CONSTRUCT { _:326322 up:source unirule:MF_00955 . _:326323 up:source unirule:MF_00955 . _:326324 up:source unirule:MF_00955 . _:326325 up:source unirule:MF_00955 . _:326326 up:source unirule:MF_00955 . _:326327 up:source unirule:MF_00955 . _:326328 up:source unirule:MF_00955 . _:326329 up:source unirule:MF_00955 . _:326330 up:source unirule:MF_00955 . _:326331 up:source unirule:MF_00955 . _:326332 up:source unirule:MF_00955 . _:326333 up:source unirule:MF_00955 . _:326334 up:source unirule:MF_00955 . _:326335 up:source unirule:MF_00955 . _:326336 up:source unirule:MF_00955 . _:326337 up:source unirule:MF_00955 . _:326338 up:source unirule:MF_00955 . _:326339 up:source unirule:MF_00955 . _:326340 up:source unirule:MF_00955 . _:326341 up:source unirule:MF_00955 . _:326342 up:source unirule:MF_00955 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 ; up:classifiedWith GO:0008446 , GO:0070401 , keyword:456 , keyword:521 ; up:recommendedName ?name0 . ?name0 up:ecName '4.2.1.47' ; up:fullName 'GDP-mannose 4,6-dehydratase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'GDP-D-mannose dehydratase' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'gmd' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6-deoxy-D-mannose.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/23820>; up:enzymeClass <http://purl.uniprot.org/enzyme/4.2.1.47>. ?annotation6 up:cofactor chebi:58349 ; rdf:type up:Cofactor_Annotation . ?annotation7 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the NAD(P)-dependent epimerase/dehydratase family. GDP-mannose 4,6-dehydratase subfamily.' . ?pfs8 up:annotation ?annotation9 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; up:ligand ?ligand12 ; rdf:type up:Binding_Site_Annotation . ?pfsb10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?ligand12 rdfs:subClassOf chebi:58349 . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; up:ligand ?ligand19 ; rdf:type up:Binding_Site_Annotation . ?pfsb17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?ligand19 rdfs:subClassOf chebi:58349 . ?pfs22 up:annotation ?annotation23 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; up:ligand ?ligand26 ; rdf:type up:Binding_Site_Annotation . ?pfsb24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?ligand26 rdfs:subClassOf chebi:58349 . ?pfs29 up:annotation ?annotation30 . ?annotation30 faldo:begin ?pfsb31 ; faldo:end ?pfse32 ; rdf:type up:Active_Site_Annotation . ?pfsb31 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse32 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Nucleophile' . ?pfsb37 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfs41 up:annotation ?annotation42 . ?annotation42 faldo:begin ?pfsb43 ; faldo:end ?pfse44 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Nucleophile' . ?pfsb43 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse44 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation . ?pfsb49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf chebi:58349 . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf chebi:58349 . ?pfs61 up:annotation ?annotation62 . ?annotation62 faldo:begin ?pfsb63 ; faldo:end ?pfse64 ; up:ligand ?ligand65 ; rdf:type up:Binding_Site_Annotation . ?pfsb63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?ligand65 rdfs:subClassOf chebi:58349 . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; up:ligand ?ligand72 ; rdf:type up:Binding_Site_Annotation . ?pfsb70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?ligand72 rdfs:subClassOf chebi:58349 . _:326343 a rdf:Statement ; up:attribution _:326322 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:326344 a rdf:Statement ; up:attribution _:326323 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:326345 a rdf:Statement ; up:attribution _:326324 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:326346 a rdf:Statement ; up:attribution _:326325 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:326347 a rdf:Statement ; up:attribution _:326326 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:326348 a rdf:Statement ; up:attribution _:326327 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:326349 a rdf:Statement ; up:attribution _:326328 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:326350 a rdf:Statement ; up:attribution _:326329 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:456 . _:326351 a rdf:Statement ; up:attribution _:326330 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:521 . _:326352 a rdf:Statement ; up:attribution _:326331 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008446 . _:326353 a rdf:Statement ; up:attribution _:326332 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0070401 . _:326354 a rdf:Statement ; up:source unirule:MF_00955 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:326355 a rdf:Statement ; up:attribution _:326333 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:326356 a rdf:Statement ; up:source unirule:MF_00955 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:326357 a rdf:Statement ; up:attribution _:326334 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:326358 a rdf:Statement ; up:source unirule:MF_00955 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:326359 a rdf:Statement ; up:attribution _:326335 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:326360 a rdf:Statement ; up:source unirule:MF_00955 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:326361 a rdf:Statement ; up:attribution _:326336 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:326362 a rdf:Statement ; up:source unirule:MF_00955 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:326363 a rdf:Statement ; up:attribution _:326337 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:326364 a rdf:Statement ; up:source unirule:MF_00955 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:326365 a rdf:Statement ; up:attribution _:326338 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:326366 a rdf:Statement ; up:source unirule:MF_00955 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:326367 a rdf:Statement ; up:attribution _:326339 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:326368 a rdf:Statement ; up:source unirule:MF_00955 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:326369 a rdf:Statement ; up:attribution _:326340 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:326370 a rdf:Statement ; up:source unirule:MF_00955 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:326371 a rdf:Statement ; up:attribution _:326341 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:326372 a rdf:Statement ; up:source unirule:MF_00955 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:326373 a rdf:Statement ; up:attribution _:326342 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00955 #Rule MF_00955 Created by:crivoire on:2013-04-11 Modified by:ecastro on:2023-06-01 VALUES ?supertaxon75 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00955 . ?thisOrganism rdfs:subClassOf+ ?supertaxon75 . BIND(URI(CONCAT(STR(?this), '#MF_00955a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00955a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00955a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00955a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00955a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00955a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionP0AC8881 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC8883 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AC88MF_0095576 . ?templateMotifSequenceMatchRegionP0AC8881 faldo:begin ?templateMotifSequenceMatchBeginP0AC8882 . ?templateMotifSequenceMatchBeginP0AC8882 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC8877 ; faldo:reference isoform:P0AC88-1 . ?templateMotifSequenceProfileAlignmentOperationP0AC8883 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . ?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0095587 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AC88MF_0095578 . ?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0095586 . ?targetMotifMatchRegionMatchBeginMF_0095586 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0095579 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0095587 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_0095576, 1, (STRLEN(?templateMotifCigarP0AC88MF_0095576) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_0095576, CONCAT('^(?:-*[^-]){', STR(((35 - ?templateMotifSequenceMatchBeginPositionP0AC8877) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_0095578, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_0095578) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_0095578, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_0095578, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_0095578) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_0095578, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) . BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0095579) - 1) AS ?thisPositionOn13) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_0095576, 1, (STRLEN(?templateMotifCigarP0AC88MF_0095576) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_0095576, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP0AC8877) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_0095578, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_0095578) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_0095578, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_0095578, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_0095578) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_0095578, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) . BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0095579) - 1) AS ?thisPositionOn14) . BIND(?this AS ?pfs1t92) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) . FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]GQD', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) . BIND(URI(CONCAT(STR(?this), '#MF_00955a9')) AS ?annotation9) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionP0AC8898 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88100 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AC88MF_0095593 . ?templateMotifSequenceMatchRegionP0AC8898 faldo:begin ?templateMotifSequenceMatchBeginP0AC8899 . ?templateMotifSequenceMatchBeginP0AC8899 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC8894 ; faldo:reference isoform:P0AC88-1 . ?templateMotifSequenceProfileAlignmentOperationP0AC88100 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . ?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955104 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AC88MF_0095595 . ?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955103 . ?targetMotifMatchRegionMatchBeginMF_00955103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0095596 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00955104 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_0095593, 1, (STRLEN(?templateMotifCigarP0AC88MF_0095593) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_0095593, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP0AC8894) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_0095595, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_0095595) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_0095595, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_0095595, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_0095595) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_0095595, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) . BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0095596) - 1) AS ?thisPositionOn20) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_0095593, 1, (STRLEN(?templateMotifCigarP0AC88MF_0095593) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_0095593, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP0AC8894) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_0095595, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_0095595) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_0095595, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_0095595, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_0095595) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_0095595, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) . BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0095596) - 1) AS ?thisPositionOn21) . BIND(?this AS ?pfs1t109) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) . FILTER (REGEX('D[LMIV]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) . BIND(URI(CONCAT(STR(?this), '#MF_00955a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionP0AC88115 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88117 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AC88MF_00955110 . ?templateMotifSequenceMatchRegionP0AC88115 faldo:begin ?templateMotifSequenceMatchBeginP0AC88116 . ?templateMotifSequenceMatchBeginP0AC88116 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC88111 ; faldo:reference isoform:P0AC88-1 . ?templateMotifSequenceProfileAlignmentOperationP0AC88117 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . ?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955121 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AC88MF_00955112 . ?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955120 . ?targetMotifMatchRegionMatchBeginMF_00955120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00955113 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00955121 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955110, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955110) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955110, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionP0AC88111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955112, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955112) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955112, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955112) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) . BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_00955113) - 1) AS ?thisPositionOn27) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955110, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955110) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955110, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionP0AC88111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955112, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955112) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955112, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955112) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) . BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_00955113) - 1) AS ?thisPositionOn28) . BIND(?this AS ?pfs1t126) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) . FILTER (REGEX('L[ARNDCQEGHILKMFPSTWYVBZJUOX][AG][ARNDCQEGHILKMFPSTWYVBZJUOX][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) . BIND(URI(CONCAT(STR(?this), '#MF_00955a23')) AS ?annotation23) . BIND(?this AS ?pfs22) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP0AC88132 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88134 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AC88MF_00955127 . ?templateMotifSequenceMatchRegionP0AC88132 faldo:begin ?templateMotifSequenceMatchBeginP0AC88133 . ?templateMotifSequenceMatchBeginP0AC88133 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC88128 ; faldo:reference isoform:P0AC88-1 . ?templateMotifSequenceProfileAlignmentOperationP0AC88134 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . ?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955138 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AC88MF_00955129 . ?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955137 . ?targetMotifMatchRegionMatchBeginMF_00955137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00955130 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00955138 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955127, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955127) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955127, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP0AC88128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955129, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955129) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955129, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955129) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) . BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_00955130) - 1) AS ?thisPositionOn33) . BIND(?thisPositionOn33 AS ?thisPositionOn34) . BIND(?this AS ?pfs1t141) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) . FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00955a30')) AS ?annotation30) . BIND(?this AS ?pfs29) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch146 faldo:location ?templateMotifSequenceMatchRegionP0AC88147 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88149 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AC88MF_00955142 . ?templateMotifSequenceMatchRegionP0AC88147 faldo:begin ?templateMotifSequenceMatchBeginP0AC88148 . ?templateMotifSequenceMatchBeginP0AC88148 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC88143 ; faldo:reference isoform:P0AC88-1 . ?templateMotifSequenceProfileAlignmentOperationP0AC88149 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . ?targetMotifMatch150 faldo:location ?targetMotifMatchRegionMatch151 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955153 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AC88MF_00955144 . ?targetMotifMatchRegionMatch151 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955152 . ?targetMotifMatchRegionMatchBeginMF_00955152 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00955145 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00955153 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955142, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955142) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955142, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP0AC88143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955144, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955144) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955144, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955144) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) . BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_00955145) - 1) AS ?thisPositionOn39) . BIND(?thisPositionOn39 AS ?thisPositionOn40) . BIND(?this AS ?pfs1t156) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00955a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch161 faldo:location ?templateMotifSequenceMatchRegionP0AC88162 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88164 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AC88MF_00955157 . ?templateMotifSequenceMatchRegionP0AC88162 faldo:begin ?templateMotifSequenceMatchBeginP0AC88163 . ?templateMotifSequenceMatchBeginP0AC88163 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC88158 ; faldo:reference isoform:P0AC88-1 . ?templateMotifSequenceProfileAlignmentOperationP0AC88164 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . ?targetMotifMatch165 faldo:location ?targetMotifMatchRegionMatch166 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955168 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AC88MF_00955159 . ?targetMotifMatchRegionMatch166 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955167 . ?targetMotifMatchRegionMatchBeginMF_00955167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00955160 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00955168 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955157, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955157) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955157, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionP0AC88158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955159, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955159) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955159, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955159) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) . BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_00955160) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs1t171) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_00955a42')) AS ?annotation42) . BIND(?this AS ?pfs41) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch176 faldo:location ?templateMotifSequenceMatchRegionP0AC88177 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88179 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AC88MF_00955172 . ?templateMotifSequenceMatchRegionP0AC88177 faldo:begin ?templateMotifSequenceMatchBeginP0AC88178 . ?templateMotifSequenceMatchBeginP0AC88178 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC88173 ; faldo:reference isoform:P0AC88-1 . ?templateMotifSequenceProfileAlignmentOperationP0AC88179 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . ?targetMotifMatch180 faldo:location ?targetMotifMatchRegionMatch181 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955183 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AC88MF_00955174 . ?targetMotifMatchRegionMatch181 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955182 . ?targetMotifMatchRegionMatchBeginMF_00955182 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00955175 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00955183 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955172, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955172) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955172, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionP0AC88173) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955174, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955174) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955174, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955174) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) . BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_00955175) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs1t186) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_00955a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch191 faldo:location ?templateMotifSequenceMatchRegionP0AC88192 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88194 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AC88MF_00955187 . ?templateMotifSequenceMatchRegionP0AC88192 faldo:begin ?templateMotifSequenceMatchBeginP0AC88193 . ?templateMotifSequenceMatchBeginP0AC88193 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC88188 ; faldo:reference isoform:P0AC88-1 . ?templateMotifSequenceProfileAlignmentOperationP0AC88194 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . ?targetMotifMatch195 faldo:location ?targetMotifMatchRegionMatch196 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955198 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AC88MF_00955189 . ?targetMotifMatchRegionMatch196 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955197 . ?targetMotifMatchRegionMatchBeginMF_00955197 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00955190 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00955198 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955187, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955187) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955187, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionP0AC88188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1199) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955189, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955189) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955189, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955189) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), '')))), '[^-]', ''))) AS ?step2200) . BIND(((?step2200 + ?targetMotifMatchRegionMatchBeginPositionMF_00955190) - 1) AS ?thisPositionOn59) . BIND(?thisPositionOn59 AS ?thisPositionOn60) . BIND(?this AS ?pfs1t201) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00955a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch206 faldo:location ?templateMotifSequenceMatchRegionP0AC88207 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88209 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AC88MF_00955202 . ?templateMotifSequenceMatchRegionP0AC88207 faldo:begin ?templateMotifSequenceMatchBeginP0AC88208 . ?templateMotifSequenceMatchBeginP0AC88208 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC88203 ; faldo:reference isoform:P0AC88-1 . ?templateMotifSequenceProfileAlignmentOperationP0AC88209 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . ?targetMotifMatch210 faldo:location ?targetMotifMatchRegionMatch211 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955213 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AC88MF_00955204 . ?targetMotifMatchRegionMatch211 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955212 . ?targetMotifMatchRegionMatchBeginMF_00955212 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00955205 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00955213 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955202, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955202) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955202, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionP0AC88203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955204, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955204) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955204, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955204) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) . BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_00955205) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs1t216) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00955a62')) AS ?annotation62) . BIND(?this AS ?pfs61) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch221 faldo:location ?templateMotifSequenceMatchRegionP0AC88222 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AC88224 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0AC88MF_00955217 . ?templateMotifSequenceMatchRegionP0AC88222 faldo:begin ?templateMotifSequenceMatchBeginP0AC88223 . ?templateMotifSequenceMatchBeginP0AC88223 faldo:position ?templateMotifSequenceMatchBeginPositionP0AC88218 ; faldo:reference isoform:P0AC88-1 . ?templateMotifSequenceProfileAlignmentOperationP0AC88224 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . ?targetMotifMatch225 faldo:location ?targetMotifMatchRegionMatch226 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00955228 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0AC88MF_00955219 . ?targetMotifMatchRegionMatch226 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00955227 . ?targetMotifMatchRegionMatchBeginMF_00955227 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00955220 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00955228 edam:has_input signature:MF_00955 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AC88MF_00955217, 1, (STRLEN(?templateMotifCigarP0AC88MF_00955217) - STRLEN(REPLACE(?templateMotifCigarP0AC88MF_00955217, CONCAT('^(?:-*[^-]){', STR(((220 - ?templateMotifSequenceMatchBeginPositionP0AC88218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955219, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955219) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AC88MF_00955219, 1, (STRLEN(?targetMotifMatchCigarP0AC88MF_00955219) - STRLEN(REPLACE(?targetMotifMatchCigarP0AC88MF_00955219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) . BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_00955220) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs1t231) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00955a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } }