CONSTRUCT { _:566303 up:source unirule:MF_01588 . _:566304 up:source unirule:MF_01588 . _:566305 up:source unirule:MF_01588 . _:566306 up:source unirule:MF_01588 . _:566307 up:source unirule:MF_01588 . _:566308 up:source unirule:MF_01588 . _:566309 up:source unirule:MF_01588 . _:566310 up:source unirule:MF_01588 . _:566311 up:source unirule:MF_01588 . _:566312 up:source unirule:MF_01588 . _:566313 up:source unirule:MF_01588 . _:566314 up:source unirule:MF_01588 . _:566315 up:source unirule:MF_01588 . _:566316 up:source unirule:MF_01588 . _:566317 up:source unirule:MF_01588 . _:566318 up:source unirule:MF_01588 . _:566319 up:source unirule:MF_01588 . _:566320 up:source unirule:MF_01588 . _:566321 up:source unirule:MF_01588 . _:566322 up:source unirule:MF_01588 . _:566323 up:source unirule:MF_01588 . _:566324 up:source unirule:MF_01588 . _:566325 up:source unirule:MF_01588 . _:566326 up:source unirule:MF_01588 . _:566327 up:source unirule:MF_01588 . _:566328 up:source unirule:MF_01588 . _:566329 up:source unirule:MF_01588 . _:566330 up:source unirule:MF_01588 . _:566331 up:source unirule:MF_01588 . _:566332 up:source unirule:MF_01588 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 ; up:classifiedWith GO:0003911 , GO:0006259 , keyword:227 , keyword:234 , keyword:235 , keyword:436 , keyword:460 , keyword:464 , keyword:479 , keyword:520 , keyword:862 ; up:recommendedName ?name0 . ?name0 up:ecName '6.5.1.2' ; up:fullName 'DNA ligase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Polydeoxyribonucleotide synthase [NAD(+)]' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'ligA' . ?annotation3 a up:Function_Annotation ; rdfs:comment "DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA." . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:enzymeClass <http://purl.uniprot.org/enzyme/6.5.1.2>. ?annotation6 up:cofactor chebi:18420 , chebi:29035 ; rdf:type up:Cofactor_Annotation . ?annotation7 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the NAD-dependent DNA ligase family. LigA subfamily.' . ?pfs8 up:annotation ?annotation9 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; up:ligand ?ligand12 ; rdf:type up:Binding_Site_Annotation . ?pfsb10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?ligand12 rdfs:subClassOf chebi:57540 . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; up:ligand ?ligand19 ; rdf:type up:Binding_Site_Annotation . ?pfsb17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?ligand19 rdfs:subClassOf chebi:57540 . ?pfs22 up:annotation ?annotation23 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'N6-AMP-lysine intermediate' . ?pfsb24 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; up:ligand ?ligand32 ; rdf:type up:Binding_Site_Annotation . ?pfsb30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand32 rdfs:subClassOf chebi:29105 . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; up:ligand ?ligand39 ; rdf:type up:Binding_Site_Annotation . ?pfsb37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?ligand39 rdfs:subClassOf chebi:29105 . ?pfs42 up:annotation ?annotation43 . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; up:ligand ?ligand46 ; rdf:type up:Binding_Site_Annotation . ?pfsb44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?ligand46 rdfs:subClassOf chebi:29105 . ?pfs49 up:annotation ?annotation50 . ?annotation50 faldo:begin ?pfsb51 ; faldo:end ?pfse52 ; up:ligand ?ligand53 ; rdf:type up:Binding_Site_Annotation . ?pfsb51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfse52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?ligand53 rdfs:subClassOf chebi:29105 . ?pfs56 up:annotation ?annotation57 . ?annotation57 faldo:begin ?pfsb58 ; faldo:end ?pfse59 ; up:ligand ?ligand60 ; rdf:type up:Binding_Site_Annotation . ?pfsb58 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?pfse59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?ligand60 rdfs:subClassOf chebi:57540 . ?pfs63 up:annotation ?annotation64 . ?annotation64 faldo:begin ?pfsb65 ; faldo:end ?pfse66 ; up:ligand ?ligand67 ; rdf:type up:Binding_Site_Annotation . ?pfsb65 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?pfse66 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?ligand67 rdfs:subClassOf chebi:57540 . ?pfs70 up:annotation ?annotation71 . ?annotation71 faldo:begin ?pfsb72 ; faldo:end ?pfse73 ; up:ligand ?ligand74 ; rdf:type up:Binding_Site_Annotation . ?pfsb72 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?pfse73 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?ligand74 rdfs:subClassOf chebi:57540 . ?pfs77 up:annotation ?annotation78 . ?annotation78 faldo:begin ?pfsb79 ; faldo:end ?pfse80 ; up:ligand ?ligand81 ; rdf:type up:Binding_Site_Annotation . ?pfsb79 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?pfse80 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?ligand81 rdfs:subClassOf chebi:57540 . ?pfs84 up:annotation ?annotation85 . ?annotation85 faldo:begin ?pfsb86 ; faldo:end ?pfse87 ; up:ligand ?ligand88 ; rdf:type up:Binding_Site_Annotation . ?pfsb86 faldo:position ?thisPositionOn89 ; rdf:type faldo:ExactPosition . ?pfse87 faldo:position ?thisPositionOn90 ; rdf:type faldo:ExactPosition . ?ligand88 rdfs:subClassOf chebi:57540 . _:566333 a rdf:Statement ; up:attribution _:566303 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:566334 a rdf:Statement ; up:attribution _:566304 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:566335 a rdf:Statement ; up:attribution _:566305 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:566336 a rdf:Statement ; up:attribution _:566306 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:566337 a rdf:Statement ; up:attribution _:566307 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:566338 a rdf:Statement ; up:attribution _:566308 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:566339 a rdf:Statement ; up:attribution _:566309 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:566340 a rdf:Statement ; up:attribution _:566310 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:227 . _:566341 a rdf:Statement ; up:attribution _:566311 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:234 . _:566342 a rdf:Statement ; up:attribution _:566312 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:235 . _:566343 a rdf:Statement ; up:attribution _:566313 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:436 . _:566344 a rdf:Statement ; up:attribution _:566314 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:566345 a rdf:Statement ; up:attribution _:566315 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:464 . _:566346 a rdf:Statement ; up:attribution _:566316 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:566347 a rdf:Statement ; up:attribution _:566317 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:520 . _:566348 a rdf:Statement ; up:attribution _:566318 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:566349 a rdf:Statement ; up:attribution _:566319 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003911 . _:566350 a rdf:Statement ; up:attribution _:566320 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006259 . _:566351 a rdf:Statement ; up:source unirule:MF_01588 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:566352 a rdf:Statement ; up:attribution _:566321 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:566353 a rdf:Statement ; up:source unirule:MF_01588 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:566354 a rdf:Statement ; up:attribution _:566322 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:566355 a rdf:Statement ; up:source unirule:MF_01588 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:566356 a rdf:Statement ; up:attribution _:566323 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:566357 a rdf:Statement ; up:source unirule:MF_01588 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:566358 a rdf:Statement ; up:attribution _:566324 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:566359 a rdf:Statement ; up:source unirule:MF_01588 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:566360 a rdf:Statement ; up:attribution _:566325 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:566361 a rdf:Statement ; up:source unirule:MF_01588 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:566362 a rdf:Statement ; up:attribution _:566326 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:566363 a rdf:Statement ; up:source unirule:MF_01588 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:566364 a rdf:Statement ; up:attribution _:566327 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:566365 a rdf:Statement ; up:source unirule:MF_01588 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:566366 a rdf:Statement ; up:attribution _:566328 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:566367 a rdf:Statement ; up:source unirule:MF_01588 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:566368 a rdf:Statement ; up:attribution _:566329 ; rdf:subject ?pfs63 ; rdf:predicate up:annotation ; rdf:object ?annotation64 . _:566369 a rdf:Statement ; up:source unirule:MF_01588 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:566370 a rdf:Statement ; up:attribution _:566330 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:566371 a rdf:Statement ; up:source unirule:MF_01588 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:566372 a rdf:Statement ; up:attribution _:566331 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:566373 a rdf:Statement ; up:source unirule:MF_01588 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:566374 a rdf:Statement ; up:attribution _:566332 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01588 #Rule MF_01588 Created by:rivoire on:2007-11-16 Modified by:ecastro on:2023-06-01 VALUES ?supertaxon91 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01588 . ?thisOrganism rdfs:subClassOf+ ?supertaxon91 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_01577 . })) . BIND(URI(CONCAT(STR(?this), '#MF_01588a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01588a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01588a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01588a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01588a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01588a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionQ837V697 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V699 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ837V6MF_0158892 . ?templateMotifSequenceMatchRegionQ837V697 faldo:begin ?templateMotifSequenceMatchBeginQ837V698 . ?templateMotifSequenceMatchBeginQ837V698 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V693 ; faldo:reference isoform:Q837V6-1 . ?templateMotifSequenceProfileAlignmentOperationQ837V699 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . ?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588103 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ837V6MF_0158894 . ?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588102 . ?targetMotifMatchRegionMatchBeginMF_01588102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0158895 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01588103 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_0158892, 1, (STRLEN(?templateMotifCigarQ837V6MF_0158892) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_0158892, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionQ837V693) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_0158894, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_0158894) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_0158894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_0158894, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_0158894) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_0158894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) . BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0158895) - 1) AS ?thisPositionOn13) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_0158892, 1, (STRLEN(?templateMotifCigarQ837V6MF_0158892) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_0158892, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionQ837V693) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_0158894, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_0158894) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_0158894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_0158894, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_0158894) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_0158894, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) . BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0158895) - 1) AS ?thisPositionOn14) . BIND(?this AS ?pfs1t108) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) . FILTER (REGEX('D[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][YF]D', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) . BIND(URI(CONCAT(STR(?this), '#MF_01588a9')) AS ?annotation9) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionQ837V6114 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6116 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ837V6MF_01588109 . ?templateMotifSequenceMatchRegionQ837V6114 faldo:begin ?templateMotifSequenceMatchBeginQ837V6115 . ?templateMotifSequenceMatchBeginQ837V6115 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6110 ; faldo:reference isoform:Q837V6-1 . ?templateMotifSequenceProfileAlignmentOperationQ837V6116 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . ?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588120 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ837V6MF_01588111 . ?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588119 . ?targetMotifMatchRegionMatchBeginMF_01588119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588112 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01588120 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588109, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588109) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588109, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionQ837V6110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588111, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588111) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588111, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588111) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) . BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_01588112) - 1) AS ?thisPositionOn20) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588109, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588109) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588109, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionQ837V6110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588111, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588111) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588111, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588111) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) . BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_01588112) - 1) AS ?thisPositionOn21) . BIND(?this AS ?pfs1t125) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) . FILTER (REGEX('S[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) . BIND(URI(CONCAT(STR(?this), '#MF_01588a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionQ837V6131 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6133 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ837V6MF_01588126 . ?templateMotifSequenceMatchRegionQ837V6131 faldo:begin ?templateMotifSequenceMatchBeginQ837V6132 . ?templateMotifSequenceMatchBeginQ837V6132 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6127 ; faldo:reference isoform:Q837V6-1 . ?templateMotifSequenceProfileAlignmentOperationQ837V6133 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . ?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588137 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ837V6MF_01588128 . ?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588136 . ?targetMotifMatchRegionMatchBeginMF_01588136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588129 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01588137 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588126, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588126) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588126, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionQ837V6127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588128, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588128) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588128, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588128) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) . BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_01588129) - 1) AS ?thisPositionOn26) . BIND(?thisPositionOn26 AS ?thisPositionOn27) . BIND(?this AS ?pfs1t140) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01588a23')) AS ?annotation23) . BIND(?this AS ?pfs22) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionQ837V6146 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6148 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ837V6MF_01588141 . ?templateMotifSequenceMatchRegionQ837V6146 faldo:begin ?templateMotifSequenceMatchBeginQ837V6147 . ?templateMotifSequenceMatchBeginQ837V6147 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6142 ; faldo:reference isoform:Q837V6-1 . ?templateMotifSequenceProfileAlignmentOperationQ837V6148 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . ?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588152 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ837V6MF_01588143 . ?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588151 . ?targetMotifMatchRegionMatchBeginMF_01588151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588144 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01588152 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588141, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588141) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588141, CONCAT('^(?:-*[^-]){', STR(((409 - ?templateMotifSequenceMatchBeginPositionQ837V6142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588143, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588143) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588143, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588143) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) . BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_01588144) - 1) AS ?thisPositionOn33) . BIND(?thisPositionOn33 AS ?thisPositionOn34) . BIND(?this AS ?pfs1t155) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01588a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionQ837V6161 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6163 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ837V6MF_01588156 . ?templateMotifSequenceMatchRegionQ837V6161 faldo:begin ?templateMotifSequenceMatchBeginQ837V6162 . ?templateMotifSequenceMatchBeginQ837V6162 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6157 ; faldo:reference isoform:Q837V6-1 . ?templateMotifSequenceProfileAlignmentOperationQ837V6163 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . ?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588167 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ837V6MF_01588158 . ?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588166 . ?targetMotifMatchRegionMatchBeginMF_01588166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588159 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01588167 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588156, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588156) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588156, CONCAT('^(?:-*[^-]){', STR(((412 - ?templateMotifSequenceMatchBeginPositionQ837V6157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588158, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588158) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588158, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588158) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) . BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_01588159) - 1) AS ?thisPositionOn40) . BIND(?thisPositionOn40 AS ?thisPositionOn41) . BIND(?this AS ?pfs1t170) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01588a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionQ837V6176 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6178 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ837V6MF_01588171 . ?templateMotifSequenceMatchRegionQ837V6176 faldo:begin ?templateMotifSequenceMatchBeginQ837V6177 . ?templateMotifSequenceMatchBeginQ837V6177 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6172 ; faldo:reference isoform:Q837V6-1 . ?templateMotifSequenceProfileAlignmentOperationQ837V6178 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . ?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588182 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ837V6MF_01588173 . ?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588181 . ?targetMotifMatchRegionMatchBeginMF_01588181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588174 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01588182 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588171, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588171) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588171, CONCAT('^(?:-*[^-]){', STR(((427 - ?templateMotifSequenceMatchBeginPositionQ837V6172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588173, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588173) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588173, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588173) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) . BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_01588174) - 1) AS ?thisPositionOn47) . BIND(?thisPositionOn47 AS ?thisPositionOn48) . BIND(?this AS ?pfs1t185) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01588a43')) AS ?annotation43) . BIND(?this AS ?pfs42) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch190 faldo:location ?templateMotifSequenceMatchRegionQ837V6191 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6193 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ837V6MF_01588186 . ?templateMotifSequenceMatchRegionQ837V6191 faldo:begin ?templateMotifSequenceMatchBeginQ837V6192 . ?templateMotifSequenceMatchBeginQ837V6192 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6187 ; faldo:reference isoform:Q837V6-1 . ?templateMotifSequenceProfileAlignmentOperationQ837V6193 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . ?targetMotifMatch194 faldo:location ?targetMotifMatchRegionMatch195 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588197 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ837V6MF_01588188 . ?targetMotifMatchRegionMatch195 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588196 . ?targetMotifMatchRegionMatchBeginMF_01588196 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588189 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01588197 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588186, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588186) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588186, CONCAT('^(?:-*[^-]){', STR(((432 - ?templateMotifSequenceMatchBeginPositionQ837V6187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588188, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588188) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588188, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588188) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) . BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_01588189) - 1) AS ?thisPositionOn54) . BIND(?thisPositionOn54 AS ?thisPositionOn55) . BIND(?this AS ?pfs1t200) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01588a50')) AS ?annotation50) . BIND(?this AS ?pfs49) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch205 faldo:location ?templateMotifSequenceMatchRegionQ837V6206 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6208 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ837V6MF_01588201 . ?templateMotifSequenceMatchRegionQ837V6206 faldo:begin ?templateMotifSequenceMatchBeginQ837V6207 . ?templateMotifSequenceMatchBeginQ837V6207 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6202 ; faldo:reference isoform:Q837V6-1 . ?templateMotifSequenceProfileAlignmentOperationQ837V6208 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . ?targetMotifMatch209 faldo:location ?targetMotifMatchRegionMatch210 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588212 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ837V6MF_01588203 . ?targetMotifMatchRegionMatch210 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588211 . ?targetMotifMatchRegionMatchBeginMF_01588211 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588204 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01588212 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588201, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588201) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588201, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionQ837V6202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1213) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588203, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588203) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588203, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588203) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), '')))), '[^-]', ''))) AS ?step2214) . BIND(((?step2214 + ?targetMotifMatchRegionMatchBeginPositionMF_01588204) - 1) AS ?thisPositionOn61) . BIND(?thisPositionOn61 AS ?thisPositionOn62) . BIND(?this AS ?pfs1t215) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) . FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01588a57')) AS ?annotation57) . BIND(?this AS ?pfs56) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch220 faldo:location ?templateMotifSequenceMatchRegionQ837V6221 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6223 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ837V6MF_01588216 . ?templateMotifSequenceMatchRegionQ837V6221 faldo:begin ?templateMotifSequenceMatchBeginQ837V6222 . ?templateMotifSequenceMatchBeginQ837V6222 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6217 ; faldo:reference isoform:Q837V6-1 . ?templateMotifSequenceProfileAlignmentOperationQ837V6223 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . ?targetMotifMatch224 faldo:location ?targetMotifMatchRegionMatch225 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588227 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ837V6MF_01588218 . ?targetMotifMatchRegionMatch225 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588226 . ?targetMotifMatchRegionMatchBeginMF_01588226 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588219 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01588227 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588216, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588216) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588216, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionQ837V6217) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1228) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588218, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588218) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588218, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588218) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), '')))), '[^-]', ''))) AS ?step2229) . BIND(((?step2229 + ?targetMotifMatchRegionMatchBeginPositionMF_01588219) - 1) AS ?thisPositionOn68) . BIND(?thisPositionOn68 AS ?thisPositionOn69) . BIND(?this AS ?pfs1t230) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01588a64')) AS ?annotation64) . BIND(?this AS ?pfs63) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch235 faldo:location ?templateMotifSequenceMatchRegionQ837V6236 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6238 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ837V6MF_01588231 . ?templateMotifSequenceMatchRegionQ837V6236 faldo:begin ?templateMotifSequenceMatchBeginQ837V6237 . ?templateMotifSequenceMatchBeginQ837V6237 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6232 ; faldo:reference isoform:Q837V6-1 . ?templateMotifSequenceProfileAlignmentOperationQ837V6238 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . ?targetMotifMatch239 faldo:location ?targetMotifMatchRegionMatch240 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588242 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ837V6MF_01588233 . ?targetMotifMatchRegionMatch240 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588241 . ?targetMotifMatchRegionMatchBeginMF_01588241 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588234 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01588242 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588231, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588231) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588231, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionQ837V6232) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1243) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588233, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588233) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588233, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588233) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), '')))), '[^-]', ''))) AS ?step2244) . BIND(((?step2244 + ?targetMotifMatchRegionMatchBeginPositionMF_01588234) - 1) AS ?thisPositionOn75) . BIND(?thisPositionOn75 AS ?thisPositionOn76) . BIND(?this AS ?pfs1t245) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01588a71')) AS ?annotation71) . BIND(?this AS ?pfs70) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch250 faldo:location ?templateMotifSequenceMatchRegionQ837V6251 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6253 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ837V6MF_01588246 . ?templateMotifSequenceMatchRegionQ837V6251 faldo:begin ?templateMotifSequenceMatchBeginQ837V6252 . ?templateMotifSequenceMatchBeginQ837V6252 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6247 ; faldo:reference isoform:Q837V6-1 . ?templateMotifSequenceProfileAlignmentOperationQ837V6253 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . ?targetMotifMatch254 faldo:location ?targetMotifMatchRegionMatch255 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588257 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ837V6MF_01588248 . ?targetMotifMatchRegionMatch255 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588256 . ?targetMotifMatchRegionMatchBeginMF_01588256 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588249 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01588257 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588246, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588246) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588246, CONCAT('^(?:-*[^-]){', STR(((291 - ?templateMotifSequenceMatchBeginPositionQ837V6247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1258) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588248, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588248) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588248, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588248) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), '')))), '[^-]', ''))) AS ?step2259) . BIND(((?step2259 + ?targetMotifMatchRegionMatchBeginPositionMF_01588249) - 1) AS ?thisPositionOn82) . BIND(?thisPositionOn82 AS ?thisPositionOn83) . BIND(?this AS ?pfs1t260) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01588a78')) AS ?annotation78) . BIND(?this AS ?pfs77) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch265 faldo:location ?templateMotifSequenceMatchRegionQ837V6266 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837V6268 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ837V6MF_01588261 . ?templateMotifSequenceMatchRegionQ837V6266 faldo:begin ?templateMotifSequenceMatchBeginQ837V6267 . ?templateMotifSequenceMatchBeginQ837V6267 faldo:position ?templateMotifSequenceMatchBeginPositionQ837V6262 ; faldo:reference isoform:Q837V6-1 . ?templateMotifSequenceProfileAlignmentOperationQ837V6268 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . ?targetMotifMatch269 faldo:location ?targetMotifMatchRegionMatch270 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01588272 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ837V6MF_01588263 . ?targetMotifMatchRegionMatch270 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01588271 . ?targetMotifMatchRegionMatchBeginMF_01588271 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01588264 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01588272 edam:has_input signature:MF_01588 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837V6MF_01588261, 1, (STRLEN(?templateMotifCigarQ837V6MF_01588261) - STRLEN(REPLACE(?templateMotifCigarQ837V6MF_01588261, CONCAT('^(?:-*[^-]){', STR(((315 - ?templateMotifSequenceMatchBeginPositionQ837V6262) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1273) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588263, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588263) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837V6MF_01588263, 1, (STRLEN(?targetMotifMatchCigarQ837V6MF_01588263) - STRLEN(REPLACE(?targetMotifMatchCigarQ837V6MF_01588263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), '')))), '[^-]', ''))) AS ?step2274) . BIND(((?step2274 + ?targetMotifMatchRegionMatchBeginPositionMF_01588264) - 1) AS ?thisPositionOn89) . BIND(?thisPositionOn89 AS ?thisPositionOn90) . BIND(?this AS ?pfs1t275) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01588a85')) AS ?annotation85) . BIND(?this AS ?pfs84) . } }