CONSTRUCT { _:170208 up:source unirule:MF_00435 . _:170209 up:source unirule:MF_00435 . _:170210 up:source unirule:MF_00435 . _:170211 up:source unirule:MF_00435 . _:170212 up:source unirule:MF_00435 . _:170213 up:source unirule:MF_00435 . _:170214 up:source unirule:MF_00435 . _:170215 up:source unirule:MF_00435 . _:170216 up:source unirule:MF_00435 . _:170217 up:source unirule:MF_00435 . _:170218 up:source unirule:MF_00435 . _:170219 up:source unirule:MF_00435 . _:170220 up:source unirule:MF_00435 . _:170221 up:source unirule:MF_00435 . _:170222 up:source unirule:MF_00435 . _:170223 up:source unirule:MF_00435 . _:170224 up:source unirule:MF_00435 . _:170225 up:source unirule:MF_00435 . _:170226 up:source unirule:MF_00435 . _:170227 up:source unirule:MF_00435 . _:170228 up:source unirule:MF_00435 . _:170229 up:source unirule:MF_00435 . _:170230 up:source unirule:MF_00435 . _:170231 up:source unirule:MF_00435 . _:170232 up:source unirule:MF_00435 . _:170233 up:source unirule:MF_00435 . _:170234 up:source unirule:MF_00435 . _:170235 up:source unirule:MF_00435 . _:170236 up:source unirule:MF_00435 . _:170237 up:source unirule:MF_00435 . _:170238 up:source unirule:MF_00435 . _:170239 up:source unirule:MF_00435 . _:170240 up:source unirule:MF_00435 . _:170241 up:source unirule:MF_00435 . ?this up:alternativeName ?name1 , ?name2 ; up:annotation ?annotation4 , ?annotation5 , ?annotation7 , ?annotation9 , ?annotation10 , ?annotation11 , ?annotation12 ; up:classifiedWith GO:0000287 , GO:0004455 , GO:0009097 , GO:0009099 , keyword:100 , keyword:28 , keyword:460 , keyword:479 , keyword:521 , keyword:560 ; up:recommendedName ?name0 . ?name0 up:ecName '1.1.1.86' ; up:fullName 'Ketol-acid reductoisomerase (NADP(+))' ; up:shortName 'KARI' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Acetohydroxy-acid isomeroreductase' ; up:shortName 'AHIR' ; rdf:type up:Structured_Name . ?name2 up:fullName 'Alpha-keto-beta-hydroxylacyl reductoisomerase' ; rdf:type up:Structured_Name . ?gene3 skos:prefLabel 'ilvC' . ?annotation4 a up:Function_Annotation ; rdfs:comment 'Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.' . ?annotation5 up:activity ?activity6 ; rdf:type up:Catalytic_Activity_Annotation . ?activity6 up:catalyticActivity <http://rdf.rhea-db.org/22068>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.1.1.86>. ?annotation7 up:activity ?activity8 ; rdf:type up:Catalytic_Activity_Annotation . ?activity8 up:catalyticActivity <http://rdf.rhea-db.org/13493>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.1.1.86>. ?annotation9 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 2 magnesium ions per subunit' . ?annotation10 a up:Pathway_Annotation ; rdfs:comment 'Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 2/4.' . ?annotation11 a up:Pathway_Annotation ; rdfs:comment 'Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 2/4.' . ?annotation12 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the ketol-acid reductoisomerase family.' . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; up:ligand ?ligand17 ; rdf:type up:Binding_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?ligand17 rdfs:subClassOf chebi:58349 . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:58349 . ?pfs27 up:annotation ?annotation28 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; rdf:type up:Active_Site_Annotation . ?pfsb29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfs33 up:annotation ?annotation34 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; up:ligand ?ligand37 ; rdf:type up:Binding_Site_Annotation . ?pfsb35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?ligand37 rdfs:subClassOf chebi:18420 . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation . ?pfsb42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf chebi:18420 . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation . ?pfsb49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf chebi:18420 . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf chebi:18420 . ?pfs61 up:annotation ?annotation62 . ?annotation62 faldo:begin ?pfsb63 ; faldo:end ?pfse64 ; up:ligand ?ligand65 ; rdf:type up:Binding_Site_Annotation . ?pfsb63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?ligand65 rdfs:subClassOf chebi:18420 . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; up:ligand ?ligand72 ; rdf:type up:Binding_Site_Annotation . ?pfsb70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?ligand72 rdfs:subClassOf chebi:58349 . ?pfs75 up:annotation ?annotation76 . ?annotation76 faldo:begin ?pfsb77 ; faldo:end ?pfse78 ; up:ligand ?ligand79 ; rdf:type up:Binding_Site_Annotation . ?pfsb77 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?pfse78 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . ?ligand79 rdfs:subClassOf chebi:58349 . ?pfs82 up:annotation ?annotation83 . ?annotation83 faldo:begin ?pfsb84 ; faldo:end ?pfse85 ; up:ligand ?ligand86 ; rdf:type up:Binding_Site_Annotation . ?pfsb84 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?pfse85 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . ?ligand86 rdfs:subClassOf chebi:58349 . ?pfs89 up:annotation ?annotation90 . ?annotation90 faldo:begin ?pfsb91 ; faldo:end ?pfse92 ; up:ligand ?ligand93 ; rdf:type up:Binding_Site_Annotation . ?pfsb91 faldo:position ?thisPositionOn94 ; rdf:type faldo:ExactPosition . ?pfse92 faldo:position ?thisPositionOn95 ; rdf:type faldo:ExactPosition . ?ligand93 rdfs:subClassOf chebi:58349 . ?pfs96 up:annotation ?annotation97 . ?annotation97 faldo:begin ?pfsb98 ; faldo:end ?pfse99 ; up:ligand ?ligand100 ; rdf:type up:Binding_Site_Annotation . ?pfsb98 faldo:position ?thisPositionOn102 ; rdf:type faldo:ExactPosition . ?pfse99 faldo:position ?thisPositionOn103 ; rdf:type faldo:ExactPosition . ?ligand100 rdfs:subClassOf ?molecule101 . ?molecule101 rdfs:label 'substrate' . _:170242 a rdf:Statement ; up:attribution _:170208 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:170243 a rdf:Statement ; up:attribution _:170209 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:170244 a rdf:Statement ; up:attribution _:170210 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:170245 a rdf:Statement ; up:attribution _:170211 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:170246 a rdf:Statement ; up:attribution _:170212 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:170247 a rdf:Statement ; up:attribution _:170213 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:170248 a rdf:Statement ; up:attribution _:170214 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:170249 a rdf:Statement ; up:attribution _:170215 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:170250 a rdf:Statement ; up:attribution _:170216 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:170251 a rdf:Statement ; up:attribution _:170217 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:170252 a rdf:Statement ; up:attribution _:170218 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:170253 a rdf:Statement ; up:attribution _:170219 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:170254 a rdf:Statement ; up:attribution _:170220 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:28 . _:170255 a rdf:Statement ; up:attribution _:170221 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:100 . _:170256 a rdf:Statement ; up:attribution _:170222 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:170257 a rdf:Statement ; up:attribution _:170223 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:170258 a rdf:Statement ; up:attribution _:170224 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:521 . _:170259 a rdf:Statement ; up:attribution _:170225 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:170260 a rdf:Statement ; up:attribution _:170226 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004455 . _:170261 a rdf:Statement ; up:attribution _:170227 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009097 . _:170262 a rdf:Statement ; up:attribution _:170228 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009099 . _:170263 a rdf:Statement ; up:source unirule:MF_00435 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:170264 a rdf:Statement ; up:attribution _:170229 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:170265 a rdf:Statement ; up:source unirule:MF_00435 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:170266 a rdf:Statement ; up:attribution _:170230 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:170267 a rdf:Statement ; up:source unirule:MF_00435 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:170268 a rdf:Statement ; up:attribution _:170231 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:170269 a rdf:Statement ; up:source unirule:MF_00435 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:170270 a rdf:Statement ; up:attribution _:170232 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:170271 a rdf:Statement ; up:source unirule:MF_00435 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:170272 a rdf:Statement ; up:attribution _:170233 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:170273 a rdf:Statement ; up:source unirule:MF_00435 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:170274 a rdf:Statement ; up:attribution _:170234 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:170275 a rdf:Statement ; up:source unirule:MF_00435 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:170276 a rdf:Statement ; up:attribution _:170235 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:170277 a rdf:Statement ; up:source unirule:MF_00435 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:170278 a rdf:Statement ; up:attribution _:170236 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:170279 a rdf:Statement ; up:source unirule:MF_00435 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:170280 a rdf:Statement ; up:attribution _:170237 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:170281 a rdf:Statement ; up:source unirule:MF_00435 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:170282 a rdf:Statement ; up:attribution _:170238 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:170283 a rdf:Statement ; up:source unirule:MF_00435 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:170284 a rdf:Statement ; up:attribution _:170239 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:170285 a rdf:Statement ; up:source unirule:MF_00435 ; rdf:subject ?pfs89 ; rdf:predicate up:annotation ; rdf:object ?annotation90 . _:170286 a rdf:Statement ; up:attribution _:170240 ; rdf:subject ?pfs89 ; rdf:predicate up:annotation ; rdf:object ?annotation90 . _:170287 a rdf:Statement ; up:source unirule:MF_00435 ; rdf:subject ?pfs96 ; rdf:predicate up:annotation ; rdf:object ?annotation97 . _:170288 a rdf:Statement ; up:attribution _:170241 ; rdf:subject ?pfs96 ; rdf:predicate up:annotation ; rdf:object ?annotation97 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00435 #Rule MF_00435 Created by:rivoire on:2001-07-12 Modified by:ecastro on:2023-06-01 VALUES ?supertaxon104 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00435 . ?thisOrganism rdfs:subClassOf+ ?supertaxon104 . BIND(URI(CONCAT(STR(?this), '#MF_00435a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00435a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00435a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_00435a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00435a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00435a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00435a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_00435a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_00435a11')) AS ?annotation11) . BIND(URI(CONCAT(STR(?this), '#MF_00435a12')) AS ?annotation12) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP05793110 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05793112 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05793MF_00435105 . ?templateMotifSequenceMatchRegionP05793110 faldo:begin ?templateMotifSequenceMatchBeginP05793111 . ?templateMotifSequenceMatchBeginP05793111 faldo:position ?templateMotifSequenceMatchBeginPositionP05793106 ; faldo:reference isoform:P05793-1 . ?templateMotifSequenceProfileAlignmentOperationP05793112 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . ?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00435116 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05793MF_00435107 . ?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00435115 . ?targetMotifMatchRegionMatchBeginMF_00435115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00435108 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00435116 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05793MF_00435105, 1, (STRLEN(?templateMotifCigarP05793MF_00435105) - STRLEN(REPLACE(?templateMotifCigarP05793MF_00435105, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP05793106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05793MF_00435107, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435107) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05793MF_00435107, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435107) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) . BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_00435108) - 1) AS ?thisPositionOn18) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05793MF_00435105, 1, (STRLEN(?templateMotifCigarP05793MF_00435105) - STRLEN(REPLACE(?templateMotifCigarP05793MF_00435105, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP05793106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05793MF_00435107, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435107) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05793MF_00435107, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435107) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) . BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_00435108) - 1) AS ?thisPositionOn19) . BIND(?this AS ?pfs1t121) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) . FILTER (REGEX('[CYF]G[ARNDCQEGHILKMFPSTWYVBZJUOX]Q', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) . BIND(URI(CONCAT(STR(?this), '#MF_00435a14')) AS ?annotation14) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionP05793127 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05793129 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05793MF_00435122 . ?templateMotifSequenceMatchRegionP05793127 faldo:begin ?templateMotifSequenceMatchBeginP05793128 . ?templateMotifSequenceMatchBeginP05793128 faldo:position ?templateMotifSequenceMatchBeginPositionP05793123 ; faldo:reference isoform:P05793-1 . ?templateMotifSequenceProfileAlignmentOperationP05793129 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . ?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00435133 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05793MF_00435124 . ?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00435132 . ?targetMotifMatchRegionMatchBeginMF_00435132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00435125 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00435133 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05793MF_00435122, 1, (STRLEN(?templateMotifCigarP05793MF_00435122) - STRLEN(REPLACE(?templateMotifCigarP05793MF_00435122, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionP05793123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05793MF_00435124, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435124) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05793MF_00435124, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435124) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) . BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_00435125) - 1) AS ?thisPositionOn25) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05793MF_00435122, 1, (STRLEN(?templateMotifCigarP05793MF_00435122) - STRLEN(REPLACE(?templateMotifCigarP05793MF_00435122, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionP05793123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05793MF_00435124, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435124) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05793MF_00435124, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435124) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) . BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_00435125) - 1) AS ?thisPositionOn26) . BIND(?this AS ?pfs1t138) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER (REGEX('D[ARNDCQEGHILKMFPSTWYVBZJUOX]{1,2)Q', SUBSTR(?thisSequenceValue, ?thisPositionOn25, (?thisPositionOn26 - ?thisPositionOn25)))) . BIND(URI(CONCAT(STR(?this), '#MF_00435a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionP05793144 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05793146 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05793MF_00435139 . ?templateMotifSequenceMatchRegionP05793144 faldo:begin ?templateMotifSequenceMatchBeginP05793145 . ?templateMotifSequenceMatchBeginP05793145 faldo:position ?templateMotifSequenceMatchBeginPositionP05793140 ; faldo:reference isoform:P05793-1 . ?templateMotifSequenceProfileAlignmentOperationP05793146 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . ?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00435150 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05793MF_00435141 . ?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00435149 . ?targetMotifMatchRegionMatchBeginMF_00435149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00435142 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00435150 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05793MF_00435139, 1, (STRLEN(?templateMotifCigarP05793MF_00435139) - STRLEN(REPLACE(?templateMotifCigarP05793MF_00435139, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP05793140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05793MF_00435141, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435141) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05793MF_00435141, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435141) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) . BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_00435142) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs1t153) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00435a28')) AS ?annotation28) . BIND(?this AS ?pfs27) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP05793159 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05793161 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05793MF_00435154 . ?templateMotifSequenceMatchRegionP05793159 faldo:begin ?templateMotifSequenceMatchBeginP05793160 . ?templateMotifSequenceMatchBeginP05793160 faldo:position ?templateMotifSequenceMatchBeginPositionP05793155 ; faldo:reference isoform:P05793-1 . ?templateMotifSequenceProfileAlignmentOperationP05793161 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . ?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00435165 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05793MF_00435156 . ?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00435164 . ?targetMotifMatchRegionMatchBeginMF_00435164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00435157 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00435165 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05793MF_00435154, 1, (STRLEN(?templateMotifCigarP05793MF_00435154) - STRLEN(REPLACE(?templateMotifCigarP05793MF_00435154, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP05793155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05793MF_00435156, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435156) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05793MF_00435156, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435156) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) . BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_00435157) - 1) AS ?thisPositionOn38) . BIND(?thisPositionOn38 AS ?thisPositionOn39) . BIND(?this AS ?pfs1t168) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00435a34')) AS ?annotation34) . BIND(?this AS ?pfs33) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionP05793174 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05793176 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05793MF_00435169 . ?templateMotifSequenceMatchRegionP05793174 faldo:begin ?templateMotifSequenceMatchBeginP05793175 . ?templateMotifSequenceMatchBeginP05793175 faldo:position ?templateMotifSequenceMatchBeginPositionP05793170 ; faldo:reference isoform:P05793-1 . ?templateMotifSequenceProfileAlignmentOperationP05793176 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . ?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00435180 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05793MF_00435171 . ?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00435179 . ?targetMotifMatchRegionMatchBeginMF_00435179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00435172 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00435180 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05793MF_00435169, 1, (STRLEN(?templateMotifCigarP05793MF_00435169) - STRLEN(REPLACE(?templateMotifCigarP05793MF_00435169, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP05793170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05793MF_00435171, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435171) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05793MF_00435171, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435171) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) . BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_00435172) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs1t183) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00435a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionP05793189 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05793191 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05793MF_00435184 . ?templateMotifSequenceMatchRegionP05793189 faldo:begin ?templateMotifSequenceMatchBeginP05793190 . ?templateMotifSequenceMatchBeginP05793190 faldo:position ?templateMotifSequenceMatchBeginPositionP05793185 ; faldo:reference isoform:P05793-1 . ?templateMotifSequenceProfileAlignmentOperationP05793191 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . ?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00435195 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05793MF_00435186 . ?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00435194 . ?targetMotifMatchRegionMatchBeginMF_00435194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00435187 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00435195 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05793MF_00435184, 1, (STRLEN(?templateMotifCigarP05793MF_00435184) - STRLEN(REPLACE(?templateMotifCigarP05793MF_00435184, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionP05793185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05793MF_00435186, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435186) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05793MF_00435186, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435186) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) . BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_00435187) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs1t198) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00435a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch203 faldo:location ?templateMotifSequenceMatchRegionP05793204 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05793206 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05793MF_00435199 . ?templateMotifSequenceMatchRegionP05793204 faldo:begin ?templateMotifSequenceMatchBeginP05793205 . ?templateMotifSequenceMatchBeginP05793205 faldo:position ?templateMotifSequenceMatchBeginPositionP05793200 ; faldo:reference isoform:P05793-1 . ?templateMotifSequenceProfileAlignmentOperationP05793206 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . ?targetMotifMatch207 faldo:location ?targetMotifMatchRegionMatch208 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00435210 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05793MF_00435201 . ?targetMotifMatchRegionMatch208 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00435209 . ?targetMotifMatchRegionMatchBeginMF_00435209 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00435202 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00435210 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05793MF_00435199, 1, (STRLEN(?templateMotifCigarP05793MF_00435199) - STRLEN(REPLACE(?templateMotifCigarP05793MF_00435199, CONCAT('^(?:-*[^-]){', STR(((389 - ?templateMotifSequenceMatchBeginPositionP05793200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05793MF_00435201, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435201) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05793MF_00435201, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435201) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) . BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_00435202) - 1) AS ?thisPositionOn59) . BIND(?thisPositionOn59 AS ?thisPositionOn60) . BIND(?this AS ?pfs1t213) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00435a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch218 faldo:location ?templateMotifSequenceMatchRegionP05793219 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05793221 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05793MF_00435214 . ?templateMotifSequenceMatchRegionP05793219 faldo:begin ?templateMotifSequenceMatchBeginP05793220 . ?templateMotifSequenceMatchBeginP05793220 faldo:position ?templateMotifSequenceMatchBeginPositionP05793215 ; faldo:reference isoform:P05793-1 . ?templateMotifSequenceProfileAlignmentOperationP05793221 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . ?targetMotifMatch222 faldo:location ?targetMotifMatchRegionMatch223 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00435225 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05793MF_00435216 . ?targetMotifMatchRegionMatch223 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00435224 . ?targetMotifMatchRegionMatchBeginMF_00435224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00435217 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00435225 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05793MF_00435214, 1, (STRLEN(?templateMotifCigarP05793MF_00435214) - STRLEN(REPLACE(?templateMotifCigarP05793MF_00435214, CONCAT('^(?:-*[^-]){', STR(((393 - ?templateMotifSequenceMatchBeginPositionP05793215) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05793MF_00435216, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435216) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05793MF_00435216, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435216) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) . BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_00435217) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs1t228) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00435a62')) AS ?annotation62) . BIND(?this AS ?pfs61) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionP05793234 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05793236 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05793MF_00435229 . ?templateMotifSequenceMatchRegionP05793234 faldo:begin ?templateMotifSequenceMatchBeginP05793235 . ?templateMotifSequenceMatchBeginP05793235 faldo:position ?templateMotifSequenceMatchBeginPositionP05793230 ; faldo:reference isoform:P05793-1 . ?templateMotifSequenceProfileAlignmentOperationP05793236 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . ?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00435240 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05793MF_00435231 . ?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00435239 . ?targetMotifMatchRegionMatchBeginMF_00435239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00435232 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00435240 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05793MF_00435229, 1, (STRLEN(?templateMotifCigarP05793MF_00435229) - STRLEN(REPLACE(?templateMotifCigarP05793MF_00435229, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP05793230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05793MF_00435231, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435231) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05793MF_00435231, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435231) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) . BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_00435232) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs1t243) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) . FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00435a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionP05793249 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05793251 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05793MF_00435244 . ?templateMotifSequenceMatchRegionP05793249 faldo:begin ?templateMotifSequenceMatchBeginP05793250 . ?templateMotifSequenceMatchBeginP05793250 faldo:position ?templateMotifSequenceMatchBeginPositionP05793245 ; faldo:reference isoform:P05793-1 . ?templateMotifSequenceProfileAlignmentOperationP05793251 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . ?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00435255 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05793MF_00435246 . ?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00435254 . ?targetMotifMatchRegionMatchBeginMF_00435254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00435247 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00435255 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05793MF_00435244, 1, (STRLEN(?templateMotifCigarP05793MF_00435244) - STRLEN(REPLACE(?templateMotifCigarP05793MF_00435244, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionP05793245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05793MF_00435246, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435246) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05793MF_00435246, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435246) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) . BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_00435247) - 1) AS ?thisPositionOn80) . BIND(?thisPositionOn80 AS ?thisPositionOn81) . BIND(?this AS ?pfs1t258) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) . FILTER (REGEX('[RS]', SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00435a76')) AS ?annotation76) . BIND(?this AS ?pfs75) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch263 faldo:location ?templateMotifSequenceMatchRegionP05793264 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05793266 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05793MF_00435259 . ?templateMotifSequenceMatchRegionP05793264 faldo:begin ?templateMotifSequenceMatchBeginP05793265 . ?templateMotifSequenceMatchBeginP05793265 faldo:position ?templateMotifSequenceMatchBeginPositionP05793260 ; faldo:reference isoform:P05793-1 . ?templateMotifSequenceProfileAlignmentOperationP05793266 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . ?targetMotifMatch267 faldo:location ?targetMotifMatchRegionMatch268 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00435270 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05793MF_00435261 . ?targetMotifMatchRegionMatch268 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00435269 . ?targetMotifMatchRegionMatchBeginMF_00435269 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00435262 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00435270 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05793MF_00435259, 1, (STRLEN(?templateMotifCigarP05793MF_00435259) - STRLEN(REPLACE(?templateMotifCigarP05793MF_00435259, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionP05793260) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1271) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05793MF_00435261, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435261) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05793MF_00435261, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435261) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), '')))), '[^-]', ''))) AS ?step2272) . BIND(((?step2272 + ?targetMotifMatchRegionMatchBeginPositionMF_00435262) - 1) AS ?thisPositionOn87) . BIND(?thisPositionOn87 AS ?thisPositionOn88) . BIND(?this AS ?pfs1t273) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00435a83')) AS ?annotation83) . BIND(?this AS ?pfs82) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch278 faldo:location ?templateMotifSequenceMatchRegionP05793279 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05793281 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05793MF_00435274 . ?templateMotifSequenceMatchRegionP05793279 faldo:begin ?templateMotifSequenceMatchBeginP05793280 . ?templateMotifSequenceMatchBeginP05793280 faldo:position ?templateMotifSequenceMatchBeginPositionP05793275 ; faldo:reference isoform:P05793-1 . ?templateMotifSequenceProfileAlignmentOperationP05793281 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . ?targetMotifMatch282 faldo:location ?targetMotifMatchRegionMatch283 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00435285 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05793MF_00435276 . ?targetMotifMatchRegionMatch283 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00435284 . ?targetMotifMatchRegionMatchBeginMF_00435284 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00435277 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00435285 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05793MF_00435274, 1, (STRLEN(?templateMotifCigarP05793MF_00435274) - STRLEN(REPLACE(?templateMotifCigarP05793MF_00435274, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionP05793275) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1286) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05793MF_00435276, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435276) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05793MF_00435276, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435276) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), '')))), '[^-]', ''))) AS ?step2287) . BIND(((?step2287 + ?targetMotifMatchRegionMatchBeginPositionMF_00435277) - 1) AS ?thisPositionOn94) . BIND(?thisPositionOn94 AS ?thisPositionOn95) . BIND(?this AS ?pfs1t288) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb91) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse92) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_00435a90')) AS ?annotation90) . BIND(?this AS ?pfs89) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch293 faldo:location ?templateMotifSequenceMatchRegionP05793294 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP05793296 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP05793MF_00435289 . ?templateMotifSequenceMatchRegionP05793294 faldo:begin ?templateMotifSequenceMatchBeginP05793295 . ?templateMotifSequenceMatchBeginP05793295 faldo:position ?templateMotifSequenceMatchBeginPositionP05793290 ; faldo:reference isoform:P05793-1 . ?templateMotifSequenceProfileAlignmentOperationP05793296 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . ?targetMotifMatch297 faldo:location ?targetMotifMatchRegionMatch298 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00435300 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP05793MF_00435291 . ?targetMotifMatchRegionMatch298 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00435299 . ?targetMotifMatchRegionMatchBeginMF_00435299 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00435292 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00435300 edam:has_input signature:MF_00435 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP05793MF_00435289, 1, (STRLEN(?templateMotifCigarP05793MF_00435289) - STRLEN(REPLACE(?templateMotifCigarP05793MF_00435289, CONCAT('^(?:-*[^-]){', STR(((414 - ?templateMotifSequenceMatchBeginPositionP05793290) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1301) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP05793MF_00435291, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435291) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP05793MF_00435291, 1, (STRLEN(?targetMotifMatchCigarP05793MF_00435291) - STRLEN(REPLACE(?targetMotifMatchCigarP05793MF_00435291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), '')))), '[^-]', ''))) AS ?step2302) . BIND(((?step2302 + ?targetMotifMatchRegionMatchBeginPositionMF_00435292) - 1) AS ?thisPositionOn102) . BIND(?thisPositionOn102 AS ?thisPositionOn103) . BIND(?this AS ?pfs1t303) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb98) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse99) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_00435a97')) AS ?annotation97) . BIND(?this AS ?pfs96) . } }