CONSTRUCT { _:548800 up:source unirule:MF_01535 . _:548801 up:source unirule:MF_01535 . _:548802 up:source unirule:MF_01535 . _:548803 up:source unirule:MF_01535 . _:548804 up:source unirule:MF_01535 . _:548805 up:source unirule:MF_01535 . _:548806 up:source unirule:MF_01535 . _:548807 up:source unirule:MF_01535 . _:548808 up:source unirule:MF_01535 . _:548809 up:source unirule:MF_01535 . _:548810 up:source unirule:MF_01535 . _:548811 up:source unirule:MF_01535 . _:548812 up:source unirule:MF_01535 . _:548813 up:source unirule:MF_01535 . _:548814 up:source unirule:MF_01535 . _:548815 up:source unirule:MF_01535 . _:548816 up:source unirule:MF_01535 . _:548817 up:source unirule:MF_01535 . _:548818 up:source unirule:MF_01535 . _:548819 up:source unirule:MF_01535 . _:548820 up:source unirule:MF_01535 . _:548821 up:source unirule:MF_01535 . _:548822 up:source unirule:MF_01535 . _:548823 up:source unirule:MF_01535 . _:548824 up:source unirule:MF_01535 . _:548825 up:source unirule:MF_01535 . _:548826 up:source unirule:MF_01535 . _:548827 up:source unirule:MF_01535 . _:548828 up:source unirule:MF_01535 . _:548829 up:source unirule:MF_01535 . ?this up:alternativeName ?name1 , ?name2 , ?name3 ; up:annotation ?annotation5 , ?annotation6 , ?annotation8 , ?annotation9 , ?annotation10 ; up:classifiedWith GO:0008993 , GO:0019301 , keyword:418 , keyword:460 , keyword:547 , keyword:67 , keyword:684 , keyword:808 ; up:recommendedName ?name0 . ?name0 up:ecName '2.7.1.5' ; up:fullName 'Rhamnulokinase' ; up:shortName 'RhaB' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Rhamnulose kinase' ; rdf:type up:Structured_Name . ?name2 up:fullName 'L-rhamnulose 1-kinase' ; rdf:type up:Structured_Name . ?name3 up:fullName 'ATP:L-rhamnulose phosphotransferase' ; rdf:type up:Structured_Name . ?gene4 skos:prefLabel 'rhaB' . ?annotation5 a up:Function_Annotation ; rdfs:comment 'Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1-hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate.' . ?annotation6 up:activity ?activity7 ; rdf:type up:Catalytic_Activity_Annotation . ?activity7 up:catalyticActivity <http://rdf.rhea-db.org/20117>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.1.5>. ?annotation8 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation . ?annotation9 a up:Pathway_Annotation ; rdfs:comment 'Carbohydrate degradation; L-rhamnose degradation; glycerone phosphate from L-rhamnose: step 2/3.' . ?annotation10 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the rhamnulokinase family.' . ?case12 up:classifiedWith keyword:1015 . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; rdf:type up:Disulfide_Bond_Annotation . ?pfsb15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfs19 up:annotation ?annotation20 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; rdf:type up:Disulfide_Bond_Annotation . ?pfsb21 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfs25 up:annotation ?annotation26 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; rdf:type up:Disulfide_Bond_Annotation . ?pfsb27 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfs31 up:annotation ?annotation32 . ?annotation32 faldo:begin ?pfsb33 ; faldo:end ?pfse34 ; up:ligand ?ligand35 ; rdf:type up:Binding_Site_Annotation . ?pfsb33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?ligand35 rdfs:subClassOf chebi:30616 . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; up:ligand ?ligand42 ; rdf:type up:Binding_Site_Annotation . ?pfsb40 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?ligand42 rdfs:subClassOf ?molecule43 . ?molecule43 rdfs:label 'substrate' . ?pfs46 up:annotation ?annotation47 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor' . ?pfsb48 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfs52 up:annotation ?annotation53 . ?annotation53 faldo:begin ?pfsb54 ; faldo:end ?pfse55 ; up:ligand ?ligand56 ; rdf:type up:Binding_Site_Annotation . ?pfsb54 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfse55 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?ligand56 rdfs:subClassOf ?molecule57 . ?molecule57 rdfs:label 'substrate' . ?pfs60 up:annotation ?annotation61 . ?annotation61 faldo:begin ?pfsb62 ; faldo:end ?pfse63 ; up:ligand ?ligand64 ; rdf:type up:Binding_Site_Annotation . ?pfsb62 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?pfse63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?ligand64 rdfs:subClassOf chebi:30616 . ?pfs67 up:annotation ?annotation68 . ?annotation68 faldo:begin ?pfsb69 ; faldo:end ?pfse70 ; up:ligand ?ligand71 ; rdf:type up:Binding_Site_Annotation . ?pfsb69 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse70 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?ligand71 rdfs:subClassOf ?molecule72 . ?molecule72 rdfs:label 'substrate' . ?pfs75 up:annotation ?annotation76 . ?annotation76 faldo:begin ?pfsb77 ; faldo:end ?pfse78 ; up:ligand ?ligand79 ; rdf:type up:Binding_Site_Annotation . ?pfsb77 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?pfse78 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . ?ligand79 rdfs:subClassOf chebi:30616 . ?pfs82 up:annotation ?annotation83 . ?annotation83 faldo:begin ?pfsb84 ; faldo:end ?pfse85 ; up:ligand ?ligand86 ; rdf:type up:Binding_Site_Annotation . ?pfsb84 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?pfse85 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . ?ligand86 rdfs:subClassOf chebi:30616 . _:548830 a rdf:Statement ; up:attribution _:548800 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:548831 a rdf:Statement ; up:attribution _:548801 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:548832 a rdf:Statement ; up:attribution _:548802 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:548833 a rdf:Statement ; up:attribution _:548803 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name3 . _:548834 a rdf:Statement ; up:attribution _:548804 ; rdf:subject ?gene4 ; rdf:predicate up:encodedBy ; rdf:object ?gene4 . _:548835 a rdf:Statement ; up:attribution _:548805 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:548836 a rdf:Statement ; up:attribution _:548806 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:548837 a rdf:Statement ; up:attribution _:548807 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:548838 a rdf:Statement ; up:attribution _:548808 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:548839 a rdf:Statement ; up:attribution _:548809 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:548840 a rdf:Statement ; up:attribution _:548810 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:548841 a rdf:Statement ; up:attribution _:548811 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:418 . _:548842 a rdf:Statement ; up:attribution _:548812 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:548843 a rdf:Statement ; up:attribution _:548813 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:548844 a rdf:Statement ; up:attribution _:548814 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:684 . _:548845 a rdf:Statement ; up:attribution _:548815 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:548846 a rdf:Statement ; up:attribution _:548816 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008993 . _:548847 a rdf:Statement ; up:attribution _:548817 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019301 . _:548848 a rdf:Statement ; up:attribution _:548818 ; rdf:subject ?case12 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1015 . _:548849 a rdf:Statement ; up:source unirule:MF_01535 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:548850 a rdf:Statement ; up:attribution _:548819 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:548851 a rdf:Statement ; up:source unirule:MF_01535 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:548852 a rdf:Statement ; up:attribution _:548820 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:548853 a rdf:Statement ; up:source unirule:MF_01535 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:548854 a rdf:Statement ; up:attribution _:548821 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:548855 a rdf:Statement ; up:source unirule:MF_01535 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:548856 a rdf:Statement ; up:attribution _:548822 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:548857 a rdf:Statement ; up:source unirule:MF_01535 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:548858 a rdf:Statement ; up:attribution _:548823 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:548859 a rdf:Statement ; up:source unirule:MF_01535 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:548860 a rdf:Statement ; up:attribution _:548824 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:548861 a rdf:Statement ; up:source unirule:MF_01535 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:548862 a rdf:Statement ; up:attribution _:548825 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:548863 a rdf:Statement ; up:source unirule:MF_01535 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:548864 a rdf:Statement ; up:attribution _:548826 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:548865 a rdf:Statement ; up:source unirule:MF_01535 ; rdf:subject ?pfs67 ; rdf:predicate up:annotation ; rdf:object ?annotation68 . _:548866 a rdf:Statement ; up:attribution _:548827 ; rdf:subject ?pfs67 ; rdf:predicate up:annotation ; rdf:object ?annotation68 . _:548867 a rdf:Statement ; up:source unirule:MF_01535 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:548868 a rdf:Statement ; up:attribution _:548828 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:548869 a rdf:Statement ; up:source unirule:MF_01535 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:548870 a rdf:Statement ; up:attribution _:548829 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01535 #Rule MF_01535 Created by:rivoire on:2005-03-29 Modified by:crivoire on:2024-03-12 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01535 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_01535a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01535a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01535a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_01535a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_01535a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01535a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01535a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_01535a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_01535a10')) AS ?annotation10) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionP3217194 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3217196 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32171MF_0153589 . ?templateMotifSequenceMatchRegionP3217194 faldo:begin ?templateMotifSequenceMatchBeginP3217195 . ?templateMotifSequenceMatchBeginP3217195 faldo:position ?templateMotifSequenceMatchBeginPositionP3217190 ; faldo:reference isoform:P32171-1 . ?templateMotifSequenceProfileAlignmentOperationP3217196 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . ?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535100 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32171MF_0153591 . ?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0153599 . ?targetMotifMatchRegionMatchBeginMF_0153599 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0153592 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01535100 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFT_11) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_0153589, 1, (STRLEN(?templateMotifCigarP32171MF_0153589) - STRLEN(REPLACE(?templateMotifCigarP32171MF_0153589, CONCAT('^(?:-*[^-]){', STR(((413 - ?templateMotifSequenceMatchBeginPositionP3217190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_0153591, 1, (STRLEN(?targetMotifMatchCigarP32171MF_0153591) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_0153591, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_0153591, 1, (STRLEN(?targetMotifMatchCigarP32171MF_0153591) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_0153591, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) . BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0153592) - 1) AS ?thisPositionOn17) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_0153589, 1, (STRLEN(?templateMotifCigarP32171MF_0153589) - STRLEN(REPLACE(?templateMotifCigarP32171MF_0153589, CONCAT('^(?:-*[^-]){', STR(((417 - ?templateMotifSequenceMatchBeginPositionP3217190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_0153591, 1, (STRLEN(?targetMotifMatchCigarP32171MF_0153591) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_0153591, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_0153591, 1, (STRLEN(?targetMotifMatchCigarP32171MF_0153591) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_0153591, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) . BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0153592) - 1) AS ?thisPositionOn18) . BIND(?this AS ?pfs1t105) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) . FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) . BIND(URI(CONCAT(STR(?this), '#MF_01535a14')) AS ?annotation14) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch110 faldo:location ?templateMotifSequenceMatchRegionP32171111 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171113 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32171MF_01535106 . ?templateMotifSequenceMatchRegionP32171111 faldo:begin ?templateMotifSequenceMatchBeginP32171112 . ?templateMotifSequenceMatchBeginP32171112 faldo:position ?templateMotifSequenceMatchBeginPositionP32171107 ; faldo:reference isoform:P32171-1 . ?templateMotifSequenceProfileAlignmentOperationP32171113 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . ?targetMotifMatch114 faldo:location ?targetMotifMatchRegionMatch115 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535117 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32171MF_01535108 . ?targetMotifMatchRegionMatch115 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535116 . ?targetMotifMatchRegionMatchBeginMF_01535116 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535109 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01535117 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFT_10) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535106, 1, (STRLEN(?templateMotifCigarP32171MF_01535106) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535106, CONCAT('^(?:-*[^-]){', STR(((353 - ?templateMotifSequenceMatchBeginPositionP32171107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535108, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535108) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535108, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535108) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) . BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_01535109) - 1) AS ?thisPositionOn23) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535106, 1, (STRLEN(?templateMotifCigarP32171MF_01535106) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535106, CONCAT('^(?:-*[^-]){', STR(((370 - ?templateMotifSequenceMatchBeginPositionP32171107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535108, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535108) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535108, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535108) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) . BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_01535109) - 1) AS ?thisPositionOn24) . BIND(?this AS ?pfs2t122) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) . FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) . BIND(URI(CONCAT(STR(?this), '#MF_01535a20')) AS ?annotation20) . BIND(?this AS ?pfs19) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionP32171128 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171130 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32171MF_01535123 . ?templateMotifSequenceMatchRegionP32171128 faldo:begin ?templateMotifSequenceMatchBeginP32171129 . ?templateMotifSequenceMatchBeginP32171129 faldo:position ?templateMotifSequenceMatchBeginPositionP32171124 ; faldo:reference isoform:P32171-1 . ?templateMotifSequenceProfileAlignmentOperationP32171130 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . ?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535134 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32171MF_01535125 . ?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535133 . ?targetMotifMatchRegionMatchBeginMF_01535133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535126 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01535134 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFT_9) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535123, 1, (STRLEN(?templateMotifCigarP32171MF_01535123) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535123, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP32171124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535125, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535125) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535125, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535125) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) . BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_01535126) - 1) AS ?thisPositionOn29) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535123, 1, (STRLEN(?templateMotifCigarP32171MF_01535123) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535123, CONCAT('^(?:-*[^-]){', STR(((222 - ?templateMotifSequenceMatchBeginPositionP32171124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535125, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535125) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535125, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535125) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) . BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_01535126) - 1) AS ?thisPositionOn30) . BIND(?this AS ?pfs3t139) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) . FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)))) . BIND(URI(CONCAT(STR(?this), '#MF_01535a26')) AS ?annotation26) . BIND(?this AS ?pfs25) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionP32171145 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171147 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32171MF_01535140 . ?templateMotifSequenceMatchRegionP32171145 faldo:begin ?templateMotifSequenceMatchBeginP32171146 . ?templateMotifSequenceMatchBeginP32171146 faldo:position ?templateMotifSequenceMatchBeginPositionP32171141 ; faldo:reference isoform:P32171-1 . ?templateMotifSequenceProfileAlignmentOperationP32171147 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . ?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535151 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32171MF_01535142 . ?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535150 . ?targetMotifMatchRegionMatchBeginMF_01535150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535143 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01535151 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535140, 1, (STRLEN(?templateMotifCigarP32171MF_01535140) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535140, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionP32171141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535142, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535142) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535142, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535142) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) . BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_01535143) - 1) AS ?thisPositionOn36) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535140, 1, (STRLEN(?templateMotifCigarP32171MF_01535140) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535140, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP32171141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535142, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535142) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535142, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535142) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) . BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_01535143) - 1) AS ?thisPositionOn37) . BIND(?this AS ?pfs4t156) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) . FILTER (REGEX('A[ST][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)))) . BIND(URI(CONCAT(STR(?this), '#MF_01535a32')) AS ?annotation32) . BIND(?this AS ?pfs31) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch161 faldo:location ?templateMotifSequenceMatchRegionP32171162 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171164 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32171MF_01535157 . ?templateMotifSequenceMatchRegionP32171162 faldo:begin ?templateMotifSequenceMatchBeginP32171163 . ?templateMotifSequenceMatchBeginP32171163 faldo:position ?templateMotifSequenceMatchBeginPositionP32171158 ; faldo:reference isoform:P32171-1 . ?templateMotifSequenceProfileAlignmentOperationP32171164 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . ?targetMotifMatch165 faldo:location ?targetMotifMatchRegionMatch166 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535168 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32171MF_01535159 . ?targetMotifMatchRegionMatch166 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535167 . ?targetMotifMatchRegionMatchBeginMF_01535167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535160 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01535168 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535157, 1, (STRLEN(?templateMotifCigarP32171MF_01535157) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535157, CONCAT('^(?:-*[^-]){', STR(((236 - ?templateMotifSequenceMatchBeginPositionP32171158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535159, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535159) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535159, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535159) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) . BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_01535160) - 1) AS ?thisPositionOn44) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535157, 1, (STRLEN(?templateMotifCigarP32171MF_01535157) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535157, CONCAT('^(?:-*[^-]){', STR(((238 - ?templateMotifSequenceMatchBeginPositionP32171158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535159, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535159) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535159, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535159) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) . BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_01535160) - 1) AS ?thisPositionOn45) . BIND(?this AS ?pfs4t173) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse41) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, (?thisPositionOn45 - ?thisPositionOn44)) = 'HDT')) . BIND(URI(CONCAT(STR(?this), '#MF_01535a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionP32171179 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171181 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32171MF_01535174 . ?templateMotifSequenceMatchRegionP32171179 faldo:begin ?templateMotifSequenceMatchBeginP32171180 . ?templateMotifSequenceMatchBeginP32171180 faldo:position ?templateMotifSequenceMatchBeginPositionP32171175 ; faldo:reference isoform:P32171-1 . ?templateMotifSequenceProfileAlignmentOperationP32171181 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . ?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535185 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32171MF_01535176 . ?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535184 . ?targetMotifMatchRegionMatchBeginMF_01535184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535177 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01535185 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535174, 1, (STRLEN(?templateMotifCigarP32171MF_01535174) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535174, CONCAT('^(?:-*[^-]){', STR(((237 - ?templateMotifSequenceMatchBeginPositionP32171175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535176, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535176) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535176, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535176) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) . BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_01535177) - 1) AS ?thisPositionOn50) . BIND(?thisPositionOn50 AS ?thisPositionOn51) . BIND(?this AS ?pfs4t188) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse49) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01535a47')) AS ?annotation47) . BIND(?this AS ?pfs46) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch193 faldo:location ?templateMotifSequenceMatchRegionP32171194 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171196 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32171MF_01535189 . ?templateMotifSequenceMatchRegionP32171194 faldo:begin ?templateMotifSequenceMatchBeginP32171195 . ?templateMotifSequenceMatchBeginP32171195 faldo:position ?templateMotifSequenceMatchBeginPositionP32171190 ; faldo:reference isoform:P32171-1 . ?templateMotifSequenceProfileAlignmentOperationP32171196 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . ?targetMotifMatch197 faldo:location ?targetMotifMatchRegionMatch198 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535200 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32171MF_01535191 . ?targetMotifMatchRegionMatch198 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535199 . ?targetMotifMatchRegionMatchBeginMF_01535199 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535192 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01535200 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535189, 1, (STRLEN(?templateMotifCigarP32171MF_01535189) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535189, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP32171190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1201) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535191, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535191) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535191, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535191) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), '')))), '[^-]', ''))) AS ?step2202) . BIND(((?step2202 + ?targetMotifMatchRegionMatchBeginPositionMF_01535192) - 1) AS ?thisPositionOn58) . BIND(?thisPositionOn58 AS ?thisPositionOn59) . BIND(?this AS ?pfs4t203) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse55) . FILTER (REGEX('[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01535a53')) AS ?annotation53) . BIND(?this AS ?pfs52) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch208 faldo:location ?templateMotifSequenceMatchRegionP32171209 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171211 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32171MF_01535204 . ?templateMotifSequenceMatchRegionP32171209 faldo:begin ?templateMotifSequenceMatchBeginP32171210 . ?templateMotifSequenceMatchBeginP32171210 faldo:position ?templateMotifSequenceMatchBeginPositionP32171205 ; faldo:reference isoform:P32171-1 . ?templateMotifSequenceProfileAlignmentOperationP32171211 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . ?targetMotifMatch212 faldo:location ?targetMotifMatchRegionMatch213 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535215 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32171MF_01535206 . ?targetMotifMatchRegionMatch213 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535214 . ?targetMotifMatchRegionMatchBeginMF_01535214 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535207 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01535215 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535204, 1, (STRLEN(?templateMotifCigarP32171MF_01535204) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535204, CONCAT('^(?:-*[^-]){', STR(((259 - ?templateMotifSequenceMatchBeginPositionP32171205) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1216) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535206, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535206) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535206, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535206) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), '')))), '[^-]', ''))) AS ?step2217) . BIND(((?step2217 + ?targetMotifMatchRegionMatchBeginPositionMF_01535207) - 1) AS ?thisPositionOn65) . BIND(?thisPositionOn65 AS ?thisPositionOn66) . BIND(?this AS ?pfs4t218) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_01535a61')) AS ?annotation61) . BIND(?this AS ?pfs60) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch223 faldo:location ?templateMotifSequenceMatchRegionP32171224 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171226 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32171MF_01535219 . ?templateMotifSequenceMatchRegionP32171224 faldo:begin ?templateMotifSequenceMatchBeginP32171225 . ?templateMotifSequenceMatchBeginP32171225 faldo:position ?templateMotifSequenceMatchBeginPositionP32171220 ; faldo:reference isoform:P32171-1 . ?templateMotifSequenceProfileAlignmentOperationP32171226 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . ?targetMotifMatch227 faldo:location ?targetMotifMatchRegionMatch228 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535230 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32171MF_01535221 . ?targetMotifMatchRegionMatch228 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535229 . ?targetMotifMatchRegionMatchBeginMF_01535229 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535222 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01535230 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535219, 1, (STRLEN(?templateMotifCigarP32171MF_01535219) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535219, CONCAT('^(?:-*[^-]){', STR(((296 - ?templateMotifSequenceMatchBeginPositionP32171220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535221, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535221) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535221, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535221) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) . BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_01535222) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs4t233) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb69) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse70) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_01535a68')) AS ?annotation68) . BIND(?this AS ?pfs67) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch238 faldo:location ?templateMotifSequenceMatchRegionP32171239 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171241 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32171MF_01535234 . ?templateMotifSequenceMatchRegionP32171239 faldo:begin ?templateMotifSequenceMatchBeginP32171240 . ?templateMotifSequenceMatchBeginP32171240 faldo:position ?templateMotifSequenceMatchBeginPositionP32171235 ; faldo:reference isoform:P32171-1 . ?templateMotifSequenceProfileAlignmentOperationP32171241 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . ?targetMotifMatch242 faldo:location ?targetMotifMatchRegionMatch243 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535245 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32171MF_01535236 . ?targetMotifMatchRegionMatch243 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535244 . ?targetMotifMatchRegionMatchBeginMF_01535244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535237 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01535245 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535234, 1, (STRLEN(?templateMotifCigarP32171MF_01535234) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535234, CONCAT('^(?:-*[^-]){', STR(((304 - ?templateMotifSequenceMatchBeginPositionP32171235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535236, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535236) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535236, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535236) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) . BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_01535237) - 1) AS ?thisPositionOn80) . BIND(?thisPositionOn80 AS ?thisPositionOn81) . BIND(?this AS ?pfs4t248) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) . FILTER (REGEX('[QNE]', SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01535a76')) AS ?annotation76) . BIND(?this AS ?pfs75) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch253 faldo:location ?templateMotifSequenceMatchRegionP32171254 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171256 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32171MF_01535249 . ?templateMotifSequenceMatchRegionP32171254 faldo:begin ?templateMotifSequenceMatchBeginP32171255 . ?templateMotifSequenceMatchBeginP32171255 faldo:position ?templateMotifSequenceMatchBeginPositionP32171250 ; faldo:reference isoform:P32171-1 . ?templateMotifSequenceProfileAlignmentOperationP32171256 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . ?targetMotifMatch257 faldo:location ?targetMotifMatchRegionMatch258 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535260 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32171MF_01535251 . ?targetMotifMatchRegionMatch258 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535259 . ?targetMotifMatchRegionMatchBeginMF_01535259 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535252 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01535260 edam:has_input signature:MF_01535 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535249, 1, (STRLEN(?templateMotifCigarP32171MF_01535249) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535249, CONCAT('^(?:-*[^-]){', STR(((402 - ?templateMotifSequenceMatchBeginPositionP32171250) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1261) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535251, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535251) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535251, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535251) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), '')))), '[^-]', ''))) AS ?step2262) . BIND(((?step2262 + ?targetMotifMatchRegionMatchBeginPositionMF_01535252) - 1) AS ?thisPositionOn87) . BIND(?thisPositionOn87 AS ?thisPositionOn88) . BIND(?this AS ?pfs4t263) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_01535a83')) AS ?annotation83) . BIND(?this AS ?pfs82) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:561 . BIND(?this AS ?case11) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag264) . } BIND(IF((BOUND(?tagFT_9) || BOUND(?tagFT_10) || BOUND(?tagFT_11)), ?caseWithTag264, ?UNBOUND_VARIABLE) AS ?case12) . }