CONSTRUCT { _:732619 up:source unirule:MF_02090 . _:732620 up:source unirule:MF_02090 . _:732621 up:source unirule:MF_02090 . _:732622 up:source unirule:MF_02090 . _:732623 up:source unirule:MF_02090 . _:732624 up:source unirule:MF_02090 . _:732625 up:source unirule:MF_02090 . _:732626 up:source unirule:MF_02090 . _:732627 up:source unirule:MF_02090 . _:732628 up:source unirule:MF_02090 . _:732629 up:source unirule:MF_02090 . _:732630 up:source unirule:MF_02090 . _:732631 up:source unirule:MF_02090 . _:732632 up:source unirule:MF_02090 . _:732633 up:source unirule:MF_02090 . _:732634 up:source unirule:MF_02090 . _:732635 up:source unirule:MF_02090 . _:732636 up:source unirule:MF_02090 . _:732637 up:source unirule:MF_02090 . _:732638 up:source unirule:MF_02090 . _:732639 up:source unirule:MF_02090 . _:732640 up:source unirule:MF_02090 . _:732641 up:source unirule:MF_02090 . _:732642 up:source unirule:MF_02090 . _:732643 up:source unirule:MF_02090 . _:732644 up:source unirule:MF_02090 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 ; up:classifiedWith GO:0005524 , GO:0008795 , GO:0009435 , keyword:436 , keyword:520 , keyword:547 , keyword:67 ; up:recommendedName ?name0 . ?name0 up:ecName '6.3.5.1' ; up:fullName 'Glutamine-dependent NAD(+) synthetase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'NAD(+) synthase [glutamine-hydrolyzing]' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'nadE' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/24384>; up:enzymeClass <http://purl.uniprot.org/enzyme/6.3.5.1>. ?annotation6 a up:Pathway_Annotation ; rdfs:comment 'Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from deamido-NAD(+) (L-Gln route): step 1/1.' . ?annotation7 a up:Similarity_Annotation ; rdfs:comment 'In the C-terminal section; belongs to the NAD synthetase family.' . ?pfs8 up:annotation ?annotation9 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; up:ligand ?ligand12 ; rdf:type up:Binding_Site_Annotation . ?pfsb10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?ligand12 rdfs:subClassOf chebi:30616 . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; up:ligand ?ligand19 ; rdf:type up:Binding_Site_Annotation . ?pfsb17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?ligand19 rdfs:subClassOf chebi:58437 . ?pfs22 up:annotation ?annotation23 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor; for glutaminase activity' . ?pfsb24 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'For glutaminase activity' . ?pfsb30 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfs34 up:annotation ?annotation35 . ?annotation35 faldo:begin ?pfsb36 ; faldo:end ?pfse37 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Nucleophile; for glutaminase activity' . ?pfsb36 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse37 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation . ?pfsb42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf chebi:58359 . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation . ?pfsb49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf chebi:58359 . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf chebi:58359 . ?pfs61 up:annotation ?annotation62 . ?annotation62 faldo:begin ?pfsb63 ; faldo:end ?pfse64 ; up:ligand ?ligand65 ; rdf:type up:Binding_Site_Annotation . ?pfsb63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?ligand65 rdfs:subClassOf chebi:58437 . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; up:ligand ?ligand72 ; rdf:type up:Binding_Site_Annotation . ?pfsb70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?ligand72 rdfs:subClassOf chebi:30616 . ?pfs75 up:annotation ?annotation76 . ?annotation76 faldo:begin ?pfsb77 ; faldo:end ?pfse78 ; up:ligand ?ligand79 ; rdf:type up:Binding_Site_Annotation . ?pfsb77 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?pfse78 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . ?ligand79 rdfs:subClassOf chebi:58437 . ?pfs82 up:annotation ?annotation83 . ?annotation83 faldo:begin ?pfsb84 ; faldo:end ?pfse85 ; up:ligand ?ligand86 ; rdf:type up:Binding_Site_Annotation . ?pfsb84 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?pfse85 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . ?ligand86 rdfs:subClassOf chebi:58437 . _:732645 a rdf:Statement ; up:attribution _:732619 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:732646 a rdf:Statement ; up:attribution _:732620 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:732647 a rdf:Statement ; up:attribution _:732621 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:732648 a rdf:Statement ; up:attribution _:732622 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:732649 a rdf:Statement ; up:attribution _:732623 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:732650 a rdf:Statement ; up:attribution _:732624 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:732651 a rdf:Statement ; up:attribution _:732625 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:732652 a rdf:Statement ; up:attribution _:732626 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:732653 a rdf:Statement ; up:attribution _:732627 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:436 . _:732654 a rdf:Statement ; up:attribution _:732628 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:520 . _:732655 a rdf:Statement ; up:attribution _:732629 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:732656 a rdf:Statement ; up:attribution _:732630 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:732657 a rdf:Statement ; up:attribution _:732631 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008795 . _:732658 a rdf:Statement ; up:attribution _:732632 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009435 . _:732659 a rdf:Statement ; up:source unirule:MF_02090 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:732660 a rdf:Statement ; up:attribution _:732633 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:732661 a rdf:Statement ; up:source unirule:MF_02090 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:732662 a rdf:Statement ; up:attribution _:732634 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:732663 a rdf:Statement ; up:source unirule:MF_02090 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:732664 a rdf:Statement ; up:attribution _:732635 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:732665 a rdf:Statement ; up:source unirule:MF_02090 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:732666 a rdf:Statement ; up:attribution _:732636 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:732667 a rdf:Statement ; up:source unirule:MF_02090 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:732668 a rdf:Statement ; up:attribution _:732637 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:732669 a rdf:Statement ; up:source unirule:MF_02090 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:732670 a rdf:Statement ; up:attribution _:732638 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:732671 a rdf:Statement ; up:source unirule:MF_02090 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:732672 a rdf:Statement ; up:attribution _:732639 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:732673 a rdf:Statement ; up:source unirule:MF_02090 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:732674 a rdf:Statement ; up:attribution _:732640 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:732675 a rdf:Statement ; up:source unirule:MF_02090 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:732676 a rdf:Statement ; up:attribution _:732641 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:732677 a rdf:Statement ; up:source unirule:MF_02090 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:732678 a rdf:Statement ; up:attribution _:732642 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:732679 a rdf:Statement ; up:source unirule:MF_02090 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:732680 a rdf:Statement ; up:attribution _:732643 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:732681 a rdf:Statement ; up:source unirule:MF_02090 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:732682 a rdf:Statement ; up:attribution _:732644 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02090 #Rule MF_02090 Created by:crivoire on:2017-03-29 Modified by:ecastro on:2023-06-01 VALUES ?supertaxon89 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02090 . ?thisOrganism rdfs:subClassOf+ ?supertaxon89 . BIND(URI(CONCAT(STR(?this), '#MF_02090a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_02090a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_02090a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_02090a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_02090a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_02090a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionP9WJJ395 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJJ397 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WJJ3MF_0209090 . ?templateMotifSequenceMatchRegionP9WJJ395 faldo:begin ?templateMotifSequenceMatchBeginP9WJJ396 . ?templateMotifSequenceMatchBeginP9WJJ396 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJJ391 ; faldo:reference isoform:P9WJJ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WJJ397 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . ?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02090101 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WJJ3MF_0209092 . ?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02090100 . ?targetMotifMatchRegionMatchBeginMF_02090100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0209093 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02090101 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJJ3MF_0209090, 1, (STRLEN(?templateMotifCigarP9WJJ3MF_0209090) - STRLEN(REPLACE(?templateMotifCigarP9WJJ3MF_0209090, CONCAT('^(?:-*[^-]){', STR(((366 - ?templateMotifSequenceMatchBeginPositionP9WJJ391) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_0209092, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_0209092) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_0209092, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_0209092, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_0209092) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_0209092, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) . BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0209093) - 1) AS ?thisPositionOn13) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJJ3MF_0209090, 1, (STRLEN(?templateMotifCigarP9WJJ3MF_0209090) - STRLEN(REPLACE(?templateMotifCigarP9WJJ3MF_0209090, CONCAT('^(?:-*[^-]){', STR(((373 - ?templateMotifSequenceMatchBeginPositionP9WJJ391) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_0209092, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_0209092) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_0209092, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_0209092, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_0209092) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_0209092, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) . BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0209093) - 1) AS ?thisPositionOn14) . BIND(?this AS ?pfs1t106) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) . FILTER (REGEX('[GAP][ARNDCQEGHILKMFPSTWYVBZJUOX]SGG[ARNDCQEGHILKMFPSTWYVBZJUOX]DS', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) . BIND(URI(CONCAT(STR(?this), '#MF_02090a9')) AS ?annotation9) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionP9WJJ3112 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJJ3114 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WJJ3MF_02090107 . ?templateMotifSequenceMatchRegionP9WJJ3112 faldo:begin ?templateMotifSequenceMatchBeginP9WJJ3113 . ?templateMotifSequenceMatchBeginP9WJJ3113 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJJ3108 ; faldo:reference isoform:P9WJJ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WJJ3114 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . ?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02090118 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WJJ3MF_02090109 . ?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02090117 . ?targetMotifMatchRegionMatchBeginMF_02090117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02090110 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02090118 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJJ3MF_02090107, 1, (STRLEN(?templateMotifCigarP9WJJ3MF_02090107) - STRLEN(REPLACE(?templateMotifCigarP9WJJ3MF_02090107, CONCAT('^(?:-*[^-]){', STR(((490 - ?templateMotifSequenceMatchBeginPositionP9WJJ3108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090109, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090109) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090109, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090109) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) . BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_02090110) - 1) AS ?thisPositionOn20) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJJ3MF_02090107, 1, (STRLEN(?templateMotifCigarP9WJJ3MF_02090107) - STRLEN(REPLACE(?templateMotifCigarP9WJJ3MF_02090107, CONCAT('^(?:-*[^-]){', STR(((493 - ?templateMotifSequenceMatchBeginPositionP9WJJ3108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090109, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090109) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090109, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090109) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) . BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_02090110) - 1) AS ?thisPositionOn21) . BIND(?this AS ?pfs1t123) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) . FILTER (REGEX('W[ARNDCQEGHILKMFPSTWYVBZJUOX]T[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) . BIND(URI(CONCAT(STR(?this), '#MF_02090a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionP9WJJ3129 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJJ3131 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WJJ3MF_02090124 . ?templateMotifSequenceMatchRegionP9WJJ3129 faldo:begin ?templateMotifSequenceMatchBeginP9WJJ3130 . ?templateMotifSequenceMatchBeginP9WJJ3130 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJJ3125 ; faldo:reference isoform:P9WJJ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WJJ3131 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . ?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02090135 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WJJ3MF_02090126 . ?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02090134 . ?targetMotifMatchRegionMatchBeginMF_02090134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02090127 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02090135 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJJ3MF_02090124, 1, (STRLEN(?templateMotifCigarP9WJJ3MF_02090124) - STRLEN(REPLACE(?templateMotifCigarP9WJJ3MF_02090124, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionP9WJJ3125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090126, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090126) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090126, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090126) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) . BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_02090127) - 1) AS ?thisPositionOn26) . BIND(?thisPositionOn26 AS ?thisPositionOn27) . BIND(?this AS ?pfs1t138) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_02090a23')) AS ?annotation23) . BIND(?this AS ?pfs22) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionP9WJJ3144 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJJ3146 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WJJ3MF_02090139 . ?templateMotifSequenceMatchRegionP9WJJ3144 faldo:begin ?templateMotifSequenceMatchBeginP9WJJ3145 . ?templateMotifSequenceMatchBeginP9WJJ3145 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJJ3140 ; faldo:reference isoform:P9WJJ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WJJ3146 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . ?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02090150 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WJJ3MF_02090141 . ?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02090149 . ?targetMotifMatchRegionMatchBeginMF_02090149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02090142 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02090150 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJJ3MF_02090139, 1, (STRLEN(?templateMotifCigarP9WJJ3MF_02090139) - STRLEN(REPLACE(?templateMotifCigarP9WJJ3MF_02090139, CONCAT('^(?:-*[^-]){', STR(((121 - ?templateMotifSequenceMatchBeginPositionP9WJJ3140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090141, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090141) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090141, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090141) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) . BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_02090142) - 1) AS ?thisPositionOn32) . BIND(?thisPositionOn32 AS ?thisPositionOn33) . BIND(?this AS ?pfs1t153) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_02090a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP9WJJ3159 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJJ3161 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WJJ3MF_02090154 . ?templateMotifSequenceMatchRegionP9WJJ3159 faldo:begin ?templateMotifSequenceMatchBeginP9WJJ3160 . ?templateMotifSequenceMatchBeginP9WJJ3160 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJJ3155 ; faldo:reference isoform:P9WJJ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WJJ3161 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . ?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02090165 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WJJ3MF_02090156 . ?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02090164 . ?targetMotifMatchRegionMatchBeginMF_02090164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02090157 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02090165 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJJ3MF_02090154, 1, (STRLEN(?templateMotifCigarP9WJJ3MF_02090154) - STRLEN(REPLACE(?templateMotifCigarP9WJJ3MF_02090154, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionP9WJJ3155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090156, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090156) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090156, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090156) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) . BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_02090157) - 1) AS ?thisPositionOn38) . BIND(?thisPositionOn38 AS ?thisPositionOn39) . BIND(?this AS ?pfs1t168) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_02090a35')) AS ?annotation35) . BIND(?this AS ?pfs34) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionP9WJJ3174 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJJ3176 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WJJ3MF_02090169 . ?templateMotifSequenceMatchRegionP9WJJ3174 faldo:begin ?templateMotifSequenceMatchBeginP9WJJ3175 . ?templateMotifSequenceMatchBeginP9WJJ3175 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJJ3170 ; faldo:reference isoform:P9WJJ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WJJ3176 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . ?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02090180 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WJJ3MF_02090171 . ?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02090179 . ?targetMotifMatchRegionMatchBeginMF_02090179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02090172 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02090180 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJJ3MF_02090169, 1, (STRLEN(?templateMotifCigarP9WJJ3MF_02090169) - STRLEN(REPLACE(?templateMotifCigarP9WJJ3MF_02090169, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionP9WJJ3170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090171, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090171) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090171, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090171) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) . BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_02090172) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs1t183) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_02090a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionP9WJJ3189 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJJ3191 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WJJ3MF_02090184 . ?templateMotifSequenceMatchRegionP9WJJ3189 faldo:begin ?templateMotifSequenceMatchBeginP9WJJ3190 . ?templateMotifSequenceMatchBeginP9WJJ3190 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJJ3185 ; faldo:reference isoform:P9WJJ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WJJ3191 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . ?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02090195 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WJJ3MF_02090186 . ?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02090194 . ?targetMotifMatchRegionMatchBeginMF_02090194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02090187 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02090195 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJJ3MF_02090184, 1, (STRLEN(?templateMotifCigarP9WJJ3MF_02090184) - STRLEN(REPLACE(?templateMotifCigarP9WJJ3MF_02090184, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionP9WJJ3185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090186, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090186) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090186, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090186) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) . BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_02090187) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs1t198) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_02090a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch203 faldo:location ?templateMotifSequenceMatchRegionP9WJJ3204 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJJ3206 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WJJ3MF_02090199 . ?templateMotifSequenceMatchRegionP9WJJ3204 faldo:begin ?templateMotifSequenceMatchBeginP9WJJ3205 . ?templateMotifSequenceMatchBeginP9WJJ3205 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJJ3200 ; faldo:reference isoform:P9WJJ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WJJ3206 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . ?targetMotifMatch207 faldo:location ?targetMotifMatchRegionMatch208 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02090210 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WJJ3MF_02090201 . ?targetMotifMatchRegionMatch208 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02090209 . ?targetMotifMatchRegionMatchBeginMF_02090209 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02090202 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02090210 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJJ3MF_02090199, 1, (STRLEN(?templateMotifCigarP9WJJ3MF_02090199) - STRLEN(REPLACE(?templateMotifCigarP9WJJ3MF_02090199, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionP9WJJ3200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090201, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090201) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090201, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090201) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) . BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_02090202) - 1) AS ?thisPositionOn59) . BIND(?thisPositionOn59 AS ?thisPositionOn60) . BIND(?this AS ?pfs1t213) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) . FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02090a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch218 faldo:location ?templateMotifSequenceMatchRegionP9WJJ3219 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJJ3221 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WJJ3MF_02090214 . ?templateMotifSequenceMatchRegionP9WJJ3219 faldo:begin ?templateMotifSequenceMatchBeginP9WJJ3220 . ?templateMotifSequenceMatchBeginP9WJJ3220 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJJ3215 ; faldo:reference isoform:P9WJJ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WJJ3221 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . ?targetMotifMatch222 faldo:location ?targetMotifMatchRegionMatch223 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02090225 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WJJ3MF_02090216 . ?targetMotifMatchRegionMatch223 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02090224 . ?targetMotifMatchRegionMatchBeginMF_02090224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02090217 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02090225 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJJ3MF_02090214, 1, (STRLEN(?templateMotifCigarP9WJJ3MF_02090214) - STRLEN(REPLACE(?templateMotifCigarP9WJJ3MF_02090214, CONCAT('^(?:-*[^-]){', STR(((456 - ?templateMotifSequenceMatchBeginPositionP9WJJ3215) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090216, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090216) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090216, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090216) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) . BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_02090217) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs1t228) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_02090a62')) AS ?annotation62) . BIND(?this AS ?pfs61) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionP9WJJ3234 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJJ3236 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WJJ3MF_02090229 . ?templateMotifSequenceMatchRegionP9WJJ3234 faldo:begin ?templateMotifSequenceMatchBeginP9WJJ3235 . ?templateMotifSequenceMatchBeginP9WJJ3235 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJJ3230 ; faldo:reference isoform:P9WJJ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WJJ3236 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . ?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02090240 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WJJ3MF_02090231 . ?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02090239 . ?targetMotifMatchRegionMatchBeginMF_02090239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02090232 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02090240 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJJ3MF_02090229, 1, (STRLEN(?templateMotifCigarP9WJJ3MF_02090229) - STRLEN(REPLACE(?templateMotifCigarP9WJJ3MF_02090229, CONCAT('^(?:-*[^-]){', STR(((480 - ?templateMotifSequenceMatchBeginPositionP9WJJ3230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090231, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090231) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090231, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090231) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) . BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_02090232) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs1t243) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_02090a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionP9WJJ3249 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJJ3251 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WJJ3MF_02090244 . ?templateMotifSequenceMatchRegionP9WJJ3249 faldo:begin ?templateMotifSequenceMatchBeginP9WJJ3250 . ?templateMotifSequenceMatchBeginP9WJJ3250 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJJ3245 ; faldo:reference isoform:P9WJJ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WJJ3251 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . ?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02090255 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WJJ3MF_02090246 . ?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02090254 . ?targetMotifMatchRegionMatchBeginMF_02090254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02090247 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02090255 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJJ3MF_02090244, 1, (STRLEN(?templateMotifCigarP9WJJ3MF_02090244) - STRLEN(REPLACE(?templateMotifCigarP9WJJ3MF_02090244, CONCAT('^(?:-*[^-]){', STR(((485 - ?templateMotifSequenceMatchBeginPositionP9WJJ3245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090246, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090246) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090246, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090246) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) . BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_02090247) - 1) AS ?thisPositionOn80) . BIND(?thisPositionOn80 AS ?thisPositionOn81) . BIND(?this AS ?pfs1t258) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_02090a76')) AS ?annotation76) . BIND(?this AS ?pfs75) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch263 faldo:location ?templateMotifSequenceMatchRegionP9WJJ3264 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJJ3266 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WJJ3MF_02090259 . ?templateMotifSequenceMatchRegionP9WJJ3264 faldo:begin ?templateMotifSequenceMatchBeginP9WJJ3265 . ?templateMotifSequenceMatchBeginP9WJJ3265 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJJ3260 ; faldo:reference isoform:P9WJJ3-1 . ?templateMotifSequenceProfileAlignmentOperationP9WJJ3266 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . ?targetMotifMatch267 faldo:location ?targetMotifMatchRegionMatch268 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02090270 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WJJ3MF_02090261 . ?targetMotifMatchRegionMatch268 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02090269 . ?targetMotifMatchRegionMatchBeginMF_02090269 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02090262 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02090270 edam:has_input signature:MF_02090 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJJ3MF_02090259, 1, (STRLEN(?templateMotifCigarP9WJJ3MF_02090259) - STRLEN(REPLACE(?templateMotifCigarP9WJJ3MF_02090259, CONCAT('^(?:-*[^-]){', STR(((635 - ?templateMotifSequenceMatchBeginPositionP9WJJ3260) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1271) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090261, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090261) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJJ3MF_02090261, 1, (STRLEN(?targetMotifMatchCigarP9WJJ3MF_02090261) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJJ3MF_02090261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), '')))), '[^-]', ''))) AS ?step2272) . BIND(((?step2272 + ?targetMotifMatchRegionMatchBeginPositionMF_02090262) - 1) AS ?thisPositionOn87) . BIND(?thisPositionOn87 AS ?thisPositionOn88) . BIND(?this AS ?pfs1t273) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_02090a83')) AS ?annotation83) . BIND(?this AS ?pfs82) . } }