CONSTRUCT { _:180312 up:source unirule:MF_00453 . _:180313 up:source unirule:MF_00453 . _:180314 up:source unirule:MF_00453 . _:180315 up:source unirule:MF_00453 . _:180316 up:source unirule:MF_00453 . _:180317 up:source unirule:MF_00453 . _:180318 up:source unirule:MF_00453 . _:180319 up:source unirule:MF_00453 . _:180320 up:source unirule:MF_00453 . _:180321 up:source unirule:MF_00453 . _:180322 up:source unirule:MF_00453 . _:180323 up:source unirule:MF_00453 . _:180324 up:source unirule:MF_00453 . _:180325 up:source unirule:MF_00453 . _:180326 up:source unirule:MF_00453 . _:180327 up:source unirule:MF_00453 . _:180328 up:source unirule:MF_00453 . _:180329 up:source unirule:MF_00453 . _:180330 up:source unirule:MF_00453 . _:180331 up:source unirule:MF_00453 . _:180332 up:source unirule:MF_00453 . _:180333 up:source unirule:MF_00453 . _:180334 up:source unirule:MF_00453 . _:180335 up:source unirule:MF_00453 . _:180336 up:source unirule:MF_00453 . _:180337 up:source unirule:MF_00453 . _:180338 up:source unirule:MF_00453 . _:180339 up:source unirule:MF_00453 . _:180340 up:source unirule:MF_00453 . _:180341 up:source unirule:MF_00453 . _:180342 up:source unirule:MF_00453 . _:180343 up:source unirule:MF_00453 . _:180344 up:source unirule:MF_00453 . _:180345 up:source unirule:MF_00453 . _:180346 up:source unirule:MF_00453 . _:180347 up:source unirule:MF_00453 . _:180348 up:source unirule:MF_00453 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation6 , ?annotation7 , ?annotation9 ; up:classifiedWith GO:0004612 , GO:0005524 , GO:0005737 , GO:0006094 , keyword:210 , keyword:312 , keyword:456 , keyword:464 , keyword:479 , keyword:547 , keyword:67 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '4.1.1.49' ; up:fullName 'Phosphoenolpyruvate carboxykinase (ATP)' ; up:shortName 'PEP carboxykinase' , 'PEPCK' , 'PCK' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'pckA' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/18617>; up:enzymeClass <http://purl.uniprot.org/enzyme/4.1.1.49>. ?annotation5 up:cofactor chebi:29035 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 Mn(2+) ion per subunit.' . ?annotation6 a up:Pathway_Annotation ; rdfs:comment 'Carbohydrate biosynthesis; gluconeogenesis.' . ?annotation7 a up:Subcellular_Location_Annotation . ?annotation7li8 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation9 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.' . ?case11 up:classifiedWith keyword:7 . ?pfs12 up:annotation ?annotation13 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfs18 up:annotation ?annotation19 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfs24 up:annotation ?annotation25 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; up:ligand ?ligand28 ; rdf:type up:Binding_Site_Annotation . ?pfsb26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?ligand28 rdfs:subClassOf chebi:30616 . ?pfs31 up:annotation ?annotation32 . ?annotation32 faldo:begin ?pfsb33 ; faldo:end ?pfse34 ; up:ligand ?ligand35 ; rdf:type up:Binding_Site_Annotation . ?pfsb33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?ligand35 rdfs:subClassOf chebi:30616 . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; up:ligand ?ligand42 ; rdf:type up:Binding_Site_Annotation . ?pfsb40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?ligand42 rdfs:subClassOf chebi:29035 . ?pfs45 up:annotation ?annotation46 . ?annotation46 faldo:begin ?pfsb47 ; faldo:end ?pfse48 ; up:ligand ?ligand49 ; rdf:type up:Binding_Site_Annotation . ?pfsb47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfse48 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?ligand49 rdfs:subClassOf chebi:29035 . ?pfs52 up:annotation ?annotation53 . ?annotation53 faldo:begin ?pfsb54 ; faldo:end ?pfse55 ; up:ligand ?ligand56 ; rdf:type up:Binding_Site_Annotation . ?pfsb54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfse55 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?ligand56 rdfs:subClassOf chebi:29035 . ?pfs59 up:annotation ?annotation60 . ?annotation60 faldo:begin ?pfsb61 ; faldo:end ?pfse62 ; up:ligand ?ligand63 ; rdf:type up:Binding_Site_Annotation . ?pfsb61 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?pfse62 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?ligand63 rdfs:subClassOf ?molecule64 . ?molecule64 rdfs:label 'substrate' . ?pfs67 up:annotation ?annotation68 . ?annotation68 faldo:begin ?pfsb69 ; faldo:end ?pfse70 ; up:ligand ?ligand71 ; rdf:type up:Binding_Site_Annotation . ?pfsb69 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse70 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?ligand71 rdfs:subClassOf ?molecule72 . ?molecule72 rdfs:label 'substrate' . ?pfs75 up:annotation ?annotation76 . ?annotation76 faldo:begin ?pfsb77 ; faldo:end ?pfse78 ; up:ligand ?ligand79 ; rdf:type up:Binding_Site_Annotation . ?pfsb77 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?pfse78 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . ?ligand79 rdfs:subClassOf chebi:30616 . ?pfs82 up:annotation ?annotation83 . ?annotation83 faldo:begin ?pfsb84 ; faldo:end ?pfse85 ; up:ligand ?ligand86 ; rdf:type up:Binding_Site_Annotation . ?pfsb84 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . ?pfse85 faldo:position ?thisPositionOn89 ; rdf:type faldo:ExactPosition . ?ligand86 rdfs:subClassOf ?molecule87 . ?molecule87 rdfs:label 'substrate' . ?pfs90 up:annotation ?annotation91 . ?annotation91 faldo:begin ?pfsb92 ; faldo:end ?pfse93 ; up:ligand ?ligand94 ; rdf:type up:Binding_Site_Annotation . ?pfsb92 faldo:position ?thisPositionOn95 ; rdf:type faldo:ExactPosition . ?pfse93 faldo:position ?thisPositionOn96 ; rdf:type faldo:ExactPosition . ?ligand94 rdfs:subClassOf chebi:30616 . ?pfs97 up:annotation ?annotation98 . ?annotation98 faldo:begin ?pfsb99 ; faldo:end ?pfse100 ; up:ligand ?ligand101 ; rdf:type up:Binding_Site_Annotation . ?pfsb99 faldo:position ?thisPositionOn102 ; rdf:type faldo:ExactPosition . ?pfse100 faldo:position ?thisPositionOn103 ; rdf:type faldo:ExactPosition . ?ligand101 rdfs:subClassOf chebi:30616 . ?pfs104 up:annotation ?annotation105 . ?annotation105 faldo:begin ?pfsb106 ; faldo:end ?pfse107 ; up:ligand ?ligand108 ; rdf:type up:Binding_Site_Annotation . ?pfsb106 faldo:position ?thisPositionOn109 ; rdf:type faldo:ExactPosition . ?pfse107 faldo:position ?thisPositionOn110 ; rdf:type faldo:ExactPosition . ?ligand108 rdfs:subClassOf chebi:30616 . ?pfs111 up:annotation ?annotation112 . ?annotation112 faldo:begin ?pfsb113 ; faldo:end ?pfse114 ; up:ligand ?ligand115 ; rdf:type up:Binding_Site_Annotation . ?pfsb113 faldo:position ?thisPositionOn117 ; rdf:type faldo:ExactPosition . ?pfse114 faldo:position ?thisPositionOn118 ; rdf:type faldo:ExactPosition . ?ligand115 rdfs:subClassOf ?molecule116 . ?molecule116 rdfs:label 'substrate' . ?pfs119 up:annotation ?annotation120 . ?annotation120 faldo:begin ?pfsb121 ; faldo:end ?pfse122 ; up:ligand ?ligand123 ; rdf:type up:Binding_Site_Annotation . ?pfsb121 faldo:position ?thisPositionOn124 ; rdf:type faldo:ExactPosition . ?pfse122 faldo:position ?thisPositionOn125 ; rdf:type faldo:ExactPosition . ?ligand123 rdfs:subClassOf chebi:30616 . _:180349 a rdf:Statement ; up:attribution _:180312 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:180350 a rdf:Statement ; up:attribution _:180313 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:180351 a rdf:Statement ; up:attribution _:180314 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:180352 a rdf:Statement ; up:attribution _:180315 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:180353 a rdf:Statement ; up:attribution _:180316 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:180354 a rdf:Statement ; up:attribution _:180317 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:180355 a rdf:Statement ; up:attribution _:180318 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:180356 a rdf:Statement ; up:attribution _:180319 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:180357 a rdf:Statement ; up:attribution _:180320 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:180358 a rdf:Statement ; up:attribution _:180321 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:312 . _:180359 a rdf:Statement ; up:attribution _:180322 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:456 . _:180360 a rdf:Statement ; up:attribution _:180323 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:210 . _:180361 a rdf:Statement ; up:attribution _:180324 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:180362 a rdf:Statement ; up:attribution _:180325 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:180363 a rdf:Statement ; up:attribution _:180326 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:180364 a rdf:Statement ; up:attribution _:180327 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:464 . _:180365 a rdf:Statement ; up:attribution _:180328 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:180366 a rdf:Statement ; up:attribution _:180329 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004612 . _:180367 a rdf:Statement ; up:attribution _:180330 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006094 . _:180368 a rdf:Statement ; up:attribution _:180331 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:180369 a rdf:Statement ; up:attribution _:180332 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object keyword:7 . _:180370 a rdf:Statement ; up:source unirule:MF_00453 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:180371 a rdf:Statement ; up:attribution _:180333 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:180372 a rdf:Statement ; up:source unirule:MF_00453 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:180373 a rdf:Statement ; up:attribution _:180334 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:180374 a rdf:Statement ; up:source unirule:MF_00453 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:180375 a rdf:Statement ; up:attribution _:180335 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:180376 a rdf:Statement ; up:source unirule:MF_00453 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:180377 a rdf:Statement ; up:attribution _:180336 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:180378 a rdf:Statement ; up:source unirule:MF_00453 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:180379 a rdf:Statement ; up:attribution _:180337 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:180380 a rdf:Statement ; up:source unirule:MF_00453 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:180381 a rdf:Statement ; up:attribution _:180338 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:180382 a rdf:Statement ; up:source unirule:MF_00453 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:180383 a rdf:Statement ; up:attribution _:180339 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:180384 a rdf:Statement ; up:source unirule:MF_00453 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:180385 a rdf:Statement ; up:attribution _:180340 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:180386 a rdf:Statement ; up:source unirule:MF_00453 ; rdf:subject ?pfs67 ; rdf:predicate up:annotation ; rdf:object ?annotation68 . _:180387 a rdf:Statement ; up:attribution _:180341 ; rdf:subject ?pfs67 ; rdf:predicate up:annotation ; rdf:object ?annotation68 . _:180388 a rdf:Statement ; up:source unirule:MF_00453 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:180389 a rdf:Statement ; up:attribution _:180342 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:180390 a rdf:Statement ; up:source unirule:MF_00453 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:180391 a rdf:Statement ; up:attribution _:180343 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:180392 a rdf:Statement ; up:source unirule:MF_00453 ; rdf:subject ?pfs90 ; rdf:predicate up:annotation ; rdf:object ?annotation91 . _:180393 a rdf:Statement ; up:attribution _:180344 ; rdf:subject ?pfs90 ; rdf:predicate up:annotation ; rdf:object ?annotation91 . _:180394 a rdf:Statement ; up:source unirule:MF_00453 ; rdf:subject ?pfs97 ; rdf:predicate up:annotation ; rdf:object ?annotation98 . _:180395 a rdf:Statement ; up:attribution _:180345 ; rdf:subject ?pfs97 ; rdf:predicate up:annotation ; rdf:object ?annotation98 . _:180396 a rdf:Statement ; up:source unirule:MF_00453 ; rdf:subject ?pfs104 ; rdf:predicate up:annotation ; rdf:object ?annotation105 . _:180397 a rdf:Statement ; up:attribution _:180346 ; rdf:subject ?pfs104 ; rdf:predicate up:annotation ; rdf:object ?annotation105 . _:180398 a rdf:Statement ; up:source unirule:MF_00453 ; rdf:subject ?pfs111 ; rdf:predicate up:annotation ; rdf:object ?annotation112 . _:180399 a rdf:Statement ; up:attribution _:180347 ; rdf:subject ?pfs111 ; rdf:predicate up:annotation ; rdf:object ?annotation112 . _:180400 a rdf:Statement ; up:source unirule:MF_00453 ; rdf:subject ?pfs119 ; rdf:predicate up:annotation ; rdf:object ?annotation120 . _:180401 a rdf:Statement ; up:attribution _:180348 ; rdf:subject ?pfs119 ; rdf:predicate up:annotation ; rdf:object ?annotation120 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00453 #Rule MF_00453 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03 VALUES ?supertaxon126 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00453 . ?thisOrganism rdfs:subClassOf+ ?supertaxon126 . BIND(URI(CONCAT(STR(?this), '#MF_00453a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00453a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00453a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00453a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00453a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00453a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00453a9')) AS ?annotation9) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionP22259133 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22259135 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22259MF_00453128 . ?templateMotifSequenceMatchRegionP22259133 faldo:begin ?templateMotifSequenceMatchBeginP22259134 . ?templateMotifSequenceMatchBeginP22259134 faldo:position ?templateMotifSequenceMatchBeginPositionP22259129 ; faldo:reference isoform:P22259-1 . ?templateMotifSequenceProfileAlignmentOperationP22259135 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . ?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00453139 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22259MF_00453130 . ?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00453138 . ?targetMotifMatchRegionMatchBeginMF_00453138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00453131 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00453139 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFT_16) . VALUES ?supertaxon127 {taxon:620 taxon:561} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon127 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453128, 1, (STRLEN(?templateMotifCigarP22259MF_00453128) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453128, CONCAT('^(?:-*[^-]){', STR(((523 - ?templateMotifSequenceMatchBeginPositionP22259129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453130, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453130) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453130, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453130) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) . BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_00453131) - 1) AS ?thisPositionOn16) . BIND(?thisPositionOn16 AS ?thisPositionOn17) . BIND(?this AS ?pfs1t142) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00453a13')) AS ?annotation13) . BIND(?this AS ?pfs12) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP22259149 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22259151 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22259MF_00453144 . ?templateMotifSequenceMatchRegionP22259149 faldo:begin ?templateMotifSequenceMatchBeginP22259150 . ?templateMotifSequenceMatchBeginP22259150 faldo:position ?templateMotifSequenceMatchBeginPositionP22259145 ; faldo:reference isoform:P22259-1 . ?templateMotifSequenceProfileAlignmentOperationP22259151 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . ?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00453155 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22259MF_00453146 . ?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00453154 . ?targetMotifMatchRegionMatchBeginMF_00453154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00453147 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00453155 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFT_15) . VALUES ?supertaxon143 {taxon:620 taxon:561} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon143 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453144, 1, (STRLEN(?templateMotifCigarP22259MF_00453144) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453144, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionP22259145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453146, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453146) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453146, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453146) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) . BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_00453147) - 1) AS ?thisPositionOn22) . BIND(?thisPositionOn22 AS ?thisPositionOn23) . BIND(?this AS ?pfs2t158) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00453a19')) AS ?annotation19) . BIND(?this AS ?pfs18) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionP22259164 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22259166 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22259MF_00453159 . ?templateMotifSequenceMatchRegionP22259164 faldo:begin ?templateMotifSequenceMatchBeginP22259165 . ?templateMotifSequenceMatchBeginP22259165 faldo:position ?templateMotifSequenceMatchBeginPositionP22259160 ; faldo:reference isoform:P22259-1 . ?templateMotifSequenceProfileAlignmentOperationP22259166 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . ?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00453170 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22259MF_00453161 . ?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00453169 . ?targetMotifMatchRegionMatchBeginMF_00453169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00453162 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00453170 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453159, 1, (STRLEN(?templateMotifCigarP22259MF_00453159) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453159, CONCAT('^(?:-*[^-]){', STR(((248 - ?templateMotifSequenceMatchBeginPositionP22259160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453161, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453161) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453161, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453161) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) . BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_00453162) - 1) AS ?thisPositionOn29) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453159, 1, (STRLEN(?templateMotifCigarP22259MF_00453159) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453159, CONCAT('^(?:-*[^-]){', STR(((256 - ?templateMotifSequenceMatchBeginPositionP22259160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453161, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453161) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453161, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453161) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) . BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_00453162) - 1) AS ?thisPositionOn30) . BIND(?this AS ?pfs3t175) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)) = 'GLSGTGKTT')) . BIND(URI(CONCAT(STR(?this), '#MF_00453a25')) AS ?annotation25) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionP22259181 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22259183 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22259MF_00453176 . ?templateMotifSequenceMatchRegionP22259181 faldo:begin ?templateMotifSequenceMatchBeginP22259182 . ?templateMotifSequenceMatchBeginP22259182 faldo:position ?templateMotifSequenceMatchBeginPositionP22259177 ; faldo:reference isoform:P22259-1 . ?templateMotifSequenceProfileAlignmentOperationP22259183 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . ?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00453187 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22259MF_00453178 . ?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00453186 . ?targetMotifMatchRegionMatchBeginMF_00453186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00453179 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00453187 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453176, 1, (STRLEN(?templateMotifCigarP22259MF_00453176) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453176, CONCAT('^(?:-*[^-]){', STR(((449 - ?templateMotifSequenceMatchBeginPositionP22259177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453178, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453178) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453178, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453178) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) . BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_00453179) - 1) AS ?thisPositionOn36) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453176, 1, (STRLEN(?templateMotifCigarP22259MF_00453176) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453176, CONCAT('^(?:-*[^-]){', STR(((450 - ?templateMotifSequenceMatchBeginPositionP22259177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453178, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453178) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453178, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453178) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) . BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_00453179) - 1) AS ?thisPositionOn37) . BIND(?this AS ?pfs3t192) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) . FILTER (REGEX('[RK][IV]', SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)))) . BIND(URI(CONCAT(STR(?this), '#MF_00453a32')) AS ?annotation32) . BIND(?this AS ?pfs31) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch197 faldo:location ?templateMotifSequenceMatchRegionP22259198 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22259200 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22259MF_00453193 . ?templateMotifSequenceMatchRegionP22259198 faldo:begin ?templateMotifSequenceMatchBeginP22259199 . ?templateMotifSequenceMatchBeginP22259199 faldo:position ?templateMotifSequenceMatchBeginPositionP22259194 ; faldo:reference isoform:P22259-1 . ?templateMotifSequenceProfileAlignmentOperationP22259200 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . ?targetMotifMatch201 faldo:location ?targetMotifMatchRegionMatch202 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00453204 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22259MF_00453195 . ?targetMotifMatchRegionMatch202 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00453203 . ?targetMotifMatchRegionMatchBeginMF_00453203 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00453196 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00453204 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453193, 1, (STRLEN(?templateMotifCigarP22259MF_00453193) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453193, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionP22259194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453195, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453195) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453195, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453195) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) . BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_00453196) - 1) AS ?thisPositionOn43) . BIND(?thisPositionOn43 AS ?thisPositionOn44) . BIND(?this AS ?pfs3t207) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00453a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch212 faldo:location ?templateMotifSequenceMatchRegionP22259213 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22259215 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22259MF_00453208 . ?templateMotifSequenceMatchRegionP22259213 faldo:begin ?templateMotifSequenceMatchBeginP22259214 . ?templateMotifSequenceMatchBeginP22259214 faldo:position ?templateMotifSequenceMatchBeginPositionP22259209 ; faldo:reference isoform:P22259-1 . ?templateMotifSequenceProfileAlignmentOperationP22259215 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . ?targetMotifMatch216 faldo:location ?targetMotifMatchRegionMatch217 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00453219 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22259MF_00453210 . ?targetMotifMatchRegionMatch217 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00453218 . ?targetMotifMatchRegionMatchBeginMF_00453218 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00453211 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00453219 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453208, 1, (STRLEN(?templateMotifCigarP22259MF_00453208) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453208, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionP22259209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453210, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453210) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453210, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453210) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) . BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_00453211) - 1) AS ?thisPositionOn50) . BIND(?thisPositionOn50 AS ?thisPositionOn51) . BIND(?this AS ?pfs3t222) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00453a46')) AS ?annotation46) . BIND(?this AS ?pfs45) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch227 faldo:location ?templateMotifSequenceMatchRegionP22259228 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22259230 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22259MF_00453223 . ?templateMotifSequenceMatchRegionP22259228 faldo:begin ?templateMotifSequenceMatchBeginP22259229 . ?templateMotifSequenceMatchBeginP22259229 faldo:position ?templateMotifSequenceMatchBeginPositionP22259224 ; faldo:reference isoform:P22259-1 . ?templateMotifSequenceProfileAlignmentOperationP22259230 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . ?targetMotifMatch231 faldo:location ?targetMotifMatchRegionMatch232 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00453234 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22259MF_00453225 . ?targetMotifMatchRegionMatch232 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00453233 . ?targetMotifMatchRegionMatchBeginMF_00453233 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00453226 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00453234 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453223, 1, (STRLEN(?templateMotifCigarP22259MF_00453223) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453223, CONCAT('^(?:-*[^-]){', STR(((269 - ?templateMotifSequenceMatchBeginPositionP22259224) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1235) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453225, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453225) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453225, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453225) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), '')))), '[^-]', ''))) AS ?step2236) . BIND(((?step2236 + ?targetMotifMatchRegionMatchBeginPositionMF_00453226) - 1) AS ?thisPositionOn57) . BIND(?thisPositionOn57 AS ?thisPositionOn58) . BIND(?this AS ?pfs3t237) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00453a53')) AS ?annotation53) . BIND(?this AS ?pfs52) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch242 faldo:location ?templateMotifSequenceMatchRegionP22259243 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22259245 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22259MF_00453238 . ?templateMotifSequenceMatchRegionP22259243 faldo:begin ?templateMotifSequenceMatchBeginP22259244 . ?templateMotifSequenceMatchBeginP22259244 faldo:position ?templateMotifSequenceMatchBeginPositionP22259239 ; faldo:reference isoform:P22259-1 . ?templateMotifSequenceProfileAlignmentOperationP22259245 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . ?targetMotifMatch246 faldo:location ?targetMotifMatchRegionMatch247 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00453249 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22259MF_00453240 . ?targetMotifMatchRegionMatch247 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00453248 . ?targetMotifMatchRegionMatchBeginMF_00453248 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00453241 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00453249 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453238, 1, (STRLEN(?templateMotifCigarP22259MF_00453238) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453238, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP22259239) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1250) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453240, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453240) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453240, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453240) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), '')))), '[^-]', ''))) AS ?step2251) . BIND(((?step2251 + ?targetMotifMatchRegionMatchBeginPositionMF_00453241) - 1) AS ?thisPositionOn65) . BIND(?thisPositionOn65 AS ?thisPositionOn66) . BIND(?this AS ?pfs3t252) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb61) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse62) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00453a60')) AS ?annotation60) . BIND(?this AS ?pfs59) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch257 faldo:location ?templateMotifSequenceMatchRegionP22259258 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22259260 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22259MF_00453253 . ?templateMotifSequenceMatchRegionP22259258 faldo:begin ?templateMotifSequenceMatchBeginP22259259 . ?templateMotifSequenceMatchBeginP22259259 faldo:position ?templateMotifSequenceMatchBeginPositionP22259254 ; faldo:reference isoform:P22259-1 . ?templateMotifSequenceProfileAlignmentOperationP22259260 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . ?targetMotifMatch261 faldo:location ?targetMotifMatchRegionMatch262 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00453264 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22259MF_00453255 . ?targetMotifMatchRegionMatch262 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00453263 . ?targetMotifMatchRegionMatchBeginMF_00453263 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00453256 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00453264 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453253, 1, (STRLEN(?templateMotifCigarP22259MF_00453253) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453253, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionP22259254) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1265) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453255, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453255) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453255, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453255) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), '')))), '[^-]', ''))) AS ?step2266) . BIND(((?step2266 + ?targetMotifMatchRegionMatchBeginPositionMF_00453256) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs3t267) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb69) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse70) . FILTER (REGEX('[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00453a68')) AS ?annotation68) . BIND(?this AS ?pfs67) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch272 faldo:location ?templateMotifSequenceMatchRegionP22259273 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22259275 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22259MF_00453268 . ?templateMotifSequenceMatchRegionP22259273 faldo:begin ?templateMotifSequenceMatchBeginP22259274 . ?templateMotifSequenceMatchBeginP22259274 faldo:position ?templateMotifSequenceMatchBeginPositionP22259269 ; faldo:reference isoform:P22259-1 . ?templateMotifSequenceProfileAlignmentOperationP22259275 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . ?targetMotifMatch276 faldo:location ?targetMotifMatchRegionMatch277 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00453279 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22259MF_00453270 . ?targetMotifMatchRegionMatch277 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00453278 . ?targetMotifMatchRegionMatchBeginMF_00453278 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00453271 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00453279 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453268, 1, (STRLEN(?templateMotifCigarP22259MF_00453268) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453268, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionP22259269) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1280) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453270, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453270) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453270, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453270) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), '')))), '[^-]', ''))) AS ?step2281) . BIND(((?step2281 + ?targetMotifMatchRegionMatchBeginPositionMF_00453271) - 1) AS ?thisPositionOn80) . BIND(?thisPositionOn80 AS ?thisPositionOn81) . BIND(?this AS ?pfs3t282) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00453a76')) AS ?annotation76) . BIND(?this AS ?pfs75) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch287 faldo:location ?templateMotifSequenceMatchRegionP22259288 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22259290 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22259MF_00453283 . ?templateMotifSequenceMatchRegionP22259288 faldo:begin ?templateMotifSequenceMatchBeginP22259289 . ?templateMotifSequenceMatchBeginP22259289 faldo:position ?templateMotifSequenceMatchBeginPositionP22259284 ; faldo:reference isoform:P22259-1 . ?templateMotifSequenceProfileAlignmentOperationP22259290 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . ?targetMotifMatch291 faldo:location ?targetMotifMatchRegionMatch292 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00453294 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22259MF_00453285 . ?targetMotifMatchRegionMatch292 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00453293 . ?targetMotifMatchRegionMatchBeginMF_00453293 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00453286 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00453294 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453283, 1, (STRLEN(?templateMotifCigarP22259MF_00453283) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453283, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionP22259284) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1295) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453285, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453285) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453285, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453285) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), '')))), '[^-]', ''))) AS ?step2296) . BIND(((?step2296 + ?targetMotifMatchRegionMatchBeginPositionMF_00453286) - 1) AS ?thisPositionOn88) . BIND(?thisPositionOn88 AS ?thisPositionOn89) . BIND(?this AS ?pfs3t297) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb84) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse85) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00453a83')) AS ?annotation83) . BIND(?this AS ?pfs82) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch302 faldo:location ?templateMotifSequenceMatchRegionP22259303 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22259305 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22259MF_00453298 . ?templateMotifSequenceMatchRegionP22259303 faldo:begin ?templateMotifSequenceMatchBeginP22259304 . ?templateMotifSequenceMatchBeginP22259304 faldo:position ?templateMotifSequenceMatchBeginPositionP22259299 ; faldo:reference isoform:P22259-1 . ?templateMotifSequenceProfileAlignmentOperationP22259305 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . ?targetMotifMatch306 faldo:location ?targetMotifMatchRegionMatch307 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00453309 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22259MF_00453300 . ?targetMotifMatchRegionMatch307 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00453308 . ?targetMotifMatchRegionMatchBeginMF_00453308 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00453301 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00453309 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453298, 1, (STRLEN(?templateMotifCigarP22259MF_00453298) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453298, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionP22259299) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1310) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453300, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453300) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453300, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453300) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), '')))), '[^-]', ''))) AS ?step2311) . BIND(((?step2311 + ?targetMotifMatchRegionMatchBeginPositionMF_00453301) - 1) AS ?thisPositionOn95) . BIND(?thisPositionOn95 AS ?thisPositionOn96) . BIND(?this AS ?pfs3t312) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb92) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse93) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn95, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00453a91')) AS ?annotation91) . BIND(?this AS ?pfs90) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch317 faldo:location ?templateMotifSequenceMatchRegionP22259318 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22259320 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22259MF_00453313 . ?templateMotifSequenceMatchRegionP22259318 faldo:begin ?templateMotifSequenceMatchBeginP22259319 . ?templateMotifSequenceMatchBeginP22259319 faldo:position ?templateMotifSequenceMatchBeginPositionP22259314 ; faldo:reference isoform:P22259-1 . ?templateMotifSequenceProfileAlignmentOperationP22259320 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . ?targetMotifMatch321 faldo:location ?targetMotifMatchRegionMatch322 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00453324 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22259MF_00453315 . ?targetMotifMatchRegionMatch322 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00453323 . ?targetMotifMatchRegionMatchBeginMF_00453323 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00453316 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00453324 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453313, 1, (STRLEN(?templateMotifCigarP22259MF_00453313) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453313, CONCAT('^(?:-*[^-]){', STR(((297 - ?templateMotifSequenceMatchBeginPositionP22259314) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1325) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453315, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453315) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453315, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453315) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), '')))), '[^-]', ''))) AS ?step2326) . BIND(((?step2326 + ?targetMotifMatchRegionMatchBeginPositionMF_00453316) - 1) AS ?thisPositionOn102) . BIND(?thisPositionOn102 AS ?thisPositionOn103) . BIND(?this AS ?pfs3t327) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb99) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse100) . FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00453a98')) AS ?annotation98) . BIND(?this AS ?pfs97) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch332 faldo:location ?templateMotifSequenceMatchRegionP22259333 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22259335 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22259MF_00453328 . ?templateMotifSequenceMatchRegionP22259333 faldo:begin ?templateMotifSequenceMatchBeginP22259334 . ?templateMotifSequenceMatchBeginP22259334 faldo:position ?templateMotifSequenceMatchBeginPositionP22259329 ; faldo:reference isoform:P22259-1 . ?templateMotifSequenceProfileAlignmentOperationP22259335 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . ?targetMotifMatch336 faldo:location ?targetMotifMatchRegionMatch337 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00453339 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22259MF_00453330 . ?targetMotifMatchRegionMatch337 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00453338 . ?targetMotifMatchRegionMatchBeginMF_00453338 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00453331 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00453339 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453328, 1, (STRLEN(?templateMotifCigarP22259MF_00453328) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453328, CONCAT('^(?:-*[^-]){', STR(((333 - ?templateMotifSequenceMatchBeginPositionP22259329) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1340) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453330, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453330) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453330, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1340), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453330, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453330) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453330, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1340), '}'), '')))), '[^-]', ''))) AS ?step2341) . BIND(((?step2341 + ?targetMotifMatchRegionMatchBeginPositionMF_00453331) - 1) AS ?thisPositionOn109) . BIND(?thisPositionOn109 AS ?thisPositionOn110) . BIND(?this AS ?pfs3t342) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb106) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse107) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn109, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00453a105')) AS ?annotation105) . BIND(?this AS ?pfs104) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch347 faldo:location ?templateMotifSequenceMatchRegionP22259348 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22259350 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22259MF_00453343 . ?templateMotifSequenceMatchRegionP22259348 faldo:begin ?templateMotifSequenceMatchBeginP22259349 . ?templateMotifSequenceMatchBeginP22259349 faldo:position ?templateMotifSequenceMatchBeginPositionP22259344 ; faldo:reference isoform:P22259-1 . ?templateMotifSequenceProfileAlignmentOperationP22259350 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . ?targetMotifMatch351 faldo:location ?targetMotifMatchRegionMatch352 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00453354 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22259MF_00453345 . ?targetMotifMatchRegionMatch352 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00453353 . ?targetMotifMatchRegionMatchBeginMF_00453353 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00453346 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00453354 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453343, 1, (STRLEN(?templateMotifCigarP22259MF_00453343) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453343, CONCAT('^(?:-*[^-]){', STR(((333 - ?templateMotifSequenceMatchBeginPositionP22259344) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1355) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453345, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453345) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453345, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1355), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453345, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453345) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453345, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1355), '}'), '')))), '[^-]', ''))) AS ?step2356) . BIND(((?step2356 + ?targetMotifMatchRegionMatchBeginPositionMF_00453346) - 1) AS ?thisPositionOn117) . BIND(?thisPositionOn117 AS ?thisPositionOn118) . BIND(?this AS ?pfs3t357) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfsb113) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfse114) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn117, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00453a112')) AS ?annotation112) . BIND(?this AS ?pfs111) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch362 faldo:location ?templateMotifSequenceMatchRegionP22259363 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22259365 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22259MF_00453358 . ?templateMotifSequenceMatchRegionP22259363 faldo:begin ?templateMotifSequenceMatchBeginP22259364 . ?templateMotifSequenceMatchBeginP22259364 faldo:position ?templateMotifSequenceMatchBeginPositionP22259359 ; faldo:reference isoform:P22259-1 . ?templateMotifSequenceProfileAlignmentOperationP22259365 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . ?targetMotifMatch366 faldo:location ?targetMotifMatchRegionMatch367 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00453369 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22259MF_00453360 . ?targetMotifMatchRegionMatch367 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00453368 . ?targetMotifMatchRegionMatchBeginMF_00453368 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00453361 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00453369 edam:has_input signature:MF_00453 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22259MF_00453358, 1, (STRLEN(?templateMotifCigarP22259MF_00453358) - STRLEN(REPLACE(?templateMotifCigarP22259MF_00453358, CONCAT('^(?:-*[^-]){', STR(((455 - ?templateMotifSequenceMatchBeginPositionP22259359) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1370) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22259MF_00453360, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453360) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453360, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1370), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22259MF_00453360, 1, (STRLEN(?targetMotifMatchCigarP22259MF_00453360) - STRLEN(REPLACE(?targetMotifMatchCigarP22259MF_00453360, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1370), '}'), '')))), '[^-]', ''))) AS ?step2371) . BIND(((?step2371 + ?targetMotifMatchRegionMatchBeginPositionMF_00453361) - 1) AS ?thisPositionOn124) . BIND(?thisPositionOn124 AS ?thisPositionOn125) . BIND(?this AS ?pfs3t372) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfsb121) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfse122) . FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn124, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00453a120')) AS ?annotation120) . BIND(?this AS ?pfs119) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1236 . BIND(?this AS ?case10) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag373) . } BIND(IF((BOUND(?tagFT_15) || BOUND(?tagFT_16)), ?caseWithTag373, ?UNBOUND_VARIABLE) AS ?case11) . }