CONSTRUCT { _:148221 up:source unirule:MF_00379 . _:148222 up:source unirule:MF_00379 . _:148223 up:source unirule:MF_00379 . _:148224 up:source unirule:MF_00379 . _:148225 up:source unirule:MF_00379 . _:148226 up:source unirule:MF_00379 . _:148227 up:source unirule:MF_00379 . _:148228 up:source unirule:MF_00379 . _:148229 up:source unirule:MF_00379 . _:148230 up:source unirule:MF_00379 . _:148231 up:source unirule:MF_00379 . _:148232 up:source unirule:MF_00379 . _:148233 up:source unirule:MF_00379 . _:148234 up:source unirule:MF_00379 . _:148235 up:source unirule:MF_00379 . _:148236 up:source unirule:MF_00379 . _:148237 up:source unirule:MF_00379 . _:148238 up:source unirule:MF_00379 . _:148239 up:source unirule:MF_00379 . _:148240 up:source unirule:MF_00379 . _:148241 up:source unirule:MF_00379 . _:148242 up:source unirule:MF_00379 . _:148243 up:source unirule:MF_00379 . _:148244 up:source unirule:MF_00379 . _:148245 up:source unirule:MF_00379 . _:148246 up:source unirule:MF_00379 . _:148247 up:source unirule:MF_00379 . _:148248 up:source unirule:MF_00379 . _:148249 up:source unirule:MF_00379 . _:148250 up:source unirule:MF_00379 . _:148251 up:source unirule:MF_00379 . _:148252 up:source unirule:MF_00379 . _:148253 up:source unirule:MF_00379 . ?this up:annotation ?annotation0 , ?annotation1 , ?annotation2 ; up:classifiedWith GO:0003924 , GO:0005525 , GO:0006400 , keyword:342 , keyword:378 , keyword:460 , keyword:479 , keyword:547 , keyword:630 , keyword:819 . ?annotation0 a up:Function_Annotation ; rdfs:comment 'Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34.' . ?annotation1 up:cofactor chebi:29103 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 potassium ion per subunit.' . ?annotation2 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.' . ?case3 up:classifiedWith GO:0005737 , keyword:963 ; up:recommendedName ?name4 . ?name4 up:ecName '3.6.-.-' ; up:fullName 'tRNA modification GTPase MnmE' ; rdf:type up:Structured_Name . ?case5 up:classifiedWith GO:0009507 ; up:recommendedName ?name6 . ?name6 up:ecName '3.6.-.-' ; up:fullName 'Probable tRNA modification GTPase MnmE' ; rdf:type up:Structured_Name . ?pfs7 up:annotation ?annotation8 . ?annotation8 faldo:begin ?pfsb9 ; faldo:end ?pfse10 ; up:ligand ?ligand11 ; rdf:type up:Binding_Site_Annotation . ?pfsb9 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfse10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?ligand11 rdfs:subClassOf chebi:37565 . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; up:ligand ?ligand18 ; rdf:type up:Binding_Site_Annotation . ?pfsb16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?ligand18 rdfs:subClassOf chebi:37565 . ?pfs21 up:annotation ?annotation22 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; up:ligand ?ligand25 ; rdf:type up:Binding_Site_Annotation . ?pfsb23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?ligand25 rdfs:subClassOf chebi:37565 . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; up:ligand ?ligand32 ; rdf:type up:Binding_Site_Annotation . ?pfsb30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand32 rdfs:subClassOf chebi:37565 . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; up:ligand ?ligand39 ; rdf:type up:Binding_Site_Annotation . ?pfsb37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?ligand39 rdfs:subClassOf chebi:37565 . ?pfs42 up:annotation ?annotation43 . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; up:ligand ?ligand46 ; rdf:type up:Binding_Site_Annotation . ?pfsb44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?ligand46 rdfs:subClassOf chebi:18420 . ?pfs49 up:annotation ?annotation50 . ?annotation50 faldo:begin ?pfsb51 ; faldo:end ?pfse52 ; up:ligand ?ligand53 ; rdf:type up:Binding_Site_Annotation . ?pfsb51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfse52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?ligand53 rdfs:subClassOf chebi:18420 . ?pfs56 up:annotation ?annotation57 , ?annotation63 , ?annotation69 , ?annotation75 . ?annotation57 faldo:begin ?pfsb58 ; faldo:end ?pfse59 ; up:ligand ?ligand60 ; rdf:type up:Binding_Site_Annotation . ?pfsb58 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?pfse59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?ligand60 rdfs:subClassOf chebi:57457 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; up:ligand ?ligand66 ; rdf:type up:Binding_Site_Annotation . ?pfsb64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?ligand66 rdfs:subClassOf chebi:57457 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; up:ligand ?ligand72 ; rdf:type up:Binding_Site_Annotation . ?pfsb70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?ligand72 rdfs:subClassOf chebi:57457 . ?annotation75 faldo:begin ?pfsb76 ; faldo:end ?pfse77 ; up:ligand ?ligand78 ; rdf:type up:Binding_Site_Annotation . ?pfsb76 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?pfse77 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?ligand78 rdfs:subClassOf chebi:57457 . ?pfs81 up:annotation ?annotation82 , ?annotation88 , ?annotation94 , ?annotation100 . ?annotation82 faldo:begin ?pfsb83 ; faldo:end ?pfse84 ; up:ligand ?ligand85 ; rdf:type up:Binding_Site_Annotation . ?pfsb83 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . ?pfse84 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?ligand85 rdfs:subClassOf chebi:29103 . ?annotation88 faldo:begin ?pfsb89 ; faldo:end ?pfse90 ; up:ligand ?ligand91 ; rdf:type up:Binding_Site_Annotation . ?pfsb89 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?pfse90 faldo:position ?thisPositionOn93 ; rdf:type faldo:ExactPosition . ?ligand91 rdfs:subClassOf chebi:29103 . ?annotation94 faldo:begin ?pfsb95 ; faldo:end ?pfse96 ; up:ligand ?ligand97 ; rdf:type up:Binding_Site_Annotation . ?pfsb95 faldo:position ?thisPositionOn98 ; rdf:type faldo:ExactPosition . ?pfse96 faldo:position ?thisPositionOn99 ; rdf:type faldo:ExactPosition . ?ligand97 rdfs:subClassOf chebi:29103 . ?annotation100 faldo:begin ?pfsb101 ; faldo:end ?pfse102 ; up:ligand ?ligand103 ; rdf:type up:Binding_Site_Annotation . ?pfsb101 faldo:position ?thisPositionOn104 ; rdf:type faldo:ExactPosition . ?pfse102 faldo:position ?thisPositionOn105 ; rdf:type faldo:ExactPosition . ?ligand103 rdfs:subClassOf chebi:29103 . _:148254 a rdf:Statement ; up:attribution _:148221 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:148255 a rdf:Statement ; up:attribution _:148222 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:148256 a rdf:Statement ; up:attribution _:148223 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:148257 a rdf:Statement ; up:attribution _:148224 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:342 . _:148258 a rdf:Statement ; up:attribution _:148225 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:148259 a rdf:Statement ; up:attribution _:148226 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:148260 a rdf:Statement ; up:attribution _:148227 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:148261 a rdf:Statement ; up:attribution _:148228 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:148262 a rdf:Statement ; up:attribution _:148229 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:630 . _:148263 a rdf:Statement ; up:attribution _:148230 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:819 . _:148264 a rdf:Statement ; up:attribution _:148231 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005525 . _:148265 a rdf:Statement ; up:attribution _:148232 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003924 . _:148266 a rdf:Statement ; up:attribution _:148233 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006400 . _:148267 a rdf:Statement ; up:attribution _:148234 ; rdf:subject ?case3 ; rdf:predicate up:recommendedName ; rdf:object ?name4 . _:148268 a rdf:Statement ; up:attribution _:148235 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:148269 a rdf:Statement ; up:attribution _:148236 ; rdf:subject ?case3 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:148270 a rdf:Statement ; up:attribution _:148237 ; rdf:subject ?case5 ; rdf:predicate up:recommendedName ; rdf:object ?name6 . _:148271 a rdf:Statement ; up:attribution _:148238 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009507 . _:148272 a rdf:Statement ; up:source unirule:MF_00379 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:148273 a rdf:Statement ; up:attribution _:148239 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:148274 a rdf:Statement ; up:source unirule:MF_00379 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:148275 a rdf:Statement ; up:attribution _:148240 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:148276 a rdf:Statement ; up:source unirule:MF_00379 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:148277 a rdf:Statement ; up:attribution _:148241 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:148278 a rdf:Statement ; up:source unirule:MF_00379 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:148279 a rdf:Statement ; up:attribution _:148242 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:148280 a rdf:Statement ; up:source unirule:MF_00379 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:148281 a rdf:Statement ; up:attribution _:148243 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:148282 a rdf:Statement ; up:source unirule:MF_00379 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:148283 a rdf:Statement ; up:attribution _:148244 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:148284 a rdf:Statement ; up:source unirule:MF_00379 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:148285 a rdf:Statement ; up:attribution _:148245 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:148286 a rdf:Statement ; up:source unirule:MF_00379 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:148287 a rdf:Statement ; up:attribution _:148246 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:148288 a rdf:Statement ; up:source unirule:MF_00379 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:148289 a rdf:Statement ; up:attribution _:148247 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:148290 a rdf:Statement ; up:source unirule:MF_00379 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:148291 a rdf:Statement ; up:attribution _:148248 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:148292 a rdf:Statement ; up:source unirule:MF_00379 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:148293 a rdf:Statement ; up:attribution _:148249 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:148294 a rdf:Statement ; up:source unirule:MF_00379 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation82 . _:148295 a rdf:Statement ; up:attribution _:148250 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation82 . _:148296 a rdf:Statement ; up:source unirule:MF_00379 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:148297 a rdf:Statement ; up:attribution _:148251 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:148298 a rdf:Statement ; up:source unirule:MF_00379 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:148299 a rdf:Statement ; up:attribution _:148252 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:148300 a rdf:Statement ; up:source unirule:MF_00379 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation100 . _:148301 a rdf:Statement ; up:attribution _:148253 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation100 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00379 #Rule MF_00379 Created by:hamap on:2001-06-01 Modified by:ecastro on:2023-06-01 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00379 . ?thisOrganism rdfs:subClassOf+ taxon:2 . } UNION { ?this rdfs:seeAlso signature:MF_00379 . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } } BIND(URI(CONCAT(STR(?this), '#MF_00379a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_00379a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_00379a2')) AS ?annotation2) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch110 faldo:location ?templateMotifSequenceMatchRegionP25522111 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP25522113 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP25522MF_00379106 . ?templateMotifSequenceMatchRegionP25522111 faldo:begin ?templateMotifSequenceMatchBeginP25522112 . ?templateMotifSequenceMatchBeginP25522112 faldo:position ?templateMotifSequenceMatchBeginPositionP25522107 ; faldo:reference isoform:P25522-1 . ?templateMotifSequenceProfileAlignmentOperationP25522113 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . ?targetMotifMatch114 faldo:location ?targetMotifMatchRegionMatch115 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00379117 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP25522MF_00379108 . ?targetMotifMatchRegionMatch115 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00379116 . ?targetMotifMatchRegionMatchBeginMF_00379116 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00379109 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00379117 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379106, 1, (STRLEN(?templateMotifCigarP25522MF_00379106) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379106, CONCAT('^(?:-*[^-]){', STR(((226 - ?templateMotifSequenceMatchBeginPositionP25522107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379108, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379108) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379108, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379108) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) . BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_00379109) - 1) AS ?thisPositionOn12) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379106, 1, (STRLEN(?templateMotifCigarP25522MF_00379106) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379106, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP25522107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379108, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379108) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379108, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379108) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) . BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_00379109) - 1) AS ?thisPositionOn13) . BIND(?this AS ?pfs1t122) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) . FILTER (REGEX('N[VSAT]GKS[TSQR]', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) . BIND(URI(CONCAT(STR(?this), '#MF_00379a8')) AS ?annotation8) . BIND(?this AS ?pfs7) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionP25522128 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP25522130 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP25522MF_00379123 . ?templateMotifSequenceMatchRegionP25522128 faldo:begin ?templateMotifSequenceMatchBeginP25522129 . ?templateMotifSequenceMatchBeginP25522129 faldo:position ?templateMotifSequenceMatchBeginPositionP25522124 ; faldo:reference isoform:P25522-1 . ?templateMotifSequenceProfileAlignmentOperationP25522130 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . ?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00379134 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP25522MF_00379125 . ?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00379133 . ?targetMotifMatchRegionMatchBeginMF_00379133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00379126 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00379134 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379123, 1, (STRLEN(?templateMotifCigarP25522MF_00379123) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379123, CONCAT('^(?:-*[^-]){', STR(((245 - ?templateMotifSequenceMatchBeginPositionP25522124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379125, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379125) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379125, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379125) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) . BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_00379126) - 1) AS ?thisPositionOn19) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379123, 1, (STRLEN(?templateMotifCigarP25522MF_00379123) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379123, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP25522124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379125, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379125) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379125, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379125) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) . BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_00379126) - 1) AS ?thisPositionOn20) . BIND(?this AS ?pfs1t139) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) . FILTER (REGEX('[TSMAD][ARNDCQEGHILKMFPSTWYVBZJUOX]{3)G[TSR]T', SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)))) . BIND(URI(CONCAT(STR(?this), '#MF_00379a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionP25522145 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP25522147 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP25522MF_00379140 . ?templateMotifSequenceMatchRegionP25522145 faldo:begin ?templateMotifSequenceMatchBeginP25522146 . ?templateMotifSequenceMatchBeginP25522146 faldo:position ?templateMotifSequenceMatchBeginPositionP25522141 ; faldo:reference isoform:P25522-1 . ?templateMotifSequenceProfileAlignmentOperationP25522147 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . ?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00379151 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP25522MF_00379142 . ?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00379150 . ?targetMotifMatchRegionMatchBeginMF_00379150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00379143 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00379151 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379140, 1, (STRLEN(?templateMotifCigarP25522MF_00379140) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379140, CONCAT('^(?:-*[^-]){', STR(((270 - ?templateMotifSequenceMatchBeginPositionP25522141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379142, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379142) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379142, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379142) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) . BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_00379143) - 1) AS ?thisPositionOn26) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379140, 1, (STRLEN(?templateMotifCigarP25522MF_00379140) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379140, CONCAT('^(?:-*[^-]){', STR(((273 - ?templateMotifSequenceMatchBeginPositionP25522141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379142, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379142) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379142, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379142) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) . BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_00379143) - 1) AS ?thisPositionOn27) . BIND(?this AS ?pfs1t156) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) . FILTER (REGEX('D[TS]AG', SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)))) . BIND(URI(CONCAT(STR(?this), '#MF_00379a22')) AS ?annotation22) . BIND(?this AS ?pfs21) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch161 faldo:location ?templateMotifSequenceMatchRegionP25522162 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP25522164 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP25522MF_00379157 . ?templateMotifSequenceMatchRegionP25522162 faldo:begin ?templateMotifSequenceMatchBeginP25522163 . ?templateMotifSequenceMatchBeginP25522163 faldo:position ?templateMotifSequenceMatchBeginPositionP25522158 ; faldo:reference isoform:P25522-1 . ?templateMotifSequenceProfileAlignmentOperationP25522164 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . ?targetMotifMatch165 faldo:location ?targetMotifMatchRegionMatch166 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00379168 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP25522MF_00379159 . ?targetMotifMatchRegionMatch166 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00379167 . ?targetMotifMatchRegionMatchBeginMF_00379167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00379160 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00379168 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379157, 1, (STRLEN(?templateMotifCigarP25522MF_00379157) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379157, CONCAT('^(?:-*[^-]){', STR(((335 - ?templateMotifSequenceMatchBeginPositionP25522158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379159, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379159) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379159, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379159) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) . BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_00379160) - 1) AS ?thisPositionOn33) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379157, 1, (STRLEN(?templateMotifCigarP25522MF_00379157) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379157, CONCAT('^(?:-*[^-]){', STR(((338 - ?templateMotifSequenceMatchBeginPositionP25522158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379159, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379159) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379159, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379159) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) . BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_00379160) - 1) AS ?thisPositionOn34) . BIND(?this AS ?pfs1t173) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)) = 'NKAD')) . BIND(URI(CONCAT(STR(?this), '#MF_00379a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionP25522179 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP25522181 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP25522MF_00379174 . ?templateMotifSequenceMatchRegionP25522179 faldo:begin ?templateMotifSequenceMatchBeginP25522180 . ?templateMotifSequenceMatchBeginP25522180 faldo:position ?templateMotifSequenceMatchBeginPositionP25522175 ; faldo:reference isoform:P25522-1 . ?templateMotifSequenceProfileAlignmentOperationP25522181 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . ?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00379185 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP25522MF_00379176 . ?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00379184 . ?targetMotifMatchRegionMatchBeginMF_00379184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00379177 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00379185 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379174, 1, (STRLEN(?templateMotifCigarP25522MF_00379174) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379174, CONCAT('^(?:-*[^-]){', STR(((358 - ?templateMotifSequenceMatchBeginPositionP25522175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379176, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379176) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379176, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379176) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) . BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_00379177) - 1) AS ?thisPositionOn40) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379174, 1, (STRLEN(?templateMotifCigarP25522MF_00379174) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379174, CONCAT('^(?:-*[^-]){', STR(((360 - ?templateMotifSequenceMatchBeginPositionP25522175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379176, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379176) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379176, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379176) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) . BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_00379177) - 1) AS ?thisPositionOn41) . BIND(?this AS ?pfs1t190) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, (?thisPositionOn41 - ?thisPositionOn40)) = 'SAR')) . BIND(URI(CONCAT(STR(?this), '#MF_00379a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionP25522196 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP25522198 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP25522MF_00379191 . ?templateMotifSequenceMatchRegionP25522196 faldo:begin ?templateMotifSequenceMatchBeginP25522197 . ?templateMotifSequenceMatchBeginP25522197 faldo:position ?templateMotifSequenceMatchBeginPositionP25522192 ; faldo:reference isoform:P25522-1 . ?templateMotifSequenceProfileAlignmentOperationP25522198 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . ?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00379202 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP25522MF_00379193 . ?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00379201 . ?targetMotifMatchRegionMatchBeginMF_00379201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00379194 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00379202 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379191, 1, (STRLEN(?templateMotifCigarP25522MF_00379191) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379191, CONCAT('^(?:-*[^-]){', STR(((230 - ?templateMotifSequenceMatchBeginPositionP25522192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379193, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379193) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379193, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379193) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) . BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_00379194) - 1) AS ?thisPositionOn47) . BIND(?thisPositionOn47 AS ?thisPositionOn48) . BIND(?this AS ?pfs1t205) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_00379a43')) AS ?annotation43) . BIND(?this AS ?pfs42) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch210 faldo:location ?templateMotifSequenceMatchRegionP25522211 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP25522213 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP25522MF_00379206 . ?templateMotifSequenceMatchRegionP25522211 faldo:begin ?templateMotifSequenceMatchBeginP25522212 . ?templateMotifSequenceMatchBeginP25522212 faldo:position ?templateMotifSequenceMatchBeginPositionP25522207 ; faldo:reference isoform:P25522-1 . ?templateMotifSequenceProfileAlignmentOperationP25522213 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . ?targetMotifMatch214 faldo:location ?targetMotifMatchRegionMatch215 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00379217 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP25522MF_00379208 . ?targetMotifMatchRegionMatch215 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00379216 . ?targetMotifMatchRegionMatchBeginMF_00379216 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00379209 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00379217 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379206, 1, (STRLEN(?templateMotifCigarP25522MF_00379206) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379206, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP25522207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379208, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379208) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379208, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379208) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) . BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_00379209) - 1) AS ?thisPositionOn54) . BIND(?thisPositionOn54 AS ?thisPositionOn55) . BIND(?this AS ?pfs1t220) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_00379a50')) AS ?annotation50) . BIND(?this AS ?pfs49) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch225 faldo:location ?templateMotifSequenceMatchRegionP25522226 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP25522228 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP25522MF_00379221 . ?templateMotifSequenceMatchRegionP25522226 faldo:begin ?templateMotifSequenceMatchBeginP25522227 . ?templateMotifSequenceMatchBeginP25522227 faldo:position ?templateMotifSequenceMatchBeginPositionP25522222 ; faldo:reference isoform:P25522-1 . ?templateMotifSequenceProfileAlignmentOperationP25522228 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . ?targetMotifMatch229 faldo:location ?targetMotifMatchRegionMatch230 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00379232 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP25522MF_00379223 . ?targetMotifMatchRegionMatch230 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00379231 . ?targetMotifMatchRegionMatchBeginMF_00379231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00379224 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00379232 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379221, 1, (STRLEN(?templateMotifCigarP25522MF_00379221) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379221, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP25522222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379223, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379223) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379223, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379223) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) . BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_00379224) - 1) AS ?thisPositionOn61) . BIND(?thisPositionOn61 AS ?thisPositionOn62) . BIND(?this AS ?pfs2t235) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) . FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379221, 1, (STRLEN(?templateMotifCigarP25522MF_00379221) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379221, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP25522222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379223, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379223) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379223, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379223) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) . BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_00379224) - 1) AS ?thisPositionOn67) . BIND(?thisPositionOn67 AS ?thisPositionOn68) . BIND(?this AS ?pfs2t238) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'E')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379221, 1, (STRLEN(?templateMotifCigarP25522MF_00379221) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379221, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionP25522222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1239) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379223, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379223) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379223, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379223) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), '')))), '[^-]', ''))) AS ?step2240) . BIND(((?step2240 + ?targetMotifMatchRegionMatchBeginPositionMF_00379224) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs2t241) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) . FILTER (REGEX('[RKVM]', SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379221, 1, (STRLEN(?templateMotifCigarP25522MF_00379221) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379221, CONCAT('^(?:-*[^-]){', STR(((454 - ?templateMotifSequenceMatchBeginPositionP25522222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1242) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379223, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379223) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379223, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379223) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), '')))), '[^-]', ''))) AS ?step2243) . BIND(((?step2243 + ?targetMotifMatchRegionMatchBeginPositionMF_00379224) - 1) AS ?thisPositionOn79) . BIND(?thisPositionOn79 AS ?thisPositionOn80) . BIND(?this AS ?pfs2t244) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'K')) . BIND(?this AS ?pfs56) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch249 faldo:location ?templateMotifSequenceMatchRegionP25522250 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP25522252 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP25522MF_00379245 . ?templateMotifSequenceMatchRegionP25522250 faldo:begin ?templateMotifSequenceMatchBeginP25522251 . ?templateMotifSequenceMatchBeginP25522251 faldo:position ?templateMotifSequenceMatchBeginPositionP25522246 ; faldo:reference isoform:P25522-1 . ?templateMotifSequenceProfileAlignmentOperationP25522252 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . ?targetMotifMatch253 faldo:location ?targetMotifMatchRegionMatch254 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00379256 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP25522MF_00379247 . ?targetMotifMatchRegionMatch254 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00379255 . ?targetMotifMatchRegionMatchBeginMF_00379255 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00379248 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00379256 edam:has_input signature:MF_00379 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379245, 1, (STRLEN(?templateMotifCigarP25522MF_00379245) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379245, CONCAT('^(?:-*[^-]){', STR(((226 - ?templateMotifSequenceMatchBeginPositionP25522246) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1257) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379247, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379247) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379247, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379247) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), '')))), '[^-]', ''))) AS ?step2258) . BIND(((?step2258 + ?targetMotifMatchRegionMatchBeginPositionMF_00379248) - 1) AS ?thisPositionOn86) . BIND(?thisPositionOn86 AS ?thisPositionOn87) . BIND(?this AS ?pfs3t259) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb83) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse84) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'N')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379245, 1, (STRLEN(?templateMotifCigarP25522MF_00379245) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379245, CONCAT('^(?:-*[^-]){', STR(((245 - ?templateMotifSequenceMatchBeginPositionP25522246) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1260) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379247, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379247) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379247, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379247) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), '')))), '[^-]', ''))) AS ?step2261) . BIND(((?step2261 + ?targetMotifMatchRegionMatchBeginPositionMF_00379248) - 1) AS ?thisPositionOn92) . BIND(?thisPositionOn92 AS ?thisPositionOn93) . BIND(?this AS ?pfs3t262) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb89) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse90) . FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379245, 1, (STRLEN(?templateMotifCigarP25522MF_00379245) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379245, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP25522246) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1263) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379247, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379247) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379247, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379247) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), '')))), '[^-]', ''))) AS ?step2264) . BIND(((?step2264 + ?targetMotifMatchRegionMatchBeginPositionMF_00379248) - 1) AS ?thisPositionOn98) . BIND(?thisPositionOn98 AS ?thisPositionOn99) . BIND(?this AS ?pfs3t265) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) . FILTER (REGEX('[IVL]', SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1))) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP25522MF_00379245, 1, (STRLEN(?templateMotifCigarP25522MF_00379245) - STRLEN(REPLACE(?templateMotifCigarP25522MF_00379245, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionP25522246) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1266) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP25522MF_00379247, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379247) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1266), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP25522MF_00379247, 1, (STRLEN(?targetMotifMatchCigarP25522MF_00379247) - STRLEN(REPLACE(?targetMotifMatchCigarP25522MF_00379247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1266), '}'), '')))), '[^-]', ''))) AS ?step2267) . BIND(((?step2267 + ?targetMotifMatchRegionMatchBeginPositionMF_00379248) - 1) AS ?thisPositionOn104) . BIND(?thisPositionOn104 AS ?thisPositionOn105) . BIND(?this AS ?pfs3t268) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfsb101) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfse102) . FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn104, 1))) . BIND(?this AS ?pfs81) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?case3) . BIND(URI(CONCAT(STR(?this), '#MF_00379a4')) AS ?name4) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2 . })) . BIND(?this AS ?case5) . BIND(URI(CONCAT(STR(?this), '#MF_00379a6')) AS ?name6) . } }