CONSTRUCT { _:314807 up:source unirule:MF_00905 . _:314808 up:source unirule:MF_00905 . _:314809 up:source unirule:MF_00905 . _:314810 up:source unirule:MF_00905 . _:314811 up:source unirule:MF_00905 . _:314812 up:source unirule:MF_00905 . _:314813 up:source unirule:MF_00905 . _:314814 up:source unirule:MF_00905 . _:314815 up:source unirule:MF_00905 . _:314816 up:source unirule:MF_00905 . _:314817 up:source unirule:MF_00905 . _:314818 up:source unirule:MF_00905 . _:314819 up:source unirule:MF_00905 . _:314820 up:source unirule:MF_00905 . _:314821 up:source unirule:MF_00905 . _:314822 up:source unirule:MF_00905 . _:314823 up:source unirule:MF_00905 . _:314824 up:source unirule:MF_00905 . _:314825 up:source unirule:MF_00905 . _:314826 up:source unirule:MF_00905 . _:314827 up:source unirule:MF_00905 . _:314828 up:source unirule:MF_00905 . _:314829 up:source unirule:MF_00905 . _:314830 up:source unirule:MF_00905 . _:314831 up:source unirule:MF_00905 . _:314832 up:source unirule:MF_00905 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation6 ; up:classifiedWith GO:0000166 , GO:0004115 , GO:0046872 , keyword:114 , keyword:378 , keyword:408 , keyword:479 , keyword:547 ; up:recommendedName ?name0 . ?name0 up:ecName '3.1.4.53' ; up:fullName "3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA" ; up:shortName "3',5'-cyclic AMP phosphodiesterase" , 'cAMP phosphodiesterase' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'cpdA' . ?annotation2 a up:Function_Annotation ; rdfs:comment "Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes." . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/25277>; up:enzymeClass <http://purl.uniprot.org/enzyme/3.1.4.53>. ?annotation5 up:cofactor chebi:29033 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 2 Fe(2+) ions per subunit.' . ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the cyclic nucleotide phosphodiesterase class-III family.' . ?pfs7 up:annotation ?annotation8 . ?annotation8 faldo:begin ?pfsb9 ; faldo:end ?pfse10 ; up:ligand ?ligand11 ; rdf:type up:Binding_Site_Annotation . ?pfsb9 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfse10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?ligand11 rdfs:subClassOf chebi:456215 . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; up:ligand ?ligand18 ; rdf:type up:Binding_Site_Annotation . ?pfsb16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?ligand18 rdfs:subClassOf chebi:24875 . ?pfs21 up:annotation ?annotation22 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; up:ligand ?ligand25 ; rdf:type up:Binding_Site_Annotation . ?pfsb23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?ligand25 rdfs:subClassOf chebi:24875 . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; up:ligand ?ligand32 ; rdf:type up:Binding_Site_Annotation . ?pfsb30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand32 rdfs:subClassOf chebi:24875 . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; up:ligand ?ligand39 ; rdf:type up:Binding_Site_Annotation . ?pfsb37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?ligand39 rdfs:subClassOf chebi:24875 . ?pfs42 up:annotation ?annotation43 . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; up:ligand ?ligand46 ; rdf:type up:Binding_Site_Annotation . ?pfsb44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?ligand46 rdfs:subClassOf chebi:24875 . ?pfs49 up:annotation ?annotation50 . ?annotation50 faldo:begin ?pfsb51 ; faldo:end ?pfse52 ; up:ligand ?ligand53 ; rdf:type up:Binding_Site_Annotation . ?pfsb51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfse52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?ligand53 rdfs:subClassOf chebi:24875 . ?pfs56 up:annotation ?annotation57 . ?annotation57 faldo:begin ?pfsb58 ; faldo:end ?pfse59 ; up:ligand ?ligand60 ; rdf:type up:Binding_Site_Annotation . ?pfsb58 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?pfse59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?ligand60 rdfs:subClassOf chebi:24875 . ?pfs63 up:annotation ?annotation64 . ?annotation64 faldo:begin ?pfsb65 ; faldo:end ?pfse66 ; up:ligand ?ligand67 ; rdf:type up:Binding_Site_Annotation . ?pfsb65 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?pfse66 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?ligand67 rdfs:subClassOf chebi:24875 . ?pfs70 up:annotation ?annotation71 . ?annotation71 faldo:begin ?pfsb72 ; faldo:end ?pfse73 ; up:ligand ?ligand74 ; rdf:type up:Binding_Site_Annotation . ?pfsb72 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?pfse73 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?ligand74 rdfs:subClassOf chebi:456215 . ?pfs77 up:annotation ?annotation78 . ?annotation78 faldo:begin ?pfsb79 ; faldo:end ?pfse80 ; up:ligand ?ligand81 ; rdf:type up:Binding_Site_Annotation . ?pfsb79 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?pfse80 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?ligand81 rdfs:subClassOf chebi:456215 . ?pfs84 up:annotation ?annotation85 . ?annotation85 faldo:begin ?pfsb86 ; faldo:end ?pfse87 ; up:ligand ?ligand88 ; rdf:type up:Binding_Site_Annotation . ?pfsb86 faldo:position ?thisPositionOn89 ; rdf:type faldo:ExactPosition . ?pfse87 faldo:position ?thisPositionOn90 ; rdf:type faldo:ExactPosition . ?ligand88 rdfs:subClassOf chebi:456215 . _:314833 a rdf:Statement ; up:attribution _:314807 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:314834 a rdf:Statement ; up:attribution _:314808 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:314835 a rdf:Statement ; up:attribution _:314809 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:314836 a rdf:Statement ; up:attribution _:314810 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:314837 a rdf:Statement ; up:attribution _:314811 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:314838 a rdf:Statement ; up:attribution _:314812 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:314839 a rdf:Statement ; up:attribution _:314813 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:114 . _:314840 a rdf:Statement ; up:attribution _:314814 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:314841 a rdf:Statement ; up:attribution _:314815 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:314842 a rdf:Statement ; up:attribution _:314816 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:314843 a rdf:Statement ; up:attribution _:314817 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:314844 a rdf:Statement ; up:attribution _:314818 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004115 . _:314845 a rdf:Statement ; up:attribution _:314819 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0046872 . _:314846 a rdf:Statement ; up:attribution _:314820 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000166 . _:314847 a rdf:Statement ; up:source unirule:MF_00905 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:314848 a rdf:Statement ; up:attribution _:314821 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:314849 a rdf:Statement ; up:source unirule:MF_00905 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:314850 a rdf:Statement ; up:attribution _:314822 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:314851 a rdf:Statement ; up:source unirule:MF_00905 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:314852 a rdf:Statement ; up:attribution _:314823 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:314853 a rdf:Statement ; up:source unirule:MF_00905 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:314854 a rdf:Statement ; up:attribution _:314824 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:314855 a rdf:Statement ; up:source unirule:MF_00905 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:314856 a rdf:Statement ; up:attribution _:314825 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:314857 a rdf:Statement ; up:source unirule:MF_00905 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:314858 a rdf:Statement ; up:attribution _:314826 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:314859 a rdf:Statement ; up:source unirule:MF_00905 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:314860 a rdf:Statement ; up:attribution _:314827 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:314861 a rdf:Statement ; up:source unirule:MF_00905 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:314862 a rdf:Statement ; up:attribution _:314828 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:314863 a rdf:Statement ; up:source unirule:MF_00905 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:314864 a rdf:Statement ; up:attribution _:314829 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:314865 a rdf:Statement ; up:source unirule:MF_00905 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:314866 a rdf:Statement ; up:attribution _:314830 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:314867 a rdf:Statement ; up:source unirule:MF_00905 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:314868 a rdf:Statement ; up:attribution _:314831 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:314869 a rdf:Statement ; up:source unirule:MF_00905 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:314870 a rdf:Statement ; up:attribution _:314832 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00905 #Rule MF_00905 Created by:? on:2011-08-17 Modified by:Edouard de Castro on:2022-11-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00905 . ?thisOrganism rdfs:subClassOf+ taxon:1236 . BIND(URI(CONCAT(STR(?this), '#MF_00905a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00905a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00905a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00905a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00905a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionP0AEW496 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW498 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AEW4MF_0090591 . ?templateMotifSequenceMatchRegionP0AEW496 faldo:begin ?templateMotifSequenceMatchBeginP0AEW497 . ?templateMotifSequenceMatchBeginP0AEW497 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW492 ; faldo:reference isoform:P0AEW4-1 . ?templateMotifSequenceProfileAlignmentOperationP0AEW498 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . ?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905102 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AEW4MF_0090593 . ?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905101 . ?targetMotifMatchRegionMatchBeginMF_00905101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0090594 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00905102 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_0090591, 1, (STRLEN(?templateMotifCigarP0AEW4MF_0090591) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_0090591, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionP0AEW492) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_0090593, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_0090593) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_0090593, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_0090593, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_0090593) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_0090593, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) . BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0090594) - 1) AS ?thisPositionOn12) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_0090591, 1, (STRLEN(?templateMotifCigarP0AEW4MF_0090591) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_0090591, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionP0AEW492) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_0090593, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_0090593) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_0090593, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_0090593, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_0090593) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_0090593, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) . BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0090594) - 1) AS ?thisPositionOn13) . BIND(?this AS ?pfs1t107) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)) = 'NH')) . BIND(URI(CONCAT(STR(?this), '#MF_00905a8')) AS ?annotation8) . BIND(?this AS ?pfs7) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionP0AEW4113 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4115 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AEW4MF_00905108 . ?templateMotifSequenceMatchRegionP0AEW4113 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4114 . ?templateMotifSequenceMatchBeginP0AEW4114 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4109 ; faldo:reference isoform:P0AEW4-1 . ?templateMotifSequenceProfileAlignmentOperationP0AEW4115 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . ?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905119 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AEW4MF_00905110 . ?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905118 . ?targetMotifMatchRegionMatchBeginMF_00905118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905111 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00905119 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905108, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905108) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905108, CONCAT('^(?:-*[^-]){', STR(((22 - ?templateMotifSequenceMatchBeginPositionP0AEW4109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905110, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905110) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905110, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905110) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) . BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_00905111) - 1) AS ?thisPositionOn19) . BIND(?thisPositionOn19 AS ?thisPositionOn20) . BIND(?this AS ?pfs1t122) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00905a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionP0AEW4128 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4130 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AEW4MF_00905123 . ?templateMotifSequenceMatchRegionP0AEW4128 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4129 . ?templateMotifSequenceMatchBeginP0AEW4129 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4124 ; faldo:reference isoform:P0AEW4-1 . ?templateMotifSequenceProfileAlignmentOperationP0AEW4130 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . ?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905134 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AEW4MF_00905125 . ?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905133 . ?targetMotifMatchRegionMatchBeginMF_00905133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905126 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00905134 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905123, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905123) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905123, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionP0AEW4124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905125, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905125) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905125, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905125) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) . BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_00905126) - 1) AS ?thisPositionOn26) . BIND(?thisPositionOn26 AS ?thisPositionOn27) . BIND(?this AS ?pfs1t137) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00905a22')) AS ?annotation22) . BIND(?this AS ?pfs21) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionP0AEW4143 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4145 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AEW4MF_00905138 . ?templateMotifSequenceMatchRegionP0AEW4143 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4144 . ?templateMotifSequenceMatchBeginP0AEW4144 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4139 ; faldo:reference isoform:P0AEW4-1 . ?templateMotifSequenceProfileAlignmentOperationP0AEW4145 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . ?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905149 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AEW4MF_00905140 . ?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905148 . ?targetMotifMatchRegionMatchBeginMF_00905148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905141 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00905149 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905138, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905138) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905138, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP0AEW4139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905140, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905140) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905140, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905140) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) . BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_00905141) - 1) AS ?thisPositionOn33) . BIND(?thisPositionOn33 AS ?thisPositionOn34) . BIND(?this AS ?pfs1t152) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00905a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionP0AEW4158 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4160 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AEW4MF_00905153 . ?templateMotifSequenceMatchRegionP0AEW4158 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4159 . ?templateMotifSequenceMatchBeginP0AEW4159 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4154 ; faldo:reference isoform:P0AEW4-1 . ?templateMotifSequenceProfileAlignmentOperationP0AEW4160 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . ?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905164 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AEW4MF_00905155 . ?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905163 . ?targetMotifMatchRegionMatchBeginMF_00905163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905156 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00905164 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905153, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905153) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905153, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP0AEW4154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905155, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905155) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905155, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905155) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) . BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_00905156) - 1) AS ?thisPositionOn40) . BIND(?thisPositionOn40 AS ?thisPositionOn41) . BIND(?this AS ?pfs1t167) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00905a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionP0AEW4173 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4175 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AEW4MF_00905168 . ?templateMotifSequenceMatchRegionP0AEW4173 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4174 . ?templateMotifSequenceMatchBeginP0AEW4174 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4169 ; faldo:reference isoform:P0AEW4-1 . ?templateMotifSequenceProfileAlignmentOperationP0AEW4175 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . ?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905179 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AEW4MF_00905170 . ?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905178 . ?targetMotifMatchRegionMatchBeginMF_00905178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905171 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00905179 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905168, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905168) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905168, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionP0AEW4169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905170, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905170) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905170, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905170) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) . BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_00905171) - 1) AS ?thisPositionOn47) . BIND(?thisPositionOn47 AS ?thisPositionOn48) . BIND(?this AS ?pfs1t182) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_00905a43')) AS ?annotation43) . BIND(?this AS ?pfs42) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionP0AEW4188 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4190 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AEW4MF_00905183 . ?templateMotifSequenceMatchRegionP0AEW4188 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4189 . ?templateMotifSequenceMatchBeginP0AEW4189 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4184 ; faldo:reference isoform:P0AEW4-1 . ?templateMotifSequenceProfileAlignmentOperationP0AEW4190 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . ?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905194 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AEW4MF_00905185 . ?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905193 . ?targetMotifMatchRegionMatchBeginMF_00905193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905186 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00905194 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905183, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905183) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905183, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP0AEW4184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905185, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905185) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905185, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905185) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) . BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00905186) - 1) AS ?thisPositionOn54) . BIND(?thisPositionOn54 AS ?thisPositionOn55) . BIND(?this AS ?pfs1t197) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00905a50')) AS ?annotation50) . BIND(?this AS ?pfs49) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionP0AEW4203 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4205 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AEW4MF_00905198 . ?templateMotifSequenceMatchRegionP0AEW4203 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4204 . ?templateMotifSequenceMatchBeginP0AEW4204 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4199 ; faldo:reference isoform:P0AEW4-1 . ?templateMotifSequenceProfileAlignmentOperationP0AEW4205 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . ?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905209 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AEW4MF_00905200 . ?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905208 . ?targetMotifMatchRegionMatchBeginMF_00905208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905201 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00905209 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905198, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905198) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905198, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionP0AEW4199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905200, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905200) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905200, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905200) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) . BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_00905201) - 1) AS ?thisPositionOn61) . BIND(?thisPositionOn61 AS ?thisPositionOn62) . BIND(?this AS ?pfs1t212) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00905a57')) AS ?annotation57) . BIND(?this AS ?pfs56) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionP0AEW4218 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4220 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AEW4MF_00905213 . ?templateMotifSequenceMatchRegionP0AEW4218 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4219 . ?templateMotifSequenceMatchBeginP0AEW4219 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4214 ; faldo:reference isoform:P0AEW4-1 . ?templateMotifSequenceProfileAlignmentOperationP0AEW4220 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . ?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905224 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AEW4MF_00905215 . ?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905223 . ?targetMotifMatchRegionMatchBeginMF_00905223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905216 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00905224 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905213, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905213) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905213, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP0AEW4214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905215, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905215) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905215, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905215) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) . BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_00905216) - 1) AS ?thisPositionOn68) . BIND(?thisPositionOn68 AS ?thisPositionOn69) . BIND(?this AS ?pfs1t227) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00905a64')) AS ?annotation64) . BIND(?this AS ?pfs63) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionP0AEW4233 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4235 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AEW4MF_00905228 . ?templateMotifSequenceMatchRegionP0AEW4233 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4234 . ?templateMotifSequenceMatchBeginP0AEW4234 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4229 ; faldo:reference isoform:P0AEW4-1 . ?templateMotifSequenceProfileAlignmentOperationP0AEW4235 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . ?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905239 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AEW4MF_00905230 . ?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905238 . ?targetMotifMatchRegionMatchBeginMF_00905238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905231 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00905239 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905228, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905228) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905228, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionP0AEW4229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905230, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905230) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905230, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905230) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) . BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_00905231) - 1) AS ?thisPositionOn75) . BIND(?thisPositionOn75 AS ?thisPositionOn76) . BIND(?this AS ?pfs1t242) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00905a71')) AS ?annotation71) . BIND(?this AS ?pfs70) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch247 faldo:location ?templateMotifSequenceMatchRegionP0AEW4248 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4250 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AEW4MF_00905243 . ?templateMotifSequenceMatchRegionP0AEW4248 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4249 . ?templateMotifSequenceMatchBeginP0AEW4249 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4244 ; faldo:reference isoform:P0AEW4-1 . ?templateMotifSequenceProfileAlignmentOperationP0AEW4250 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . ?targetMotifMatch251 faldo:location ?targetMotifMatchRegionMatch252 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905254 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AEW4MF_00905245 . ?targetMotifMatchRegionMatch252 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905253 . ?targetMotifMatchRegionMatchBeginMF_00905253 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905246 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00905254 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905243, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905243) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905243, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP0AEW4244) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1255) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905245, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905245) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905245, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905245) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), '')))), '[^-]', ''))) AS ?step2256) . BIND(((?step2256 + ?targetMotifMatchRegionMatchBeginPositionMF_00905246) - 1) AS ?thisPositionOn82) . BIND(?thisPositionOn82 AS ?thisPositionOn83) . BIND(?this AS ?pfs1t257) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00905a78')) AS ?annotation78) . BIND(?this AS ?pfs77) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch262 faldo:location ?templateMotifSequenceMatchRegionP0AEW4263 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4265 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AEW4MF_00905258 . ?templateMotifSequenceMatchRegionP0AEW4263 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4264 . ?templateMotifSequenceMatchBeginP0AEW4264 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4259 ; faldo:reference isoform:P0AEW4-1 . ?templateMotifSequenceProfileAlignmentOperationP0AEW4265 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . ?targetMotifMatch266 faldo:location ?targetMotifMatchRegionMatch267 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905269 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AEW4MF_00905260 . ?targetMotifMatchRegionMatch267 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905268 . ?targetMotifMatchRegionMatchBeginMF_00905268 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905261 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00905269 edam:has_input signature:MF_00905 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905258, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905258) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905258, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP0AEW4259) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1270) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905260, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905260) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905260, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905260) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), '')))), '[^-]', ''))) AS ?step2271) . BIND(((?step2271 + ?targetMotifMatchRegionMatchBeginPositionMF_00905261) - 1) AS ?thisPositionOn89) . BIND(?thisPositionOn89 AS ?thisPositionOn90) . BIND(?this AS ?pfs1t272) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00905a85')) AS ?annotation85) . BIND(?this AS ?pfs84) . } }