionMatch388 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_B390 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56206MF_00253_B381 . ?targetMotifMatchRegionMatch388 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_B389 . ?targetMotifMatchRegionMatchBeginMF_00253_B389 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_B382 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00253_B390 edam:has_input signature:MF_00253_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B379, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B379) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B379, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionP56206380) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1391) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B381, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B381) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1391), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B381, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B381) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1391), '}'), '')))), '[^-]', ''))) AS ?step2392) . BIND(((?step2392 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B382) - 1) AS ?thisPositionOn128) . BIND(?thisPositionOn128 AS ?thisPositionOn129) . BIND(?this AS ?pfs2t393) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfsb124) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfse125) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn128, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00253a123')) AS ?annotation123) . BIND(?this AS ?pfs122) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(?this AS ?case8) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?case9) . } }