CONSTRUCT { _:613017 up:source unirule:MF_01679 . _:613018 up:source unirule:MF_01679 . _:613019 up:source unirule:MF_01679 . _:613020 up:source unirule:MF_01679 . _:613021 up:source unirule:MF_01679 . _:613022 up:source unirule:MF_01679 . _:613023 up:source unirule:MF_01679 . _:613024 up:source unirule:MF_01679 . _:613025 up:source unirule:MF_01679 . _:613026 up:source unirule:MF_01679 . _:613027 up:source unirule:MF_01679 . _:613028 up:source unirule:MF_01679 . _:613029 up:source unirule:MF_01679 . _:613030 up:source unirule:MF_01679 . _:613031 up:source unirule:MF_01679 . _:613032 up:source unirule:MF_01679 . _:613033 up:source unirule:MF_01679 . _:613034 up:source unirule:MF_01679 . _:613035 up:source unirule:MF_01679 . _:613036 up:source unirule:MF_01679 . _:613037 up:source unirule:MF_01679 . _:613038 up:source unirule:MF_01679 . _:613039 up:source unirule:MF_01679 . _:613040 up:source unirule:MF_01679 . _:613041 up:source unirule:MF_01679 . _:613042 up:source unirule:MF_01679 . _:613043 up:source unirule:MF_01679 . _:613044 up:source unirule:MF_01679 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 , ?annotation8 , ?annotation9 , ?annotation10 ; up:classifiedWith GO:0000287 , GO:0019509 , GO:0043715 , keyword:28 , keyword:413 , keyword:460 , keyword:479 , keyword:486 ; up:recommendedName ?name0 . ?name0 up:ecName '5.3.2.5' ; up:fullName '2,3-diketo-5-methylthiopentyl-1-phosphate enolase' ; up:shortName 'DK-MTP-1-P enolase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'RuBisCO-like protein' ; up:shortName 'RLP' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'mtnW' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P).' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/18769>; up:enzymeClass <http://purl.uniprot.org/enzyme/5.3.2.5>. ?annotation6 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 Mg(2+) ion per subunit.' . ?annotation7 a up:Pathway_Annotation ; rdfs:comment 'Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 3/6.' . ?annotation8 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation9 a up:Annotation ; rdfs:comment 'Has no RuBP-carboxylation activity.' . ?annotation10 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the RuBisCO large chain family. Type IV subfamily.' . ?pfs11 up:annotation ?annotation12 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; up:ligand ?ligand15 ; rdf:type up:Binding_Site_Annotation . ?pfsb13 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?ligand15 rdfs:subClassOf ?molecule16 . ?molecule16 rdfs:label 'substrate' . ?pfs19 up:annotation ?annotation20 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; up:ligand ?ligand23 ; rdf:type up:Binding_Site_Annotation . ?pfsb21 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand23 rdfs:subClassOf ?molecule24 . ?molecule24 rdfs:label 'substrate' . ?pfs27 up:annotation ?annotation28 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor' . ?pfsb29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfs33 up:annotation ?annotation34 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; up:ligand ?ligand37 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'via carbamate group' . ?pfsb35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?ligand37 rdfs:subClassOf chebi:18420 . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation . ?pfsb42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf chebi:18420 . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation . ?pfsb49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf chebi:18420 . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf ?molecule59 . ?molecule59 rdfs:label 'substrate' . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; up:ligand ?ligand66 ; rdf:type up:Binding_Site_Annotation . ?pfsb64 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?ligand66 rdfs:subClassOf ?molecule67 . ?molecule67 rdfs:label 'substrate' . ?pfs70 up:annotation ?annotation71 . ?annotation71 faldo:begin ?pfsb72 ; faldo:end ?pfse73 ; up:ligand ?ligand74 ; rdf:type up:Binding_Site_Annotation . ?pfsb72 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?pfse73 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?ligand74 rdfs:subClassOf ?molecule75 . ?molecule75 rdfs:label 'substrate' . ?pfs78 up:annotation ?annotation79 . ?annotation79 faldo:begin ?pfsb80 ; faldo:end ?pfse81 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-carboxylysine' . ?pfsb80 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?pfse81 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . _:613045 a rdf:Statement ; up:attribution _:613017 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:613046 a rdf:Statement ; up:attribution _:613018 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:613047 a rdf:Statement ; up:attribution _:613019 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:613048 a rdf:Statement ; up:attribution _:613020 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:613049 a rdf:Statement ; up:attribution _:613021 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:613050 a rdf:Statement ; up:attribution _:613022 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:613051 a rdf:Statement ; up:attribution _:613023 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:613052 a rdf:Statement ; up:attribution _:613024 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:613053 a rdf:Statement ; up:attribution _:613025 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:613054 a rdf:Statement ; up:attribution _:613026 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:613055 a rdf:Statement ; up:attribution _:613027 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:28 . _:613056 a rdf:Statement ; up:attribution _:613028 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:413 . _:613057 a rdf:Statement ; up:attribution _:613029 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:613058 a rdf:Statement ; up:attribution _:613030 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:613059 a rdf:Statement ; up:attribution _:613031 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:486 . _:613060 a rdf:Statement ; up:attribution _:613032 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:613061 a rdf:Statement ; up:attribution _:613033 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0043715 . _:613062 a rdf:Statement ; up:attribution _:613034 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019509 . _:613063 a rdf:Statement ; up:source unirule:MF_01679 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:613064 a rdf:Statement ; up:attribution _:613035 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:613065 a rdf:Statement ; up:source unirule:MF_01679 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:613066 a rdf:Statement ; up:attribution _:613036 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:613067 a rdf:Statement ; up:source unirule:MF_01679 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:613068 a rdf:Statement ; up:attribution _:613037 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:613069 a rdf:Statement ; up:source unirule:MF_01679 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:613070 a rdf:Statement ; up:attribution _:613038 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:613071 a rdf:Statement ; up:source unirule:MF_01679 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:613072 a rdf:Statement ; up:attribution _:613039 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:613073 a rdf:Statement ; up:source unirule:MF_01679 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:613074 a rdf:Statement ; up:attribution _:613040 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:613075 a rdf:Statement ; up:source unirule:MF_01679 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:613076 a rdf:Statement ; up:attribution _:613041 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:613077 a rdf:Statement ; up:source unirule:MF_01679 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:613078 a rdf:Statement ; up:attribution _:613042 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:613079 a rdf:Statement ; up:source unirule:MF_01679 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:613080 a rdf:Statement ; up:attribution _:613043 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:613081 a rdf:Statement ; up:source unirule:MF_01679 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:613082 a rdf:Statement ; up:attribution _:613044 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01679 #Rule MF_01679 Created by:? on:2008-10-22 Modified by:Catherine Rivoire on:2024-04-30 VALUES ?supertaxon84 {taxon:3252632 taxon:1239} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01679 . ?thisOrganism rdfs:subClassOf+ ?supertaxon84 . BIND(URI(CONCAT(STR(?this), '#MF_01679a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01679a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01679a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01679a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01679a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01679a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01679a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_01679a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_01679a10')) AS ?annotation10) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionQ5L1E290 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E292 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5L1E2MF_0167985 . ?templateMotifSequenceMatchRegionQ5L1E290 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E291 . ?templateMotifSequenceMatchBeginQ5L1E291 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E286 ; faldo:reference isoform:Q5L1E2-1 . ?templateMotifSequenceProfileAlignmentOperationQ5L1E292 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . ?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0167996 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5L1E2MF_0167987 . ?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0167995 . ?targetMotifMatchRegionMatchBeginMF_0167995 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0167988 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0167996 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_0167985, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_0167985) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_0167985, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionQ5L1E286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_0167987, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_0167987) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_0167987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_0167987, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_0167987) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_0167987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) . BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0167988) - 1) AS ?thisPositionOn17) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_0167985, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_0167985) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_0167985, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionQ5L1E286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_0167987, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_0167987) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_0167987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_0167987, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_0167987) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_0167987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) . BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0167988) - 1) AS ?thisPositionOn18) . BIND(?this AS ?pfs1t101) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse14) . FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) . BIND(URI(CONCAT(STR(?this), '#MF_01679a12')) AS ?annotation12) . BIND(?this AS ?pfs11) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2107 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2109 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5L1E2MF_01679102 . ?templateMotifSequenceMatchRegionQ5L1E2107 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2108 . ?templateMotifSequenceMatchBeginQ5L1E2108 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2103 ; faldo:reference isoform:Q5L1E2-1 . ?templateMotifSequenceProfileAlignmentOperationQ5L1E2109 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . ?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679113 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679104 . ?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679112 . ?targetMotifMatchRegionMatchBeginMF_01679112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679105 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01679113 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679102, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679102) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679102, CONCAT('^(?:-*[^-]){', STR(((359 - ?templateMotifSequenceMatchBeginPositionQ5L1E2103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679104, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679104) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679104, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679104) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) . BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01679105) - 1) AS ?thisPositionOn25) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679102, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679102) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679102, CONCAT('^(?:-*[^-]){', STR(((360 - ?templateMotifSequenceMatchBeginPositionQ5L1E2103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679104, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679104) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679104, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679104) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) . BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_01679105) - 1) AS ?thisPositionOn26) . BIND(?this AS ?pfs1t118) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse22) . FILTER ((BOUND(?thisPositionOn25) && BOUND(?thisPositionOn26))) . BIND(URI(CONCAT(STR(?this), '#MF_01679a20')) AS ?annotation20) . BIND(?this AS ?pfs19) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2124 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2126 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5L1E2MF_01679119 . ?templateMotifSequenceMatchRegionQ5L1E2124 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2125 . ?templateMotifSequenceMatchBeginQ5L1E2125 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2120 ; faldo:reference isoform:Q5L1E2-1 . ?templateMotifSequenceProfileAlignmentOperationQ5L1E2126 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . ?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679130 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679121 . ?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679129 . ?targetMotifMatchRegionMatchBeginMF_01679129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679122 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01679130 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679119, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679119) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679119, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionQ5L1E2120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679121, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679121) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679121, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679121) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) . BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_01679122) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs1t133) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01679a28')) AS ?annotation28) . BIND(?this AS ?pfs27) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2139 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2141 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5L1E2MF_01679134 . ?templateMotifSequenceMatchRegionQ5L1E2139 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2140 . ?templateMotifSequenceMatchBeginQ5L1E2140 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2135 ; faldo:reference isoform:Q5L1E2-1 . ?templateMotifSequenceProfileAlignmentOperationQ5L1E2141 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . ?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679145 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679136 . ?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679144 . ?targetMotifMatchRegionMatchBeginMF_01679144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679137 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01679145 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679134, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679134) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679134, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionQ5L1E2135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679136, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679136) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679136, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679136) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) . BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01679137) - 1) AS ?thisPositionOn38) . BIND(?thisPositionOn38 AS ?thisPositionOn39) . BIND(?this AS ?pfs1t148) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01679a34')) AS ?annotation34) . BIND(?this AS ?pfs33) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2154 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2156 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5L1E2MF_01679149 . ?templateMotifSequenceMatchRegionQ5L1E2154 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2155 . ?templateMotifSequenceMatchBeginQ5L1E2155 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2150 ; faldo:reference isoform:Q5L1E2-1 . ?templateMotifSequenceProfileAlignmentOperationQ5L1E2156 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . ?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679160 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679151 . ?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679159 . ?targetMotifMatchRegionMatchBeginMF_01679159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679152 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01679160 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679149, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679149) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679149, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionQ5L1E2150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679151, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679151) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679151, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679151) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) . BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_01679152) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs1t163) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01679a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2169 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2171 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5L1E2MF_01679164 . ?templateMotifSequenceMatchRegionQ5L1E2169 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2170 . ?templateMotifSequenceMatchBeginQ5L1E2170 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2165 ; faldo:reference isoform:Q5L1E2-1 . ?templateMotifSequenceProfileAlignmentOperationQ5L1E2171 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . ?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679175 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679166 . ?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679174 . ?targetMotifMatchRegionMatchBeginMF_01679174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679167 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01679175 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679164, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679164) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679164, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionQ5L1E2165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679166, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679166) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679166, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679166) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) . BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_01679167) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs1t178) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01679a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch183 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2184 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2186 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5L1E2MF_01679179 . ?templateMotifSequenceMatchRegionQ5L1E2184 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2185 . ?templateMotifSequenceMatchBeginQ5L1E2185 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2180 ; faldo:reference isoform:Q5L1E2-1 . ?templateMotifSequenceProfileAlignmentOperationQ5L1E2186 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . ?targetMotifMatch187 faldo:location ?targetMotifMatchRegionMatch188 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679190 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679181 . ?targetMotifMatchRegionMatch188 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679189 . ?targetMotifMatchRegionMatchBeginMF_01679189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679182 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01679190 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679179, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679179) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679179, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionQ5L1E2180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1191) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679181, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679181) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679181, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679181) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), '')))), '[^-]', ''))) AS ?step2192) . BIND(((?step2192 + ?targetMotifMatchRegionMatchBeginPositionMF_01679182) - 1) AS ?thisPositionOn60) . BIND(?thisPositionOn60 AS ?thisPositionOn61) . BIND(?this AS ?pfs1t193) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01679a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch198 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2199 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2201 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5L1E2MF_01679194 . ?templateMotifSequenceMatchRegionQ5L1E2199 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2200 . ?templateMotifSequenceMatchBeginQ5L1E2200 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2195 ; faldo:reference isoform:Q5L1E2-1 . ?templateMotifSequenceProfileAlignmentOperationQ5L1E2201 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . ?targetMotifMatch202 faldo:location ?targetMotifMatchRegionMatch203 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679205 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679196 . ?targetMotifMatchRegionMatch203 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679204 . ?targetMotifMatchRegionMatchBeginMF_01679204 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679197 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01679205 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679194, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679194) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679194, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionQ5L1E2195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1206) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679196, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679196) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679196, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679196) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), '')))), '[^-]', ''))) AS ?step2207) . BIND(((?step2207 + ?targetMotifMatchRegionMatchBeginPositionMF_01679197) - 1) AS ?thisPositionOn68) . BIND(?thisPositionOn68 AS ?thisPositionOn69) . BIND(?this AS ?pfs1t208) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse65) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01679a63')) AS ?annotation63) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch213 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2214 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2216 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5L1E2MF_01679209 . ?templateMotifSequenceMatchRegionQ5L1E2214 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2215 . ?templateMotifSequenceMatchBeginQ5L1E2215 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2210 ; faldo:reference isoform:Q5L1E2-1 . ?templateMotifSequenceProfileAlignmentOperationQ5L1E2216 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . ?targetMotifMatch217 faldo:location ?targetMotifMatchRegionMatch218 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679220 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679211 . ?targetMotifMatchRegionMatch218 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679219 . ?targetMotifMatchRegionMatchBeginMF_01679219 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679212 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01679220 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679209, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679209) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679209, CONCAT('^(?:-*[^-]){', STR(((337 - ?templateMotifSequenceMatchBeginPositionQ5L1E2210) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1221) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679211, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679211) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679211, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679211) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), '')))), '[^-]', ''))) AS ?step2222) . BIND(((?step2222 + ?targetMotifMatchRegionMatchBeginPositionMF_01679212) - 1) AS ?thisPositionOn76) . BIND(?thisPositionOn76 AS ?thisPositionOn77) . BIND(?this AS ?pfs1t223) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb72) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse73) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_01679a71')) AS ?annotation71) . BIND(?this AS ?pfs70) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch228 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2229 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2231 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5L1E2MF_01679224 . ?templateMotifSequenceMatchRegionQ5L1E2229 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2230 . ?templateMotifSequenceMatchBeginQ5L1E2230 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2225 ; faldo:reference isoform:Q5L1E2-1 . ?templateMotifSequenceProfileAlignmentOperationQ5L1E2231 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . ?targetMotifMatch232 faldo:location ?targetMotifMatchRegionMatch233 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679235 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679226 . ?targetMotifMatchRegionMatch233 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679234 . ?targetMotifMatchRegionMatchBeginMF_01679234 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679227 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01679235 edam:has_input signature:MF_01679 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679224, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679224) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679224, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionQ5L1E2225) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679226, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679226) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679226, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679226) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) . BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_01679227) - 1) AS ?thisPositionOn82) . BIND(?thisPositionOn82 AS ?thisPositionOn83) . BIND(?this AS ?pfs1t238) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb80) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse81) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01679a79')) AS ?annotation79) . BIND(?this AS ?pfs78) . } }