CONSTRUCT { _:267775 up:source unirule:MF_00742 . _:267776 up:source unirule:MF_00742 . _:267777 up:source unirule:MF_00742 . _:267778 up:source unirule:MF_00742 . _:267779 up:source unirule:MF_00742 . _:267780 up:source unirule:MF_00742 . _:267781 up:source unirule:MF_00742 . _:267782 up:source unirule:MF_00742 . _:267783 up:source unirule:MF_00742 . _:267784 up:source unirule:MF_00742 . _:267785 up:source unirule:MF_00742 . _:267786 up:source unirule:MF_00742 . _:267787 up:source unirule:MF_00742 . _:267788 up:source unirule:MF_00742 . _:267789 up:source unirule:MF_00742 . _:267790 up:source unirule:MF_00742 . _:267791 up:source unirule:MF_00742 . _:267792 up:source unirule:MF_00742 . _:267793 up:source unirule:MF_00742 . _:267794 up:source unirule:MF_00742 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 , ?annotation8 ; up:classifiedWith GO:0008410 , keyword:808 ; up:recommendedName ?name0 . ?name0 up:ecName '2.8.3.16' ; up:fullName 'Formyl-CoA:oxalate CoA-transferase' ; up:shortName 'FCOCT' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Formyl-coenzyme A transferase' ; up:shortName 'Formyl-CoA transferase' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'frc' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/16545>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.8.3.16>. ?annotation6 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation7 a up:Pathway_Annotation ; rdfs:comment 'Metabolic intermediate degradation; oxalate degradation; CO(2) and formate from oxalate: step 1/2.' . ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the CoA-transferase III family. Frc subfamily.' . ?pfs9 up:annotation ?annotation10 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; up:ligand ?ligand13 ; rdf:type up:Binding_Site_Annotation . ?pfsb11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?ligand13 rdfs:subClassOf chebi:57287 . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:57287 . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation . ?pfsb25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf chebi:57287 . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:57287 . ?pfs37 up:annotation ?annotation38 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation . ?pfsb39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf chebi:57287 . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:57287 . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; up:ligand ?ligand55 ; rdf:type up:Binding_Site_Annotation . ?pfsb53 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?ligand55 rdfs:subClassOf ?molecule56 . ?molecule56 rdfs:label 'substrate' . ?pfs59 up:annotation ?annotation60 . ?annotation60 faldo:begin ?pfsb61 ; faldo:end ?pfse62 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Nucleophile' . ?pfsb61 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse62 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?pfs65 up:annotation ?annotation66 . ?annotation66 faldo:begin ?pfsb67 ; faldo:end ?pfse68 ; up:ligand ?ligand69 ; rdf:type up:Binding_Site_Annotation . ?pfsb67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?pfse68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?ligand69 rdfs:subClassOf chebi:57287 . ?pfs72 up:annotation ?annotation73 . ?annotation73 faldo:begin ?pfsb74 ; faldo:end ?pfse75 ; up:ligand ?ligand76 ; rdf:type up:Binding_Site_Annotation . ?pfsb74 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?pfse75 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?ligand76 rdfs:subClassOf chebi:57287 . _:267795 a rdf:Statement ; up:attribution _:267775 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:267796 a rdf:Statement ; up:attribution _:267776 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:267797 a rdf:Statement ; up:attribution _:267777 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:267798 a rdf:Statement ; up:attribution _:267778 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:267799 a rdf:Statement ; up:attribution _:267779 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:267800 a rdf:Statement ; up:attribution _:267780 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:267801 a rdf:Statement ; up:attribution _:267781 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:267802 a rdf:Statement ; up:attribution _:267782 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:267803 a rdf:Statement ; up:attribution _:267783 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:267804 a rdf:Statement ; up:attribution _:267784 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008410 . _:267805 a rdf:Statement ; up:source unirule:MF_00742 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:267806 a rdf:Statement ; up:attribution _:267785 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:267807 a rdf:Statement ; up:source unirule:MF_00742 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:267808 a rdf:Statement ; up:attribution _:267786 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:267809 a rdf:Statement ; up:source unirule:MF_00742 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:267810 a rdf:Statement ; up:attribution _:267787 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:267811 a rdf:Statement ; up:source unirule:MF_00742 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:267812 a rdf:Statement ; up:attribution _:267788 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:267813 a rdf:Statement ; up:source unirule:MF_00742 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:267814 a rdf:Statement ; up:attribution _:267789 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:267815 a rdf:Statement ; up:source unirule:MF_00742 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:267816 a rdf:Statement ; up:attribution _:267790 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:267817 a rdf:Statement ; up:source unirule:MF_00742 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:267818 a rdf:Statement ; up:attribution _:267791 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:267819 a rdf:Statement ; up:source unirule:MF_00742 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:267820 a rdf:Statement ; up:attribution _:267792 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:267821 a rdf:Statement ; up:source unirule:MF_00742 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:267822 a rdf:Statement ; up:attribution _:267793 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:267823 a rdf:Statement ; up:source unirule:MF_00742 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:267824 a rdf:Statement ; up:attribution _:267794 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00742 #Rule MF_00742 Created by:bairoch on:2003-12-01 Modified by:ecastro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00742 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00742a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00742a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00742a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00742a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00742a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00742a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00742a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionP6990284 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6990286 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69902MF_0074279 . ?templateMotifSequenceMatchRegionP6990284 faldo:begin ?templateMotifSequenceMatchBeginP6990285 . ?templateMotifSequenceMatchBeginP6990285 faldo:position ?templateMotifSequenceMatchBeginPositionP6990280 ; faldo:reference isoform:P69902-1 . ?templateMotifSequenceProfileAlignmentOperationP6990286 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . ?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0074290 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69902MF_0074281 . ?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0074289 . ?targetMotifMatchRegionMatchBeginMF_0074289 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0074282 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0074290 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69902MF_0074279, 1, (STRLEN(?templateMotifCigarP69902MF_0074279) - STRLEN(REPLACE(?templateMotifCigarP69902MF_0074279, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP6990280) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69902MF_0074281, 1, (STRLEN(?targetMotifMatchCigarP69902MF_0074281) - STRLEN(REPLACE(?targetMotifMatchCigarP69902MF_0074281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69902MF_0074281, 1, (STRLEN(?targetMotifMatchCigarP69902MF_0074281) - STRLEN(REPLACE(?targetMotifMatchCigarP69902MF_0074281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) . BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0074282) - 1) AS ?thisPositionOn14) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69902MF_0074279, 1, (STRLEN(?templateMotifCigarP69902MF_0074279) - STRLEN(REPLACE(?templateMotifCigarP69902MF_0074279, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionP6990280) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69902MF_0074281, 1, (STRLEN(?targetMotifMatchCigarP69902MF_0074281) - STRLEN(REPLACE(?targetMotifMatchCigarP69902MF_0074281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69902MF_0074281, 1, (STRLEN(?targetMotifMatchCigarP69902MF_0074281) - STRLEN(REPLACE(?targetMotifMatchCigarP69902MF_0074281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) . BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0074282) - 1) AS ?thisPositionOn15) . BIND(?this AS ?pfs1t95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'QS')) . BIND(URI(CONCAT(STR(?this), '#MF_00742a10')) AS ?annotation10) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch100 faldo:location ?templateMotifSequenceMatchRegionP69902101 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69902103 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP69902MF_0074296 . ?templateMotifSequenceMatchRegionP69902101 faldo:begin ?templateMotifSequenceMatchBeginP69902102 . ?templateMotifSequenceMatchBeginP69902102 faldo:position ?templateMotifSequenceMatchBeginPositionP6990297 ; faldo:reference isoform:P69902-1 . ?templateMotifSequenceProfileAlignmentOperationP69902103 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . ?targetMotifMatch104 faldo:location ?targetMotifMatchRegionMatch105 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742107 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP69902MF_0074298 . ?targetMotifMatchRegionMatch105 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742106 . ?targetMotifMatchRegionMatchBeginMF_00742106 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0074299 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00742107 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69902MF_0074296, 1, (STRLEN(?templateMotifCigarP69902MF_0074296) - STRLEN(REPLACE(?templateMotifCigarP69902MF_0074296, CONCAT('^(?:-*[^-]){', STR(((273 - ?templateMotifSequenceMatchBeginPositionP6990297) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69902MF_0074298, 1, (STRLEN(?targetMotifMatchCigarP69902MF_0074298) - STRLEN(REPLACE(?targetMotifMatchCigarP69902MF_0074298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69902MF_0074298, 1, (STRLEN(?targetMotifMatchCigarP69902MF_0074298) - STRLEN(REPLACE(?targetMotifMatchCigarP69902MF_0074298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) . BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0074299) - 1) AS ?thisPositionOn21) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69902MF_0074296, 1, (STRLEN(?templateMotifCigarP69902MF_0074296) - STRLEN(REPLACE(?templateMotifCigarP69902MF_0074296, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionP6990297) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69902MF_0074298, 1, (STRLEN(?targetMotifMatchCigarP69902MF_0074298) - STRLEN(REPLACE(?targetMotifMatchCigarP69902MF_0074298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69902MF_0074298, 1, (STRLEN(?targetMotifMatchCigarP69902MF_0074298) - STRLEN(REPLACE(?targetMotifMatchCigarP69902MF_0074298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) . BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_0074299) - 1) AS ?thisPositionOn22) . BIND(?this AS ?pfs1t112) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER (REGEX('QE[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) . BIND(URI(CONCAT(STR(?this), '#MF_00742a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionO06644118 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06644120 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO06644MF_00742113 . ?templateMotifSequenceMatchRegionO06644118 faldo:begin ?templateMotifSequenceMatchBeginO06644119 . ?templateMotifSequenceMatchBeginO06644119 faldo:position ?templateMotifSequenceMatchBeginPositionO06644114 ; faldo:reference isoform:O06644-1 . ?templateMotifSequenceProfileAlignmentOperationO06644120 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . ?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742124 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO06644MF_00742115 . ?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742123 . ?targetMotifMatchRegionMatchBeginMF_00742123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00742116 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00742124 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742113, 1, (STRLEN(?templateMotifCigarO06644MF_00742113) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742113, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionO06644114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742115, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742115) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742115, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742115) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) . BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_00742116) - 1) AS ?thisPositionOn28) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742113, 1, (STRLEN(?templateMotifCigarO06644MF_00742113) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742113, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionO06644114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742115, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742115) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742115, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742115) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) . BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_00742116) - 1) AS ?thisPositionOn29) . BIND(?this AS ?pfs2t129) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) . FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX]QA', SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)))) . BIND(URI(CONCAT(STR(?this), '#MF_00742a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionO06644135 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06644137 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO06644MF_00742130 . ?templateMotifSequenceMatchRegionO06644135 faldo:begin ?templateMotifSequenceMatchBeginO06644136 . ?templateMotifSequenceMatchBeginO06644136 faldo:position ?templateMotifSequenceMatchBeginPositionO06644131 ; faldo:reference isoform:O06644-1 . ?templateMotifSequenceProfileAlignmentOperationO06644137 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . ?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742141 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO06644MF_00742132 . ?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742140 . ?targetMotifMatchRegionMatchBeginMF_00742140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00742133 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00742141 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742130, 1, (STRLEN(?templateMotifCigarO06644MF_00742130) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742130, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionO06644131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742132, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742132) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742132, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742132) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) . BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_00742133) - 1) AS ?thisPositionOn35) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742130, 1, (STRLEN(?templateMotifCigarO06644MF_00742130) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742130, CONCAT('^(?:-*[^-]){', STR(((75 - ?templateMotifSequenceMatchBeginPositionO06644131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742132, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742132) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742132, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742132) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) . BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00742133) - 1) AS ?thisPositionOn36) . BIND(?this AS ?pfs2t146) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER (REGEX('L[ARNDCQEGHILKMFPSTWYVBZJUOX][MT]K', SUBSTR(?thisSequenceValue, ?thisPositionOn35, (?thisPositionOn36 - ?thisPositionOn35)))) . BIND(URI(CONCAT(STR(?this), '#MF_00742a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionO06644152 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06644154 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO06644MF_00742147 . ?templateMotifSequenceMatchRegionO06644152 faldo:begin ?templateMotifSequenceMatchBeginO06644153 . ?templateMotifSequenceMatchBeginO06644153 faldo:position ?templateMotifSequenceMatchBeginPositionO06644148 ; faldo:reference isoform:O06644-1 . ?templateMotifSequenceProfileAlignmentOperationO06644154 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . ?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742158 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO06644MF_00742149 . ?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742157 . ?targetMotifMatchRegionMatchBeginMF_00742157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00742150 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00742158 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742147, 1, (STRLEN(?templateMotifCigarO06644MF_00742147) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742147, CONCAT('^(?:-*[^-]){', STR(((96 - ?templateMotifSequenceMatchBeginPositionO06644148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742149, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742149) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742149, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742149) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) . BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_00742150) - 1) AS ?thisPositionOn42) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742147, 1, (STRLEN(?templateMotifCigarO06644MF_00742147) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742147, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionO06644148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742149, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742149) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742149, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742149) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) . BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_00742150) - 1) AS ?thisPositionOn43) . BIND(?this AS ?pfs2t163) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) . FILTER (REGEX('N[ARNDCQEGHILKMFPSTWYVBZJUOX][GAH]', SUBSTR(?thisSequenceValue, ?thisPositionOn42, (?thisPositionOn43 - ?thisPositionOn42)))) . BIND(URI(CONCAT(STR(?this), '#MF_00742a38')) AS ?annotation38) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionO06644169 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06644171 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO06644MF_00742164 . ?templateMotifSequenceMatchRegionO06644169 faldo:begin ?templateMotifSequenceMatchBeginO06644170 . ?templateMotifSequenceMatchBeginO06644170 faldo:position ?templateMotifSequenceMatchBeginPositionO06644165 ; faldo:reference isoform:O06644-1 . ?templateMotifSequenceProfileAlignmentOperationO06644171 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . ?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742175 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO06644MF_00742166 . ?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742174 . ?targetMotifMatchRegionMatchBeginMF_00742174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00742167 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00742175 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742164, 1, (STRLEN(?templateMotifCigarO06644MF_00742164) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742164, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionO06644165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742166, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742166) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742166, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742166) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) . BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_00742167) - 1) AS ?thisPositionOn49) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742164, 1, (STRLEN(?templateMotifCigarO06644MF_00742164) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742164, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionO06644165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742166, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742166) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742166, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742166) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) . BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_00742167) - 1) AS ?thisPositionOn50) . BIND(?this AS ?pfs2t180) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER (REGEX('K[ARNDCQEGHILKMFPSTWYVBZJUOX]YE', SUBSTR(?thisSequenceValue, ?thisPositionOn49, (?thisPositionOn50 - ?thisPositionOn49)))) . BIND(URI(CONCAT(STR(?this), '#MF_00742a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch185 faldo:location ?templateMotifSequenceMatchRegionO06644186 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06644188 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO06644MF_00742181 . ?templateMotifSequenceMatchRegionO06644186 faldo:begin ?templateMotifSequenceMatchBeginO06644187 . ?templateMotifSequenceMatchBeginO06644187 faldo:position ?templateMotifSequenceMatchBeginPositionO06644182 ; faldo:reference isoform:O06644-1 . ?templateMotifSequenceProfileAlignmentOperationO06644188 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . ?targetMotifMatch189 faldo:location ?targetMotifMatchRegionMatch190 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742192 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO06644MF_00742183 . ?targetMotifMatchRegionMatch190 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742191 . ?targetMotifMatchRegionMatchBeginMF_00742191 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00742184 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00742192 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742181, 1, (STRLEN(?templateMotifCigarO06644MF_00742181) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742181, CONCAT('^(?:-*[^-]){', STR(((260 - ?templateMotifSequenceMatchBeginPositionO06644182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742183, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742183) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742183, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742183) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) . BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_00742184) - 1) AS ?thisPositionOn57) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742181, 1, (STRLEN(?templateMotifCigarO06644MF_00742181) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742181, CONCAT('^(?:-*[^-]){', STR(((262 - ?templateMotifSequenceMatchBeginPositionO06644182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742183, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742183) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742183, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742183) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) . BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00742184) - 1) AS ?thisPositionOn58) . BIND(?this AS ?pfs2t197) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse54) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, (?thisPositionOn58 - ?thisPositionOn57)) = 'GGQ')) . BIND(URI(CONCAT(STR(?this), '#MF_00742a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionO06644203 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06644205 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO06644MF_00742198 . ?templateMotifSequenceMatchRegionO06644203 faldo:begin ?templateMotifSequenceMatchBeginO06644204 . ?templateMotifSequenceMatchBeginO06644204 faldo:position ?templateMotifSequenceMatchBeginPositionO06644199 ; faldo:reference isoform:O06644-1 . ?templateMotifSequenceProfileAlignmentOperationO06644205 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . ?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742209 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO06644MF_00742200 . ?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742208 . ?targetMotifMatchRegionMatchBeginMF_00742208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00742201 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00742209 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742198, 1, (STRLEN(?templateMotifCigarO06644MF_00742198) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742198, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionO06644199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742200, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742200) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742200, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742200) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) . BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_00742201) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs2t212) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb61) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse62) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00742a60')) AS ?annotation60) . BIND(?this AS ?pfs59) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionO06644218 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06644220 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO06644MF_00742213 . ?templateMotifSequenceMatchRegionO06644218 faldo:begin ?templateMotifSequenceMatchBeginO06644219 . ?templateMotifSequenceMatchBeginO06644219 faldo:position ?templateMotifSequenceMatchBeginPositionO06644214 ; faldo:reference isoform:O06644-1 . ?templateMotifSequenceProfileAlignmentOperationO06644220 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . ?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742224 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO06644MF_00742215 . ?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742223 . ?targetMotifMatchRegionMatchBeginMF_00742223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00742216 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00742224 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742213, 1, (STRLEN(?templateMotifCigarO06644MF_00742213) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742213, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionO06644214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742215, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742215) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742215, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742215) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) . BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_00742216) - 1) AS ?thisPositionOn70) . BIND(?thisPositionOn70 AS ?thisPositionOn71) . BIND(?this AS ?pfs2t227) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00742a66')) AS ?annotation66) . BIND(?this AS ?pfs65) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionO06644233 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO06644235 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO06644MF_00742228 . ?templateMotifSequenceMatchRegionO06644233 faldo:begin ?templateMotifSequenceMatchBeginO06644234 . ?templateMotifSequenceMatchBeginO06644234 faldo:position ?templateMotifSequenceMatchBeginPositionO06644229 ; faldo:reference isoform:O06644-1 . ?templateMotifSequenceProfileAlignmentOperationO06644235 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . ?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00742239 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO06644MF_00742230 . ?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00742238 . ?targetMotifMatchRegionMatchBeginMF_00742238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00742231 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00742239 edam:has_input signature:MF_00742 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO06644MF_00742228, 1, (STRLEN(?templateMotifCigarO06644MF_00742228) - STRLEN(REPLACE(?templateMotifCigarO06644MF_00742228, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionO06644229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO06644MF_00742230, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742230) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO06644MF_00742230, 1, (STRLEN(?targetMotifMatchCigarO06644MF_00742230) - STRLEN(REPLACE(?targetMotifMatchCigarO06644MF_00742230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) . BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_00742231) - 1) AS ?thisPositionOn77) . BIND(?thisPositionOn77 AS ?thisPositionOn78) . BIND(?this AS ?pfs2t242) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) . FILTER (REGEX('[RH]', SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00742a73')) AS ?annotation73) . BIND(?this AS ?pfs72) . } }