CONSTRUCT { _:118223 up:source unirule:MF_00295 . _:118224 up:source unirule:MF_00295 . _:118225 up:source unirule:MF_00295 . _:118226 up:source unirule:MF_00295 . _:118227 up:source unirule:MF_00295 . _:118228 up:source unirule:MF_00295 . _:118229 up:source unirule:MF_00295 . _:118230 up:source unirule:MF_00295 . _:118231 up:source unirule:MF_00295 . _:118232 up:source unirule:MF_00295 . _:118233 up:source unirule:MF_00295 . _:118234 up:source unirule:MF_00295 . _:118235 up:source unirule:MF_00295 . _:118236 up:source unirule:MF_00295 . _:118237 up:source unirule:MF_00295 . _:118238 up:source unirule:MF_00295 . _:118239 up:source unirule:MF_00295 . _:118240 up:source unirule:MF_00295 . _:118241 up:source unirule:MF_00295 . _:118242 up:source unirule:MF_00295 . _:118243 up:source unirule:MF_00295 . _:118244 up:source unirule:MF_00295 . _:118245 up:source unirule:MF_00295 . _:118246 up:source unirule:MF_00295 . _:118247 up:source unirule:MF_00295 . _:118248 up:source unirule:MF_00295 . _:118249 up:source unirule:MF_00295 . _:118250 up:source unirule:MF_00295 . _:118251 up:source unirule:MF_00295 . _:118252 up:source unirule:MF_00295 . _:118253 up:source unirule:MF_00295 . _:118254 up:source unirule:MF_00295 . _:118255 up:source unirule:MF_00295 . _:118256 up:source unirule:MF_00295 . ?this up:annotation ?annotation0 , ?annotation2 ; up:classifiedWith GO:0005737 , keyword:12 , keyword:28 , keyword:808 , keyword:963 . ?annotation0 a up:Subcellular_Location_Annotation . ?annotation0li1 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation2 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the MetA family.' . ?case3 up:alternativeName ?name5 ; up:classifiedWith GO:0004414 , GO:0009086 , keyword:486 ; up:recommendedName ?name4 . ?name4 up:ecName '2.3.1.46' ; up:fullName 'Homoserine O-succinyltransferase' ; up:shortName 'HST' ; rdf:type up:Structured_Name . ?name5 up:fullName 'Homoserine transsuccinylase' ; up:shortName 'HTS' ; rdf:type up:Structured_Name . ?case7 up:alternativeName ?name9 ; up:classifiedWith GO:0008899 , GO:0009086 , keyword:486 ; up:recommendedName ?name8 . ?name8 up:ecName '2.3.1.31' ; up:fullName 'Homoserine O-acetyltransferase' ; up:shortName 'HAT' ; rdf:type up:Structured_Name . ?name9 up:fullName 'Homoserine transacetylase' ; up:shortName 'HTA' ; rdf:type up:Structured_Name . ?case10 up:classifiedWith GO:0006535 , GO:0009001 , keyword:198 ; up:recommendedName ?name11 . ?name11 up:ecName '2.3.1.30' ; up:fullName 'Serine O-acetyltransferase' ; up:shortName 'SAT' ; rdf:type up:Structured_Name . ?case12 up:recommendedName ?name13 . ?name13 up:ecName '2.3.1.-' ; up:fullName 'Probable acyltransferase' ; rdf:type up:Structured_Name . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for acyl-CoA specificity' . ?pfsb16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for acyl-CoA specificity' . ?pfsb22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for acyl-CoA specificity' . ?pfsb28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for acyl-CoA specificity' . ?pfsb34 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for substrate specificity' . ?pfsb40 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfs44 up:annotation ?annotation45 , ?annotation50 , ?annotation55 , ?annotation62 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Acyl-thioester intermediate' . ?pfsb46 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?annotation50 faldo:begin ?pfsb51 ; faldo:end ?pfse52 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor' . ?pfsb51 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfse52 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf ?molecule59 . ?molecule59 rdfs:label 'substrate' . ?annotation62 faldo:begin ?pfsb63 ; faldo:end ?pfse64 ; up:ligand ?ligand65 ; rdf:type up:Binding_Site_Annotation . ?pfsb63 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfse64 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?ligand65 rdfs:subClassOf ?molecule66 . ?molecule66 rdfs:label 'substrate' . ?pfs69 up:annotation ?annotation70 . ?annotation70 faldo:begin ?pfsb71 ; faldo:end ?pfse72 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for substrate specificity' . ?pfsb71 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse72 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?pfs75 up:annotation ?annotation76 . ?annotation76 faldo:begin ?pfsb77 ; faldo:end ?pfse78 ; rdf:type up:Active_Site_Annotation . ?pfsb77 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?pfse78 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?pfs81 up:annotation ?annotation82 . ?annotation82 faldo:begin ?pfsb83 ; faldo:end ?pfse84 ; up:ligand ?ligand85 ; rdf:type up:Binding_Site_Annotation . ?pfsb83 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?pfse84 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . ?ligand85 rdfs:subClassOf ?molecule86 . ?molecule86 rdfs:label 'substrate' . _:118257 a rdf:Statement ; up:attribution _:118223 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:118258 a rdf:Statement ; up:attribution _:118224 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:118259 a rdf:Statement ; up:attribution _:118225 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:118260 a rdf:Statement ; up:attribution _:118226 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:28 . _:118261 a rdf:Statement ; up:attribution _:118227 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:118262 a rdf:Statement ; up:attribution _:118228 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:12 . _:118263 a rdf:Statement ; up:attribution _:118229 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:118264 a rdf:Statement ; up:attribution _:118230 ; rdf:subject ?case3 ; rdf:predicate up:recommendedName ; rdf:object ?name4 . _:118265 a rdf:Statement ; up:attribution _:118231 ; rdf:subject ?case3 ; rdf:predicate up:alternativeName ; rdf:object ?name5 . _:118266 a rdf:Statement ; up:attribution _:118232 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:486 . _:118267 a rdf:Statement ; up:attribution _:118233 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object GO:0004414 . _:118268 a rdf:Statement ; up:attribution _:118234 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009086 . _:118269 a rdf:Statement ; up:attribution _:118235 ; rdf:subject ?case7 ; rdf:predicate up:recommendedName ; rdf:object ?name8 . _:118270 a rdf:Statement ; up:attribution _:118236 ; rdf:subject ?case7 ; rdf:predicate up:alternativeName ; rdf:object ?name9 . _:118271 a rdf:Statement ; up:attribution _:118237 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:486 . _:118272 a rdf:Statement ; up:attribution _:118238 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008899 . _:118273 a rdf:Statement ; up:attribution _:118239 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009086 . _:118274 a rdf:Statement ; up:attribution _:118240 ; rdf:subject ?case10 ; rdf:predicate up:recommendedName ; rdf:object ?name11 . _:118275 a rdf:Statement ; up:attribution _:118241 ; rdf:subject ?case10 ; rdf:predicate up:classifiedWith ; rdf:object keyword:198 . _:118276 a rdf:Statement ; up:attribution _:118242 ; rdf:subject ?case10 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009001 . _:118277 a rdf:Statement ; up:attribution _:118243 ; rdf:subject ?case10 ; rdf:predicate up:classifiedWith ; rdf:object GO:0006535 . _:118278 a rdf:Statement ; up:attribution _:118244 ; rdf:subject ?case12 ; rdf:predicate up:recommendedName ; rdf:object ?name13 . _:118279 a rdf:Statement ; up:source unirule:MF_00295 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:118280 a rdf:Statement ; up:attribution _:118245 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:118281 a rdf:Statement ; up:source unirule:MF_00295 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:118282 a rdf:Statement ; up:attribution _:118246 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:118283 a rdf:Statement ; up:source unirule:MF_00295 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:118284 a rdf:Statement ; up:attribution _:118247 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:118285 a rdf:Statement ; up:source unirule:MF_00295 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:118286 a rdf:Statement ; up:attribution _:118248 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:118287 a rdf:Statement ; up:source unirule:MF_00295 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:118288 a rdf:Statement ; up:attribution _:118249 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:118289 a rdf:Statement ; up:source unirule:MF_00295 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:118290 a rdf:Statement ; up:attribution _:118250 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:118291 a rdf:Statement ; up:source unirule:MF_00295 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:118292 a rdf:Statement ; up:attribution _:118251 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:118293 a rdf:Statement ; up:source unirule:MF_00295 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:118294 a rdf:Statement ; up:attribution _:118252 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:118295 a rdf:Statement ; up:source unirule:MF_00295 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:118296 a rdf:Statement ; up:attribution _:118253 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:118297 a rdf:Statement ; up:source unirule:MF_00295 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . _:118298 a rdf:Statement ; up:attribution _:118254 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . _:118299 a rdf:Statement ; up:source unirule:MF_00295 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:118300 a rdf:Statement ; up:attribution _:118255 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:118301 a rdf:Statement ; up:source unirule:MF_00295 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation82 . _:118302 a rdf:Statement ; up:attribution _:118256 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation82 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00295 #Rule MF_00295 Created by:hamap on:2001-06-01 Modified by:ecastro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00295 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00295a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_00295a2')) AS ?annotation2) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionQ72X4494 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ72X4496 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ72X44MF_0029589 . ?templateMotifSequenceMatchRegionQ72X4494 faldo:begin ?templateMotifSequenceMatchBeginQ72X4495 . ?templateMotifSequenceMatchBeginQ72X4495 faldo:position ?templateMotifSequenceMatchBeginPositionQ72X4490 ; faldo:reference isoform:Q72X44-1 . ?templateMotifSequenceProfileAlignmentOperationQ72X4496 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . ?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00295100 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ72X44MF_0029591 . ?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0029599 . ?targetMotifMatchRegionMatchBeginMF_0029599 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0029592 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00295100 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagP5a) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ72X44MF_0029589, 1, (STRLEN(?templateMotifCigarQ72X44MF_0029589) - STRLEN(REPLACE(?templateMotifCigarQ72X44MF_0029589, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionQ72X4490) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ72X44MF_0029591, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_0029591) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_0029591, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ72X44MF_0029591, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_0029591) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_0029591, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) . BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0029592) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs1t103) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) . FILTER (REGEX('[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00295a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionQ72X44109 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ72X44111 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ72X44MF_00295104 . ?templateMotifSequenceMatchRegionQ72X44109 faldo:begin ?templateMotifSequenceMatchBeginQ72X44110 . ?templateMotifSequenceMatchBeginQ72X44110 faldo:position ?templateMotifSequenceMatchBeginPositionQ72X44105 ; faldo:reference isoform:Q72X44-1 . ?templateMotifSequenceProfileAlignmentOperationQ72X44111 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . ?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00295115 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ72X44MF_00295106 . ?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00295114 . ?targetMotifMatchRegionMatchBeginMF_00295114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00295107 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00295115 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagP5b) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ72X44MF_00295104, 1, (STRLEN(?templateMotifCigarQ72X44MF_00295104) - STRLEN(REPLACE(?templateMotifCigarQ72X44MF_00295104, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionQ72X44105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295106, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295106) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295106, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295106) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) . BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_00295107) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs2t118) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) . FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00295a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionQ72X44124 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ72X44126 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ72X44MF_00295119 . ?templateMotifSequenceMatchRegionQ72X44124 faldo:begin ?templateMotifSequenceMatchBeginQ72X44125 . ?templateMotifSequenceMatchBeginQ72X44125 faldo:position ?templateMotifSequenceMatchBeginPositionQ72X44120 ; faldo:reference isoform:Q72X44-1 . ?templateMotifSequenceProfileAlignmentOperationQ72X44126 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . ?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00295130 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ72X44MF_00295121 . ?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00295129 . ?targetMotifMatchRegionMatchBeginMF_00295129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00295122 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00295130 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagP7) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ72X44MF_00295119, 1, (STRLEN(?templateMotifCigarQ72X44MF_00295119) - STRLEN(REPLACE(?templateMotifCigarQ72X44MF_00295119, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionQ72X44120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295121, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295121) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295121, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295121) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) . BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_00295122) - 1) AS ?thisPositionOn30) . BIND(?thisPositionOn30 AS ?thisPositionOn31) . BIND(?this AS ?pfs3t133) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'L')) . BIND(URI(CONCAT(STR(?this), '#MF_00295a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionQ72X44139 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ72X44141 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ72X44MF_00295134 . ?templateMotifSequenceMatchRegionQ72X44139 faldo:begin ?templateMotifSequenceMatchBeginQ72X44140 . ?templateMotifSequenceMatchBeginQ72X44140 faldo:position ?templateMotifSequenceMatchBeginPositionQ72X44135 ; faldo:reference isoform:Q72X44-1 . ?templateMotifSequenceProfileAlignmentOperationQ72X44141 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . ?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00295145 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ72X44MF_00295136 . ?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00295144 . ?targetMotifMatchRegionMatchBeginMF_00295144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00295137 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00295145 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagP4) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ72X44MF_00295134, 1, (STRLEN(?templateMotifCigarQ72X44MF_00295134) - STRLEN(REPLACE(?templateMotifCigarQ72X44MF_00295134, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionQ72X44135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295136, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295136) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295136, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295136) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) . BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_00295137) - 1) AS ?thisPositionOn36) . BIND(?thisPositionOn36 AS ?thisPositionOn37) . BIND(?this AS ?pfs4t148) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) . FILTER (REGEX('[NE]', SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00295a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionQ72X44154 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ72X44156 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ72X44MF_00295149 . ?templateMotifSequenceMatchRegionQ72X44154 faldo:begin ?templateMotifSequenceMatchBeginQ72X44155 . ?templateMotifSequenceMatchBeginQ72X44155 faldo:position ?templateMotifSequenceMatchBeginPositionQ72X44150 ; faldo:reference isoform:Q72X44-1 . ?templateMotifSequenceProfileAlignmentOperationQ72X44156 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . ?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00295160 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ72X44MF_00295151 . ?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00295159 . ?targetMotifMatchRegionMatchBeginMF_00295159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00295152 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00295160 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagP10b) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ72X44MF_00295149, 1, (STRLEN(?templateMotifCigarQ72X44MF_00295149) - STRLEN(REPLACE(?templateMotifCigarQ72X44MF_00295149, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionQ72X44150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295151, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295151) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295151, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295151) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) . BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_00295152) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs5t163) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_00295a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionQ72X44169 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ72X44171 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ72X44MF_00295164 . ?templateMotifSequenceMatchRegionQ72X44169 faldo:begin ?templateMotifSequenceMatchBeginQ72X44170 . ?templateMotifSequenceMatchBeginQ72X44170 faldo:position ?templateMotifSequenceMatchBeginPositionQ72X44165 ; faldo:reference isoform:Q72X44-1 . ?templateMotifSequenceProfileAlignmentOperationQ72X44171 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . ?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00295175 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ72X44MF_00295166 . ?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00295174 . ?targetMotifMatchRegionMatchBeginMF_00295174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00295167 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00295175 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ72X44MF_00295164, 1, (STRLEN(?templateMotifCigarQ72X44MF_00295164) - STRLEN(REPLACE(?templateMotifCigarQ72X44MF_00295164, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionQ72X44165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295166, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295166) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295166, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295166) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) . BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_00295167) - 1) AS ?thisPositionOn48) . BIND(?thisPositionOn48 AS ?thisPositionOn49) . BIND(?this AS ?pfs6t178) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ72X44MF_00295164, 1, (STRLEN(?templateMotifCigarQ72X44MF_00295164) - STRLEN(REPLACE(?templateMotifCigarQ72X44MF_00295164, CONCAT('^(?:-*[^-]){', STR(((235 - ?templateMotifSequenceMatchBeginPositionQ72X44165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295166, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295166) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295166, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295166) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) . BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_00295167) - 1) AS ?thisPositionOn53) . BIND(?thisPositionOn53 AS ?thisPositionOn54) . BIND(?this AS ?pfs6t181) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse52) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ72X44MF_00295164, 1, (STRLEN(?templateMotifCigarQ72X44MF_00295164) - STRLEN(REPLACE(?templateMotifCigarQ72X44MF_00295164, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionQ72X44165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295166, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295166) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295166, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295166) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) . BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_00295167) - 1) AS ?thisPositionOn60) . BIND(?thisPositionOn60 AS ?thisPositionOn61) . BIND(?this AS ?pfs6t184) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'K')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ72X44MF_00295164, 1, (STRLEN(?templateMotifCigarQ72X44MF_00295164) - STRLEN(REPLACE(?templateMotifCigarQ72X44MF_00295164, CONCAT('^(?:-*[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionQ72X44165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295166, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295166) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295166, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295166) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) . BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_00295167) - 1) AS ?thisPositionOn67) . BIND(?thisPositionOn67 AS ?thisPositionOn68) . BIND(?this AS ?pfs6t187) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse64) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'R')) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionQ72X44193 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ72X44195 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ72X44MF_00295188 . ?templateMotifSequenceMatchRegionQ72X44193 faldo:begin ?templateMotifSequenceMatchBeginQ72X44194 . ?templateMotifSequenceMatchBeginQ72X44194 faldo:position ?templateMotifSequenceMatchBeginPositionQ72X44189 ; faldo:reference isoform:Q72X44-1 . ?templateMotifSequenceProfileAlignmentOperationQ72X44195 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . ?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00295199 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ72X44MF_00295190 . ?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00295198 . ?targetMotifMatchRegionMatchBeginMF_00295198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00295191 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00295199 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagP10a) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ72X44MF_00295188, 1, (STRLEN(?templateMotifCigarQ72X44MF_00295188) - STRLEN(REPLACE(?templateMotifCigarQ72X44MF_00295188, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionQ72X44189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295190, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295190) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295190, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295190) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) . BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_00295191) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs7t202) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb71) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse72) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'A')) . BIND(URI(CONCAT(STR(?this), '#MF_00295a70')) AS ?annotation70) . BIND(?this AS ?pfs69) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch207 faldo:location ?templateMotifSequenceMatchRegionQ72X44208 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ72X44210 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ72X44MF_00295203 . ?templateMotifSequenceMatchRegionQ72X44208 faldo:begin ?templateMotifSequenceMatchBeginQ72X44209 . ?templateMotifSequenceMatchBeginQ72X44209 faldo:position ?templateMotifSequenceMatchBeginPositionQ72X44204 ; faldo:reference isoform:Q72X44-1 . ?templateMotifSequenceProfileAlignmentOperationQ72X44210 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . ?targetMotifMatch211 faldo:location ?targetMotifMatchRegionMatch212 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00295214 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ72X44MF_00295205 . ?targetMotifMatchRegionMatch212 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00295213 . ?targetMotifMatchRegionMatchBeginMF_00295213 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00295206 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00295214 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ72X44MF_00295203, 1, (STRLEN(?templateMotifCigarQ72X44MF_00295203) - STRLEN(REPLACE(?templateMotifCigarQ72X44MF_00295203, CONCAT('^(?:-*[^-]){', STR(((237 - ?templateMotifSequenceMatchBeginPositionQ72X44204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295205, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295205) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295205, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295205) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) . BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_00295206) - 1) AS ?thisPositionOn79) . BIND(?thisPositionOn79 AS ?thisPositionOn80) . BIND(?this AS ?pfs8t217) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb77) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse78) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00295a76')) AS ?annotation76) . BIND(?this AS ?pfs75) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch222 faldo:location ?templateMotifSequenceMatchRegionQ72X44223 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ72X44225 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ72X44MF_00295218 . ?templateMotifSequenceMatchRegionQ72X44223 faldo:begin ?templateMotifSequenceMatchBeginQ72X44224 . ?templateMotifSequenceMatchBeginQ72X44224 faldo:position ?templateMotifSequenceMatchBeginPositionQ72X44219 ; faldo:reference isoform:Q72X44-1 . ?templateMotifSequenceProfileAlignmentOperationQ72X44225 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . ?targetMotifMatch226 faldo:location ?targetMotifMatchRegionMatch227 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00295229 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ72X44MF_00295220 . ?targetMotifMatchRegionMatch227 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00295228 . ?targetMotifMatchRegionMatchBeginMF_00295228 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00295221 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00295229 edam:has_input signature:MF_00295 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ72X44MF_00295218, 1, (STRLEN(?templateMotifCigarQ72X44MF_00295218) - STRLEN(REPLACE(?templateMotifCigarQ72X44MF_00295218, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionQ72X44219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295220, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295220) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ72X44MF_00295220, 1, (STRLEN(?targetMotifMatchCigarQ72X44MF_00295220) - STRLEN(REPLACE(?targetMotifMatchCigarQ72X44MF_00295220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) . BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_00295221) - 1) AS ?thisPositionOn87) . BIND(?thisPositionOn87 AS ?thisPositionOn88) . BIND(?this AS ?pfs8t232) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb83) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse84) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_00295a82')) AS ?annotation82) . BIND(?this AS ?pfs81) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag233) . BIND(URI(CONCAT(STR(?this), '#MF_00295a4')) AS ?name4) . BIND(URI(CONCAT(STR(?this), '#MF_00295a5')) AS ?name5) . } BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagP5a) || BOUND(?tagP4) || BOUND(?tagP7)), ?caseWithTag233, ?UNBOUND_VARIABLE) AS ?case3) . OPTIONAL { ?this a up:Protein . VALUES ?supertaxon234 {taxon:561 taxon:620 taxon:590} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon234 . BIND(?this AS ?case6) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag235) . BIND(URI(CONCAT(STR(?this), '#MF_00295a8')) AS ?name8) . BIND(URI(CONCAT(STR(?this), '#MF_00295a9')) AS ?name9) . } BIND(IF((BOUND(?tagP5a) || BOUND(?tagP10b) || BOUND(?tagP7) || BOUND(?tagP5b) || BOUND(?tagP4) || BOUND(?tagFTGRP_1)), ?caseWithTag235, ?UNBOUND_VARIABLE) AS ?case7) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag236) . BIND(URI(CONCAT(STR(?this), '#MF_00295a11')) AS ?name11) . } BIND(IF((BOUND(?tagP5a) || BOUND(?tagP7) || BOUND(?tagP5b) || BOUND(?tagP10a) || BOUND(?tagP10b) || BOUND(?tagP4) || BOUND(?tagFTGRP_1)), ?caseWithTag236, ?UNBOUND_VARIABLE) AS ?case10) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag237) . BIND(URI(CONCAT(STR(?this), '#MF_00295a13')) AS ?name13) . } BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagP5b) || BOUND(?tagP4) || BOUND(?tagP5a) || BOUND(?tagP7) || BOUND(?tagP7) || BOUND(?tagP4) || BOUND(?tagP10a) || BOUND(?tagP10b)), ?caseWithTag237, ?UNBOUND_VARIABLE) AS ?case12) . }