CONSTRUCT { _:439541 up:source unirule:MF_01262 . _:439542 up:source unirule:MF_01262 . _:439543 up:source unirule:MF_01262 . _:439544 up:source unirule:MF_01262 . _:439545 up:source unirule:MF_01262 . _:439546 up:source unirule:MF_01262 . _:439547 up:source unirule:MF_01262 . _:439548 up:source unirule:MF_01262 . _:439549 up:source unirule:MF_01262 . _:439550 up:source unirule:MF_01262 . _:439551 up:source unirule:MF_01262 . _:439552 up:source unirule:MF_01262 . _:439553 up:source unirule:MF_01262 . _:439554 up:source unirule:MF_01262 . _:439555 up:source unirule:MF_01262 . _:439556 up:source unirule:MF_01262 . _:439557 up:source unirule:MF_01262 . _:439558 up:source unirule:MF_01262 . _:439559 up:source unirule:MF_01262 . _:439560 up:source unirule:MF_01262 . _:439561 up:source unirule:MF_01262 . _:439562 up:source unirule:MF_01262 . _:439563 up:source unirule:MF_01262 . _:439564 up:source unirule:MF_01262 . _:439565 up:source unirule:MF_01262 . _:439566 up:source unirule:MF_01262 . _:439567 up:source unirule:MF_01262 . _:439568 up:source unirule:MF_01262 . _:439569 up:source unirule:MF_01262 . _:439570 up:source unirule:MF_01262 . _:439571 up:source unirule:MF_01262 . _:439572 up:source unirule:MF_01262 . _:439573 up:source unirule:MF_01262 . _:439574 up:source unirule:MF_01262 . _:439575 up:source unirule:MF_01262 . _:439576 up:source unirule:MF_01262 . _:439577 up:source unirule:MF_01262 . _:439578 up:source unirule:MF_01262 . _:439579 up:source unirule:MF_01262 . _:439580 up:source unirule:MF_01262 . ?this up:alternativeName ?name1 , ?name2 , ?name3 , ?name4 , ?name5 ; up:annotation ?annotation7 , ?annotation8 , ?annotation10 , ?annotation12 , ?annotation13 , ?annotation14 ; up:classifiedWith GO:0000049 , GO:0000166 , GO:0000287 , GO:0001680 , GO:0004810 , GO:0005524 , keyword:460 , keyword:479 , keyword:547 , keyword:548 , keyword:67 , keyword:692 , keyword:694 , keyword:808 , keyword:819 ; up:recommendedName ?name0 . ?name0 up:ecName '2.7.7.72' ; up:fullName 'CCA-adding enzyme' ; rdf:type up:Structured_Name . ?name1 up:fullName 'CCA tRNA nucleotidyltransferase' ; rdf:type up:Structured_Name . ?name2 up:fullName 'tRNA CCA-pyrophosphorylase' ; rdf:type up:Structured_Name . ?name3 up:fullName 'tRNA adenylyl-/cytidylyl- transferase' ; rdf:type up:Structured_Name . ?name4 up:fullName 'tRNA nucleotidyltransferase' ; rdf:type up:Structured_Name . ?name5 up:fullName 'tRNA-NT' ; rdf:type up:Structured_Name . ?gene6 skos:prefLabel 'cca' . ?annotation7 a up:Function_Annotation ; rdfs:comment "Catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. tRNA 3'-terminal CCA addition is required both for tRNA processing and repair. Also involved in tRNA surveillance by mediating tandem CCA addition to generate a CCACCA at the 3' terminus of unstable tRNAs. While stable tRNAs receive only 3'-terminal CCA, unstable tRNAs are marked with CCACCA and rapidly degraded." . ?annotation8 up:activity ?activity9 ; rdf:type up:Catalytic_Activity_Annotation . ?activity9 up:catalyticActivity <http://rdf.rhea-db.org/14433>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.7.72>. ?annotation10 up:activity ?activity11 ; rdf:type up:Catalytic_Activity_Annotation . ?activity11 up:catalyticActivity <http://rdf.rhea-db.org/76235>. ?annotation12 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation . ?annotation13 a up:Annotation ; rdfs:comment 'A single active site specifically recognizes both ATP and CTP and is responsible for their addition.' . ?annotation14 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. Bacterial CCA-adding enzyme type 2 subfamily.' . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; up:ligand ?ligand19 ; rdf:type up:Binding_Site_Annotation . ?pfsb17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?ligand19 rdfs:subClassOf chebi:18420 . ?pfs22 up:annotation ?annotation23 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; up:ligand ?ligand26 ; rdf:type up:Binding_Site_Annotation . ?pfsb24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?ligand26 rdfs:subClassOf chebi:18420 . ?pfs29 up:annotation ?annotation30 . ?annotation30 faldo:begin ?pfsb31 ; faldo:end ?pfse32 ; up:ligand ?ligand33 ; rdf:type up:Binding_Site_Annotation . ?pfsb31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?ligand33 rdfs:subClassOf chebi:30616 . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; up:ligand ?ligand40 ; rdf:type up:Binding_Site_Annotation . ?pfsb38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?ligand40 rdfs:subClassOf chebi:37563 . ?pfs43 up:annotation ?annotation44 . ?annotation44 faldo:begin ?pfsb45 ; faldo:end ?pfse46 ; up:ligand ?ligand47 ; rdf:type up:Binding_Site_Annotation . ?pfsb45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?ligand47 rdfs:subClassOf chebi:30616 . ?pfs50 up:annotation ?annotation51 . ?annotation51 faldo:begin ?pfsb52 ; faldo:end ?pfse53 ; up:ligand ?ligand54 ; rdf:type up:Binding_Site_Annotation . ?pfsb52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?pfse53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?ligand54 rdfs:subClassOf chebi:37563 . ?pfs57 up:annotation ?annotation58 . ?annotation58 faldo:begin ?pfsb59 ; faldo:end ?pfse60 ; up:ligand ?ligand61 ; rdf:type up:Binding_Site_Annotation . ?pfsb59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?pfse60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?ligand61 rdfs:subClassOf chebi:30616 . ?pfs64 up:annotation ?annotation65 . ?annotation65 faldo:begin ?pfsb66 ; faldo:end ?pfse67 ; up:ligand ?ligand68 ; rdf:type up:Binding_Site_Annotation . ?pfsb66 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?pfse67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?ligand68 rdfs:subClassOf chebi:37563 . ?pfs71 up:annotation ?annotation72 . ?annotation72 faldo:begin ?pfsb73 ; faldo:end ?pfse74 ; up:ligand ?ligand75 ; rdf:type up:Binding_Site_Annotation . ?pfsb73 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?pfse74 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?ligand75 rdfs:subClassOf chebi:30616 . ?pfs78 up:annotation ?annotation79 . ?annotation79 faldo:begin ?pfsb80 ; faldo:end ?pfse81 ; up:ligand ?ligand82 ; rdf:type up:Binding_Site_Annotation . ?pfsb80 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?pfse81 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?ligand82 rdfs:subClassOf chebi:37563 . ?pfs85 up:annotation ?annotation86 . ?annotation86 faldo:begin ?pfsb87 ; faldo:end ?pfse88 ; up:ligand ?ligand89 ; rdf:type up:Binding_Site_Annotation . ?pfsb87 faldo:position ?thisPositionOn90 ; rdf:type faldo:ExactPosition . ?pfse88 faldo:position ?thisPositionOn91 ; rdf:type faldo:ExactPosition . ?ligand89 rdfs:subClassOf chebi:30616 . ?pfs92 up:annotation ?annotation93 . ?annotation93 faldo:begin ?pfsb94 ; faldo:end ?pfse95 ; up:ligand ?ligand96 ; rdf:type up:Binding_Site_Annotation . ?pfsb94 faldo:position ?thisPositionOn97 ; rdf:type faldo:ExactPosition . ?pfse95 faldo:position ?thisPositionOn98 ; rdf:type faldo:ExactPosition . ?ligand96 rdfs:subClassOf chebi:37563 . _:439581 a rdf:Statement ; up:attribution _:439541 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:439582 a rdf:Statement ; up:attribution _:439542 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:439583 a rdf:Statement ; up:attribution _:439543 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:439584 a rdf:Statement ; up:attribution _:439544 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name3 . _:439585 a rdf:Statement ; up:attribution _:439545 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name4 . _:439586 a rdf:Statement ; up:attribution _:439546 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name5 . _:439587 a rdf:Statement ; up:attribution _:439547 ; rdf:subject ?gene6 ; rdf:predicate up:encodedBy ; rdf:object ?gene6 . _:439588 a rdf:Statement ; up:attribution _:439548 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:439589 a rdf:Statement ; up:attribution _:439549 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:439590 a rdf:Statement ; up:attribution _:439550 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:439591 a rdf:Statement ; up:attribution _:439551 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:439592 a rdf:Statement ; up:attribution _:439552 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:439593 a rdf:Statement ; up:attribution _:439553 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:439594 a rdf:Statement ; up:attribution _:439554 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:439595 a rdf:Statement ; up:attribution _:439555 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:439596 a rdf:Statement ; up:attribution _:439556 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:439597 a rdf:Statement ; up:attribution _:439557 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:439598 a rdf:Statement ; up:attribution _:439558 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:548 . _:439599 a rdf:Statement ; up:attribution _:439559 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:692 . _:439600 a rdf:Statement ; up:attribution _:439560 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:439601 a rdf:Statement ; up:attribution _:439561 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:439602 a rdf:Statement ; up:attribution _:439562 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:819 . _:439603 a rdf:Statement ; up:attribution _:439563 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000049 . _:439604 a rdf:Statement ; up:attribution _:439564 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000166 . _:439605 a rdf:Statement ; up:attribution _:439565 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:439606 a rdf:Statement ; up:attribution _:439566 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004810 . _:439607 a rdf:Statement ; up:attribution _:439567 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:439608 a rdf:Statement ; up:attribution _:439568 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0001680 . _:439609 a rdf:Statement ; up:source unirule:MF_01262 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:439610 a rdf:Statement ; up:attribution _:439569 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:439611 a rdf:Statement ; up:source unirule:MF_01262 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:439612 a rdf:Statement ; up:attribution _:439570 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:439613 a rdf:Statement ; up:source unirule:MF_01262 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:439614 a rdf:Statement ; up:attribution _:439571 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:439615 a rdf:Statement ; up:source unirule:MF_01262 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:439616 a rdf:Statement ; up:attribution _:439572 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:439617 a rdf:Statement ; up:source unirule:MF_01262 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:439618 a rdf:Statement ; up:attribution _:439573 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:439619 a rdf:Statement ; up:source unirule:MF_01262 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:439620 a rdf:Statement ; up:attribution _:439574 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:439621 a rdf:Statement ; up:source unirule:MF_01262 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:439622 a rdf:Statement ; up:attribution _:439575 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:439623 a rdf:Statement ; up:source unirule:MF_01262 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:439624 a rdf:Statement ; up:attribution _:439576 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:439625 a rdf:Statement ; up:source unirule:MF_01262 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:439626 a rdf:Statement ; up:attribution _:439577 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:439627 a rdf:Statement ; up:source unirule:MF_01262 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:439628 a rdf:Statement ; up:attribution _:439578 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:439629 a rdf:Statement ; up:source unirule:MF_01262 ; rdf:subject ?pfs85 ; rdf:predicate up:annotation ; rdf:object ?annotation86 . _:439630 a rdf:Statement ; up:attribution _:439579 ; rdf:subject ?pfs85 ; rdf:predicate up:annotation ; rdf:object ?annotation86 . _:439631 a rdf:Statement ; up:source unirule:MF_01262 ; rdf:subject ?pfs92 ; rdf:predicate up:annotation ; rdf:object ?annotation93 . _:439632 a rdf:Statement ; up:attribution _:439580 ; rdf:subject ?pfs92 ; rdf:predicate up:annotation ; rdf:object ?annotation93 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01262 #Rule MF_01262 Created by:coudert on:2005-07-29 Modified by:crivoire on:2023-05-17 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01262 . ?thisOrganism rdfs:subClassOf+ taxon:1224 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_01261 . })) . BIND(URI(CONCAT(STR(?this), '#MF_01262a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01262a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01262a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_01262a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_01262a4')) AS ?name4) . BIND(URI(CONCAT(STR(?this), '#MF_01262a5')) AS ?name5) . BIND(URI(CONCAT(STR(?this), '#MF_01262a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01262a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_01262a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_01262a12')) AS ?annotation12) . BIND(URI(CONCAT(STR(?this), '#MF_01262a13')) AS ?annotation13) . BIND(URI(CONCAT(STR(?this), '#MF_01262a14')) AS ?annotation14) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionP57169104 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169106 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP57169MF_0126299 . ?templateMotifSequenceMatchRegionP57169104 faldo:begin ?templateMotifSequenceMatchBeginP57169105 . ?templateMotifSequenceMatchBeginP57169105 faldo:position ?templateMotifSequenceMatchBeginPositionP57169100 ; faldo:reference isoform:P57169-1 . ?templateMotifSequenceProfileAlignmentOperationP57169106 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . ?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262110 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP57169MF_01262101 . ?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262109 . ?targetMotifMatchRegionMatchBeginMF_01262109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262102 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01262110 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_0126299, 1, (STRLEN(?templateMotifCigarP57169MF_0126299) - STRLEN(REPLACE(?templateMotifCigarP57169MF_0126299, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP57169100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262101, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262101) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262101, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262101) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) . BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_01262102) - 1) AS ?thisPositionOn20) . BIND(?thisPositionOn20 AS ?thisPositionOn21) . BIND(?this AS ?pfs1t113) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) . FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01262a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionP57169119 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169121 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP57169MF_01262114 . ?templateMotifSequenceMatchRegionP57169119 faldo:begin ?templateMotifSequenceMatchBeginP57169120 . ?templateMotifSequenceMatchBeginP57169120 faldo:position ?templateMotifSequenceMatchBeginPositionP57169115 ; faldo:reference isoform:P57169-1 . ?templateMotifSequenceProfileAlignmentOperationP57169121 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . ?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262125 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP57169MF_01262116 . ?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262124 . ?targetMotifMatchRegionMatchBeginMF_01262124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262117 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01262125 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262114, 1, (STRLEN(?templateMotifCigarP57169MF_01262114) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262114, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP57169115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262116, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262116) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262116, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262116) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) . BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_01262117) - 1) AS ?thisPositionOn27) . BIND(?thisPositionOn27 AS ?thisPositionOn28) . BIND(?this AS ?pfs1t128) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01262a23')) AS ?annotation23) . BIND(?this AS ?pfs22) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP57169134 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169136 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP57169MF_01262129 . ?templateMotifSequenceMatchRegionP57169134 faldo:begin ?templateMotifSequenceMatchBeginP57169135 . ?templateMotifSequenceMatchBeginP57169135 faldo:position ?templateMotifSequenceMatchBeginPositionP57169130 ; faldo:reference isoform:P57169-1 . ?templateMotifSequenceProfileAlignmentOperationP57169136 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . ?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262140 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP57169MF_01262131 . ?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262139 . ?targetMotifMatchRegionMatchBeginMF_01262139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262132 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01262140 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262129, 1, (STRLEN(?templateMotifCigarP57169MF_01262129) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262129, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP57169130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262131, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262131) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262131, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262131) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) . BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_01262132) - 1) AS ?thisPositionOn34) . BIND(?thisPositionOn34 AS ?thisPositionOn35) . BIND(?this AS ?pfs1t143) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_01262a30')) AS ?annotation30) . BIND(?this AS ?pfs29) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP57169149 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169151 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP57169MF_01262144 . ?templateMotifSequenceMatchRegionP57169149 faldo:begin ?templateMotifSequenceMatchBeginP57169150 . ?templateMotifSequenceMatchBeginP57169150 faldo:position ?templateMotifSequenceMatchBeginPositionP57169145 ; faldo:reference isoform:P57169-1 . ?templateMotifSequenceProfileAlignmentOperationP57169151 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . ?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262155 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP57169MF_01262146 . ?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262154 . ?targetMotifMatchRegionMatchBeginMF_01262154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262147 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01262155 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262144, 1, (STRLEN(?templateMotifCigarP57169MF_01262144) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262144, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP57169145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262146, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262146) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262146, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262146) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) . BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_01262147) - 1) AS ?thisPositionOn41) . BIND(?thisPositionOn41 AS ?thisPositionOn42) . BIND(?this AS ?pfs1t158) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_01262a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionP57169164 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169166 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP57169MF_01262159 . ?templateMotifSequenceMatchRegionP57169164 faldo:begin ?templateMotifSequenceMatchBeginP57169165 . ?templateMotifSequenceMatchBeginP57169165 faldo:position ?templateMotifSequenceMatchBeginPositionP57169160 ; faldo:reference isoform:P57169-1 . ?templateMotifSequenceProfileAlignmentOperationP57169166 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . ?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262170 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP57169MF_01262161 . ?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262169 . ?targetMotifMatchRegionMatchBeginMF_01262169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262162 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01262170 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262159, 1, (STRLEN(?templateMotifCigarP57169MF_01262159) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262159, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP57169160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262161, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262161) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262161, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262161) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) . BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_01262162) - 1) AS ?thisPositionOn48) . BIND(?thisPositionOn48 AS ?thisPositionOn49) . BIND(?this AS ?pfs1t173) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01262a44')) AS ?annotation44) . BIND(?this AS ?pfs43) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionP57169179 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169181 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP57169MF_01262174 . ?templateMotifSequenceMatchRegionP57169179 faldo:begin ?templateMotifSequenceMatchBeginP57169180 . ?templateMotifSequenceMatchBeginP57169180 faldo:position ?templateMotifSequenceMatchBeginPositionP57169175 ; faldo:reference isoform:P57169-1 . ?templateMotifSequenceProfileAlignmentOperationP57169181 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . ?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262185 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP57169MF_01262176 . ?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262184 . ?targetMotifMatchRegionMatchBeginMF_01262184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262177 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01262185 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262174, 1, (STRLEN(?templateMotifCigarP57169MF_01262174) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262174, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP57169175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262176, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262176) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262176, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262176) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) . BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_01262177) - 1) AS ?thisPositionOn55) . BIND(?thisPositionOn55 AS ?thisPositionOn56) . BIND(?this AS ?pfs1t188) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01262a51')) AS ?annotation51) . BIND(?this AS ?pfs50) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch193 faldo:location ?templateMotifSequenceMatchRegionP57169194 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169196 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP57169MF_01262189 . ?templateMotifSequenceMatchRegionP57169194 faldo:begin ?templateMotifSequenceMatchBeginP57169195 . ?templateMotifSequenceMatchBeginP57169195 faldo:position ?templateMotifSequenceMatchBeginPositionP57169190 ; faldo:reference isoform:P57169-1 . ?templateMotifSequenceProfileAlignmentOperationP57169196 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . ?targetMotifMatch197 faldo:location ?targetMotifMatchRegionMatch198 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262200 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP57169MF_01262191 . ?targetMotifMatchRegionMatch198 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262199 . ?targetMotifMatchRegionMatchBeginMF_01262199 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262192 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01262200 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262189, 1, (STRLEN(?templateMotifCigarP57169MF_01262189) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262189, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP57169190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1201) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262191, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262191) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262191, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262191) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), '')))), '[^-]', ''))) AS ?step2202) . BIND(((?step2202 + ?targetMotifMatchRegionMatchBeginPositionMF_01262192) - 1) AS ?thisPositionOn62) . BIND(?thisPositionOn62 AS ?thisPositionOn63) . BIND(?this AS ?pfs1t203) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01262a58')) AS ?annotation58) . BIND(?this AS ?pfs57) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch208 faldo:location ?templateMotifSequenceMatchRegionP57169209 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169211 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP57169MF_01262204 . ?templateMotifSequenceMatchRegionP57169209 faldo:begin ?templateMotifSequenceMatchBeginP57169210 . ?templateMotifSequenceMatchBeginP57169210 faldo:position ?templateMotifSequenceMatchBeginPositionP57169205 ; faldo:reference isoform:P57169-1 . ?templateMotifSequenceProfileAlignmentOperationP57169211 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . ?targetMotifMatch212 faldo:location ?targetMotifMatchRegionMatch213 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262215 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP57169MF_01262206 . ?targetMotifMatchRegionMatch213 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262214 . ?targetMotifMatchRegionMatchBeginMF_01262214 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262207 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01262215 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262204, 1, (STRLEN(?templateMotifCigarP57169MF_01262204) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262204, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP57169205) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1216) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262206, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262206) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262206, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262206) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), '')))), '[^-]', ''))) AS ?step2217) . BIND(((?step2217 + ?targetMotifMatchRegionMatchBeginPositionMF_01262207) - 1) AS ?thisPositionOn69) . BIND(?thisPositionOn69 AS ?thisPositionOn70) . BIND(?this AS ?pfs1t218) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01262a65')) AS ?annotation65) . BIND(?this AS ?pfs64) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch223 faldo:location ?templateMotifSequenceMatchRegionP57169224 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169226 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP57169MF_01262219 . ?templateMotifSequenceMatchRegionP57169224 faldo:begin ?templateMotifSequenceMatchBeginP57169225 . ?templateMotifSequenceMatchBeginP57169225 faldo:position ?templateMotifSequenceMatchBeginPositionP57169220 ; faldo:reference isoform:P57169-1 . ?templateMotifSequenceProfileAlignmentOperationP57169226 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . ?targetMotifMatch227 faldo:location ?targetMotifMatchRegionMatch228 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262230 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP57169MF_01262221 . ?targetMotifMatchRegionMatch228 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262229 . ?targetMotifMatchRegionMatchBeginMF_01262229 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262222 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01262230 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262219, 1, (STRLEN(?templateMotifCigarP57169MF_01262219) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262219, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP57169220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262221, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262221) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262221, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262221) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) . BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_01262222) - 1) AS ?thisPositionOn76) . BIND(?thisPositionOn76 AS ?thisPositionOn77) . BIND(?this AS ?pfs1t233) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01262a72')) AS ?annotation72) . BIND(?this AS ?pfs71) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch238 faldo:location ?templateMotifSequenceMatchRegionP57169239 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169241 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP57169MF_01262234 . ?templateMotifSequenceMatchRegionP57169239 faldo:begin ?templateMotifSequenceMatchBeginP57169240 . ?templateMotifSequenceMatchBeginP57169240 faldo:position ?templateMotifSequenceMatchBeginPositionP57169235 ; faldo:reference isoform:P57169-1 . ?templateMotifSequenceProfileAlignmentOperationP57169241 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . ?targetMotifMatch242 faldo:location ?targetMotifMatchRegionMatch243 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262245 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP57169MF_01262236 . ?targetMotifMatchRegionMatch243 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262244 . ?targetMotifMatchRegionMatchBeginMF_01262244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262237 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01262245 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262234, 1, (STRLEN(?templateMotifCigarP57169MF_01262234) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262234, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP57169235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262236, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262236) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262236, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262236) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) . BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_01262237) - 1) AS ?thisPositionOn83) . BIND(?thisPositionOn83 AS ?thisPositionOn84) . BIND(?this AS ?pfs1t248) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb80) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse81) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01262a79')) AS ?annotation79) . BIND(?this AS ?pfs78) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch253 faldo:location ?templateMotifSequenceMatchRegionP57169254 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169256 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP57169MF_01262249 . ?templateMotifSequenceMatchRegionP57169254 faldo:begin ?templateMotifSequenceMatchBeginP57169255 . ?templateMotifSequenceMatchBeginP57169255 faldo:position ?templateMotifSequenceMatchBeginPositionP57169250 ; faldo:reference isoform:P57169-1 . ?templateMotifSequenceProfileAlignmentOperationP57169256 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . ?targetMotifMatch257 faldo:location ?targetMotifMatchRegionMatch258 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262260 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP57169MF_01262251 . ?targetMotifMatchRegionMatch258 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262259 . ?targetMotifMatchRegionMatchBeginMF_01262259 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262252 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01262260 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262249, 1, (STRLEN(?templateMotifCigarP57169MF_01262249) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262249, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP57169250) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1261) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262251, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262251) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262251, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262251) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), '')))), '[^-]', ''))) AS ?step2262) . BIND(((?step2262 + ?targetMotifMatchRegionMatchBeginPositionMF_01262252) - 1) AS ?thisPositionOn90) . BIND(?thisPositionOn90 AS ?thisPositionOn91) . BIND(?this AS ?pfs1t263) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb87) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse88) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn90, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01262a86')) AS ?annotation86) . BIND(?this AS ?pfs85) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch268 faldo:location ?templateMotifSequenceMatchRegionP57169269 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP57169271 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP57169MF_01262264 . ?templateMotifSequenceMatchRegionP57169269 faldo:begin ?templateMotifSequenceMatchBeginP57169270 . ?templateMotifSequenceMatchBeginP57169270 faldo:position ?templateMotifSequenceMatchBeginPositionP57169265 ; faldo:reference isoform:P57169-1 . ?templateMotifSequenceProfileAlignmentOperationP57169271 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . ?targetMotifMatch272 faldo:location ?targetMotifMatchRegionMatch273 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01262275 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP57169MF_01262266 . ?targetMotifMatchRegionMatch273 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01262274 . ?targetMotifMatchRegionMatchBeginMF_01262274 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01262267 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01262275 edam:has_input signature:MF_01262 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP57169MF_01262264, 1, (STRLEN(?templateMotifCigarP57169MF_01262264) - STRLEN(REPLACE(?templateMotifCigarP57169MF_01262264, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP57169265) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1276) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP57169MF_01262266, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262266) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP57169MF_01262266, 1, (STRLEN(?targetMotifMatchCigarP57169MF_01262266) - STRLEN(REPLACE(?targetMotifMatchCigarP57169MF_01262266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), '')))), '[^-]', ''))) AS ?step2277) . BIND(((?step2277 + ?targetMotifMatchRegionMatchBeginPositionMF_01262267) - 1) AS ?thisPositionOn97) . BIND(?thisPositionOn97 AS ?thisPositionOn98) . BIND(?this AS ?pfs1t278) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb94) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse95) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn97, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01262a93')) AS ?annotation93) . BIND(?this AS ?pfs92) . } }