CONSTRUCT { _:828311 up:source unirule:MF_03140 . _:828312 up:source unirule:MF_03140 . _:828313 up:source unirule:MF_03140 . _:828314 up:source unirule:MF_03140 . _:828315 up:source unirule:MF_03140 . _:828316 up:source unirule:MF_03140 . _:828317 up:source unirule:MF_03140 . _:828318 up:source unirule:MF_03140 . _:828319 up:source unirule:MF_03140 . _:828320 up:source unirule:MF_03140 . _:828321 up:source unirule:MF_03140 . _:828322 up:source unirule:MF_03140 . _:828323 up:source unirule:MF_03140 . _:828324 up:source unirule:MF_03140 . _:828325 up:source unirule:MF_03140 . _:828326 up:source unirule:MF_03140 . _:828327 up:source unirule:MF_03140 . _:828328 up:source unirule:MF_03140 . _:828329 up:source unirule:MF_03140 . _:828330 up:source unirule:MF_03140 . _:828331 up:source unirule:MF_03140 . _:828332 up:source unirule:MF_03140 . _:828333 up:source unirule:MF_03140 . _:828334 up:source unirule:MF_03140 . _:828335 up:source unirule:MF_03140 . _:828336 up:source unirule:MF_03140 . _:828337 up:source unirule:MF_03140 . _:828338 up:source unirule:MF_03140 . _:828339 up:source unirule:MF_03140 . _:828340 up:source unirule:MF_03140 . _:828341 up:source unirule:MF_03140 . _:828342 up:source unirule:MF_03140 . _:828343 up:source unirule:MF_03140 . _:828344 up:source unirule:MF_03140 . _:828345 up:source unirule:MF_03140 . _:828346 up:source unirule:MF_03140 . _:828347 up:source unirule:MF_03140 . _:828348 up:source unirule:MF_03140 . _:828349 up:source unirule:MF_03140 . _:828350 up:source unirule:MF_03140 . _:828351 up:source unirule:MF_03140 . _:828352 up:source unirule:MF_03140 . _:828353 up:source unirule:MF_03140 . _:828354 up:source unirule:MF_03140 . _:828355 up:source unirule:MF_03140 . _:828356 up:source unirule:MF_03140 . _:828357 up:source unirule:MF_03140 . _:828358 up:source unirule:MF_03140 . _:828359 up:source unirule:MF_03140 . _:828360 up:source unirule:MF_03140 . _:828361 up:source unirule:MF_03140 . _:828362 up:source unirule:MF_03140 . ?this up:alternativeName ?name1 ; up:annotation ?annotation2 , ?annotation3 , ?annotation4 , ?annotation8 ; up:classifiedWith GO:0000287 , GO:0003677 , GO:0005634 , GO:0005739 , GO:0006284 , GO:0008409 , GO:0017108 , GO:0043137 , keyword:227 , keyword:234 , keyword:235 , keyword:255 , keyword:269 , keyword:378 , keyword:460 , keyword:479 , keyword:496 , keyword:539 , keyword:540 , keyword:597 ; up:recommendedName ?name0 . ?name0 up:ecName '3.1.-.-' ; up:fullName 'Flap endonuclease 1' ; up:shortName 'FEN-1' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Flap structure-specific endonuclease 1' ; rdf:type up:Structured_Name . ?annotation2 a up:Function_Annotation ; rdfs:comment "Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structures that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA." . ?annotation3 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 2 magnesium ions per subunit. They probably participate in the reaction catalyzed by the enzyme. May bind an additional third magnesium ion after substrate binding.' . ?annotation4 a up:Subcellular_Location_Annotation ; rdfs:comment 'Resides mostly in the nucleoli and relocalizes to the nucleoplasm upon DNA damage' . ?annotation4li5 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation4li6 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation4li7 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the XPG/RAD2 endonuclease family. FEN1 subfamily.' . ?case9 up:classifiedWith keyword:488 . ?case10 up:classifiedWith keyword:7 . ?pfs22 up:annotation ?annotation23 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb24 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb30 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfs34 up:annotation ?annotation35 . ?annotation35 faldo:begin ?pfsb36 ; faldo:end ?pfse37 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb36 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse37 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb42 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfs46 up:annotation ?annotation47 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine; by CDK2' . ?pfsb48 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfs52 up:annotation ?annotation53 . ?annotation53 faldo:begin ?pfsb54 ; faldo:end ?pfse55 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Symmetric dimethylarginine; by PRMT5' . ?pfsb54 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse55 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Symmetric dimethylarginine; by PRMT5' . ?pfsb60 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfs64 up:annotation ?annotation65 . ?annotation65 faldo:begin ?pfsb66 ; faldo:end ?pfse67 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Symmetric dimethylarginine; by PRMT5' . ?pfsb66 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?pfse67 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?pfs70 up:annotation ?annotation71 . ?annotation71 faldo:begin ?pfsb72 ; faldo:end ?pfse73 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Symmetric dimethylarginine; by PRMT5' . ?pfsb72 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?pfse73 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?pfs76 up:annotation ?annotation77 . ?annotation77 faldo:begin ?pfsb78 ; faldo:end ?pfse79 ; rdf:type up:Region_Annotation ; rdfs:comment 'N-domain' . ?pfsb78 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?pfse79 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . ?pfs82 up:annotation ?annotation83 . ?annotation83 faldo:begin ?pfsb84 ; faldo:end ?pfse85 ; rdf:type up:Region_Annotation ; rdfs:comment 'I-domain' . ?pfsb84 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . ?pfse85 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?pfs88 up:annotation ?annotation89 . ?annotation89 faldo:begin ?pfsb90 ; faldo:end ?pfse91 ; rdf:type up:Region_Annotation ; rdfs:comment 'Interaction with PCNA' . ?pfsb90 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?pfse91 faldo:position ?thisPositionOn93 ; rdf:type faldo:ExactPosition . ?pfs94 up:annotation ?annotation95 . ?annotation95 faldo:begin ?pfsb96 ; faldo:end ?pfse97 ; up:ligand ?ligand98 ; rdf:type up:Binding_Site_Annotation . ?pfsb96 faldo:position ?thisPositionOn99 ; rdf:type faldo:ExactPosition . ?pfse97 faldo:position ?thisPositionOn100 ; rdf:type faldo:ExactPosition . ?ligand98 rdfs:subClassOf chebi:18420 . ?pfs101 up:annotation ?annotation102 . ?annotation102 faldo:begin ?pfsb103 ; faldo:end ?pfse104 ; up:ligand ?ligand105 ; rdf:type up:Binding_Site_Annotation . ?pfsb103 faldo:position ?thisPositionOn106 ; rdf:type faldo:ExactPosition . ?pfse104 faldo:position ?thisPositionOn107 ; rdf:type faldo:ExactPosition . ?ligand105 rdfs:subClassOf chebi:18420 . ?pfs108 up:annotation ?annotation109 . ?annotation109 faldo:begin ?pfsb110 ; faldo:end ?pfse111 ; up:ligand ?ligand112 ; rdf:type up:Binding_Site_Annotation . ?pfsb110 faldo:position ?thisPositionOn113 ; rdf:type faldo:ExactPosition . ?pfse111 faldo:position ?thisPositionOn114 ; rdf:type faldo:ExactPosition . ?ligand112 rdfs:subClassOf chebi:18420 . ?pfs115 up:annotation ?annotation116 . ?annotation116 faldo:begin ?pfsb117 ; faldo:end ?pfse118 ; up:ligand ?ligand119 ; rdf:type up:Binding_Site_Annotation . ?pfsb117 faldo:position ?thisPositionOn120 ; rdf:type faldo:ExactPosition . ?pfse118 faldo:position ?thisPositionOn121 ; rdf:type faldo:ExactPosition . ?ligand119 rdfs:subClassOf chebi:18420 . ?pfs122 up:annotation ?annotation123 . ?annotation123 faldo:begin ?pfsb124 ; faldo:end ?pfse125 ; up:ligand ?ligand126 ; rdf:type up:Binding_Site_Annotation . ?pfsb124 faldo:position ?thisPositionOn127 ; rdf:type faldo:ExactPosition . ?pfse125 faldo:position ?thisPositionOn128 ; rdf:type faldo:ExactPosition . ?ligand126 rdfs:subClassOf chebi:18420 . ?pfs129 up:annotation ?annotation130 . ?annotation130 faldo:begin ?pfsb131 ; faldo:end ?pfse132 ; up:ligand ?ligand133 ; rdf:type up:Binding_Site_Annotation . ?pfsb131 faldo:position ?thisPositionOn134 ; rdf:type faldo:ExactPosition . ?pfse132 faldo:position ?thisPositionOn135 ; rdf:type faldo:ExactPosition . ?ligand133 rdfs:subClassOf chebi:18420 . ?pfs136 up:annotation ?annotation137 . ?annotation137 faldo:begin ?pfsb138 ; faldo:end ?pfse139 ; up:ligand ?ligand140 ; rdf:type up:Binding_Site_Annotation . ?pfsb138 faldo:position ?thisPositionOn141 ; rdf:type faldo:ExactPosition . ?pfse139 faldo:position ?thisPositionOn142 ; rdf:type faldo:ExactPosition . ?ligand140 rdfs:subClassOf chebi:18420 . ?pfs143 up:annotation ?annotation144 . ?annotation144 faldo:begin ?pfsb145 ; faldo:end ?pfse146 ; up:ligand ?ligand147 ; rdf:type up:Binding_Site_Annotation . ?pfsb145 faldo:position ?thisPositionOn148 ; rdf:type faldo:ExactPosition . ?pfse146 faldo:position ?thisPositionOn149 ; rdf:type faldo:ExactPosition . ?ligand147 rdfs:subClassOf chebi:16991 . ?pfs150 up:annotation ?annotation151 . ?annotation151 faldo:begin ?pfsb152 ; faldo:end ?pfse153 ; up:ligand ?ligand154 ; rdf:type up:Binding_Site_Annotation . ?pfsb152 faldo:position ?thisPositionOn155 ; rdf:type faldo:ExactPosition . ?pfse153 faldo:position ?thisPositionOn156 ; rdf:type faldo:ExactPosition . ?ligand154 rdfs:subClassOf chebi:16991 . ?pfs157 up:annotation ?annotation158 . ?annotation158 faldo:begin ?pfsb159 ; faldo:end ?pfse160 ; up:ligand ?ligand161 ; rdf:type up:Binding_Site_Annotation . ?pfsb159 faldo:position ?thisPositionOn162 ; rdf:type faldo:ExactPosition . ?pfse160 faldo:position ?thisPositionOn163 ; rdf:type faldo:ExactPosition . ?ligand161 rdfs:subClassOf chebi:16991 . ?pfs164 up:annotation ?annotation165 . ?annotation165 faldo:begin ?pfsb166 ; faldo:end ?pfse167 ; up:ligand ?ligand168 ; rdf:type up:Binding_Site_Annotation . ?pfsb166 faldo:position ?thisPositionOn169 ; rdf:type faldo:ExactPosition . ?pfse167 faldo:position ?thisPositionOn170 ; rdf:type faldo:ExactPosition . ?ligand168 rdfs:subClassOf chebi:16991 . ?pfs171 up:annotation ?annotation172 . ?annotation172 faldo:begin ?pfsb173 ; faldo:end ?pfse174 ; up:ligand ?ligand175 ; rdf:type up:Binding_Site_Annotation . ?pfsb173 faldo:position ?thisPositionOn176 ; rdf:type faldo:ExactPosition . ?pfse174 faldo:position ?thisPositionOn177 ; rdf:type faldo:ExactPosition . ?ligand175 rdfs:subClassOf chebi:16991 . _:828363 a rdf:Statement ; up:attribution _:828311 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:828364 a rdf:Statement ; up:attribution _:828312 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:828365 a rdf:Statement ; up:attribution _:828313 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:828366 a rdf:Statement ; up:attribution _:828314 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:828367 a rdf:Statement ; up:attribution _:828315 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:828368 a rdf:Statement ; up:attribution _:828316 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:828369 a rdf:Statement ; up:attribution _:828317 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:255 . _:828370 a rdf:Statement ; up:attribution _:828318 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:269 . _:828371 a rdf:Statement ; up:attribution _:828319 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:227 . _:828372 a rdf:Statement ; up:attribution _:828320 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:234 . _:828373 a rdf:Statement ; up:attribution _:828321 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:235 . _:828374 a rdf:Statement ; up:attribution _:828322 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:828375 a rdf:Statement ; up:attribution _:828323 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:828376 a rdf:Statement ; up:attribution _:828324 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:828377 a rdf:Statement ; up:attribution _:828325 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:496 . _:828378 a rdf:Statement ; up:attribution _:828326 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:540 . _:828379 a rdf:Statement ; up:attribution _:828327 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:539 . _:828380 a rdf:Statement ; up:attribution _:828328 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:597 . _:828381 a rdf:Statement ; up:attribution _:828329 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005634 . _:828382 a rdf:Statement ; up:attribution _:828330 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005739 . _:828383 a rdf:Statement ; up:attribution _:828331 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003677 . _:828384 a rdf:Statement ; up:attribution _:828332 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008409 . _:828385 a rdf:Statement ; up:attribution _:828333 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0017108 . _:828386 a rdf:Statement ; up:attribution _:828334 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:828387 a rdf:Statement ; up:attribution _:828335 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006284 . _:828388 a rdf:Statement ; up:attribution _:828336 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0043137 . _:828389 a rdf:Statement ; up:attribution _:828337 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object keyword:488 . _:828390 a rdf:Statement ; up:attribution _:828338 ; rdf:subject ?case10 ; rdf:predicate up:classifiedWith ; rdf:object keyword:7 . _:828391 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:828392 a rdf:Statement ; up:attribution _:828339 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:828393 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:828394 a rdf:Statement ; up:attribution _:828340 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:828395 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:828396 a rdf:Statement ; up:attribution _:828341 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:828397 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:828398 a rdf:Statement ; up:attribution _:828342 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:828399 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:828400 a rdf:Statement ; up:attribution _:828343 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:828401 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:828402 a rdf:Statement ; up:attribution _:828344 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:828403 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:828404 a rdf:Statement ; up:attribution _:828345 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:828405 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:828406 a rdf:Statement ; up:attribution _:828346 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:828407 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:828408 a rdf:Statement ; up:attribution _:828347 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:828409 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs76 ; rdf:predicate up:annotation ; rdf:object ?annotation77 . _:828410 a rdf:Statement ; up:attribution _:828348 ; rdf:subject ?pfs76 ; rdf:predicate up:annotation ; rdf:object ?annotation77 . _:828411 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:828412 a rdf:Statement ; up:attribution _:828349 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:828413 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs88 ; rdf:predicate up:annotation ; rdf:object ?annotation89 . _:828414 a rdf:Statement ; up:attribution _:828350 ; rdf:subject ?pfs88 ; rdf:predicate up:annotation ; rdf:object ?annotation89 . _:828415 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs94 ; rdf:predicate up:annotation ; rdf:object ?annotation95 . _:828416 a rdf:Statement ; up:attribution _:828351 ; rdf:subject ?pfs94 ; rdf:predicate up:annotation ; rdf:object ?annotation95 . _:828417 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs101 ; rdf:predicate up:annotation ; rdf:object ?annotation102 . _:828418 a rdf:Statement ; up:attribution _:828352 ; rdf:subject ?pfs101 ; rdf:predicate up:annotation ; rdf:object ?annotation102 . _:828419 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs108 ; rdf:predicate up:annotation ; rdf:object ?annotation109 . _:828420 a rdf:Statement ; up:attribution _:828353 ; rdf:subject ?pfs108 ; rdf:predicate up:annotation ; rdf:object ?annotation109 . _:828421 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs115 ; rdf:predicate up:annotation ; rdf:object ?annotation116 . _:828422 a rdf:Statement ; up:attribution _:828354 ; rdf:subject ?pfs115 ; rdf:predicate up:annotation ; rdf:object ?annotation116 . _:828423 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs122 ; rdf:predicate up:annotation ; rdf:object ?annotation123 . _:828424 a rdf:Statement ; up:attribution _:828355 ; rdf:subject ?pfs122 ; rdf:predicate up:annotation ; rdf:object ?annotation123 . _:828425 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs129 ; rdf:predicate up:annotation ; rdf:object ?annotation130 . _:828426 a rdf:Statement ; up:attribution _:828356 ; rdf:subject ?pfs129 ; rdf:predicate up:annotation ; rdf:object ?annotation130 . _:828427 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs136 ; rdf:predicate up:annotation ; rdf:object ?annotation137 . _:828428 a rdf:Statement ; up:attribution _:828357 ; rdf:subject ?pfs136 ; rdf:predicate up:annotation ; rdf:object ?annotation137 . _:828429 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs143 ; rdf:predicate up:annotation ; rdf:object ?annotation144 . _:828430 a rdf:Statement ; up:attribution _:828358 ; rdf:subject ?pfs143 ; rdf:predicate up:annotation ; rdf:object ?annotation144 . _:828431 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs150 ; rdf:predicate up:annotation ; rdf:object ?annotation151 . _:828432 a rdf:Statement ; up:attribution _:828359 ; rdf:subject ?pfs150 ; rdf:predicate up:annotation ; rdf:object ?annotation151 . _:828433 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs157 ; rdf:predicate up:annotation ; rdf:object ?annotation158 . _:828434 a rdf:Statement ; up:attribution _:828360 ; rdf:subject ?pfs157 ; rdf:predicate up:annotation ; rdf:object ?annotation158 . _:828435 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs164 ; rdf:predicate up:annotation ; rdf:object ?annotation165 . _:828436 a rdf:Statement ; up:attribution _:828361 ; rdf:subject ?pfs164 ; rdf:predicate up:annotation ; rdf:object ?annotation165 . _:828437 a rdf:Statement ; up:source unirule:MF_03140 ; rdf:subject ?pfs171 ; rdf:predicate up:annotation ; rdf:object ?annotation172 . _:828438 a rdf:Statement ; up:attribution _:828362 ; rdf:subject ?pfs171 ; rdf:predicate up:annotation ; rdf:object ?annotation172 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03140 #Rule MF_03140 Created by:pedruzzi on:2010-11-18 Modified by:ecastro on:2022-11-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00614 . ?thisOrganism rdfs:subClassOf+ taxon:2759 . BIND(URI(CONCAT(STR(?this), '#MF_03140a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_03140a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_03140a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_03140a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_03140a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_03140a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP39748183 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748185 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614178 . ?templateMotifSequenceMatchRegionP39748183 faldo:begin ?templateMotifSequenceMatchBeginP39748184 . ?templateMotifSequenceMatchBeginP39748184 faldo:position ?templateMotifSequenceMatchBeginPositionP39748179 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748185 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614189 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614180 . ?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614188 . ?targetMotifMatchRegionMatchBeginMF_00614188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614181 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614189 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagacet) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614178, 1, (STRLEN(?templateMotifCigarP39748MF_00614178) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614178, CONCAT('^(?:-*[^-]){', STR(((354 - ?templateMotifSequenceMatchBeginPositionP39748179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614180, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614180) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614180, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614180) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) . BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_00614181) - 1) AS ?thisPositionOn26) . BIND(?thisPositionOn26 AS ?thisPositionOn27) . BIND(?this AS ?pfs1t192) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a23')) AS ?annotation23) . BIND(?this AS ?pfs22) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch197 faldo:location ?templateMotifSequenceMatchRegionP39748198 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748200 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614193 . ?templateMotifSequenceMatchRegionP39748198 faldo:begin ?templateMotifSequenceMatchBeginP39748199 . ?templateMotifSequenceMatchBeginP39748199 faldo:position ?templateMotifSequenceMatchBeginPositionP39748194 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748200 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch201 faldo:location ?targetMotifMatchRegionMatch202 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614204 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614195 . ?targetMotifMatchRegionMatch202 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614203 . ?targetMotifMatchRegionMatchBeginMF_00614203 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614196 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614204 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagacet) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614193, 1, (STRLEN(?templateMotifCigarP39748MF_00614193) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614193, CONCAT('^(?:-*[^-]){', STR(((375 - ?templateMotifSequenceMatchBeginPositionP39748194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614195, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614195) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614195, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614195) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) . BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_00614196) - 1) AS ?thisPositionOn32) . BIND(?thisPositionOn32 AS ?thisPositionOn33) . BIND(?this AS ?pfs1t207) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch212 faldo:location ?templateMotifSequenceMatchRegionP39748213 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748215 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614208 . ?templateMotifSequenceMatchRegionP39748213 faldo:begin ?templateMotifSequenceMatchBeginP39748214 . ?templateMotifSequenceMatchBeginP39748214 faldo:position ?templateMotifSequenceMatchBeginPositionP39748209 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748215 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch216 faldo:location ?targetMotifMatchRegionMatch217 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614219 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614210 . ?targetMotifMatchRegionMatch217 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614218 . ?targetMotifMatchRegionMatchBeginMF_00614218 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614211 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614219 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagacet) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614208, 1, (STRLEN(?templateMotifCigarP39748MF_00614208) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614208, CONCAT('^(?:-*[^-]){', STR(((377 - ?templateMotifSequenceMatchBeginPositionP39748209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614210, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614210) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614210, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614210) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) . BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_00614211) - 1) AS ?thisPositionOn38) . BIND(?thisPositionOn38 AS ?thisPositionOn39) . BIND(?this AS ?pfs1t222) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a35')) AS ?annotation35) . BIND(?this AS ?pfs34) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch227 faldo:location ?templateMotifSequenceMatchRegionP39748228 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748230 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614223 . ?templateMotifSequenceMatchRegionP39748228 faldo:begin ?templateMotifSequenceMatchBeginP39748229 . ?templateMotifSequenceMatchBeginP39748229 faldo:position ?templateMotifSequenceMatchBeginPositionP39748224 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748230 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch231 faldo:location ?targetMotifMatchRegionMatch232 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614234 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614225 . ?targetMotifMatchRegionMatch232 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614233 . ?targetMotifMatchRegionMatchBeginMF_00614233 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614226 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614234 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagacet) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614223, 1, (STRLEN(?templateMotifCigarP39748MF_00614223) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614223, CONCAT('^(?:-*[^-]){', STR(((380 - ?templateMotifSequenceMatchBeginPositionP39748224) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1235) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614225, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614225) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614225, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614225) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), '')))), '[^-]', ''))) AS ?step2236) . BIND(((?step2236 + ?targetMotifMatchRegionMatchBeginPositionMF_00614226) - 1) AS ?thisPositionOn44) . BIND(?thisPositionOn44 AS ?thisPositionOn45) . BIND(?this AS ?pfs1t237) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch242 faldo:location ?templateMotifSequenceMatchRegionP39748243 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748245 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614238 . ?templateMotifSequenceMatchRegionP39748243 faldo:begin ?templateMotifSequenceMatchBeginP39748244 . ?templateMotifSequenceMatchBeginP39748244 faldo:position ?templateMotifSequenceMatchBeginPositionP39748239 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748245 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch246 faldo:location ?targetMotifMatchRegionMatch247 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614249 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614240 . ?targetMotifMatchRegionMatch247 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614248 . ?targetMotifMatchRegionMatchBeginMF_00614248 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614241 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614249 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagphospho187) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614238, 1, (STRLEN(?templateMotifCigarP39748MF_00614238) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614238, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionP39748239) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1250) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614240, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614240) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614240, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614240) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), '')))), '[^-]', ''))) AS ?step2251) . BIND(((?step2251 + ?targetMotifMatchRegionMatchBeginPositionMF_00614241) - 1) AS ?thisPositionOn50) . BIND(?thisPositionOn50 AS ?thisPositionOn51) . BIND(?this AS ?pfs2t252) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse49) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a47')) AS ?annotation47) . BIND(?this AS ?pfs46) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch257 faldo:location ?templateMotifSequenceMatchRegionP39748258 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748260 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614253 . ?templateMotifSequenceMatchRegionP39748258 faldo:begin ?templateMotifSequenceMatchBeginP39748259 . ?templateMotifSequenceMatchBeginP39748259 faldo:position ?templateMotifSequenceMatchBeginPositionP39748254 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748260 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch261 faldo:location ?targetMotifMatchRegionMatch262 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614264 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614255 . ?targetMotifMatchRegionMatch262 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614263 . ?targetMotifMatchRegionMatchBeginMF_00614263 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614256 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614264 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagmeth192) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614253, 1, (STRLEN(?templateMotifCigarP39748MF_00614253) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614253, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionP39748254) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1265) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614255, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614255) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614255, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614255) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), '')))), '[^-]', ''))) AS ?step2266) . BIND(((?step2266 + ?targetMotifMatchRegionMatchBeginPositionMF_00614256) - 1) AS ?thisPositionOn56) . BIND(?thisPositionOn56 AS ?thisPositionOn57) . BIND(?this AS ?pfs3t267) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse55) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a53')) AS ?annotation53) . BIND(?this AS ?pfs52) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch272 faldo:location ?templateMotifSequenceMatchRegionP39748273 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748275 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614268 . ?templateMotifSequenceMatchRegionP39748273 faldo:begin ?templateMotifSequenceMatchBeginP39748274 . ?templateMotifSequenceMatchBeginP39748274 faldo:position ?templateMotifSequenceMatchBeginPositionP39748269 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748275 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch276 faldo:location ?targetMotifMatchRegionMatch277 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614279 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614270 . ?targetMotifMatchRegionMatch277 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614278 . ?targetMotifMatchRegionMatchBeginMF_00614278 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614271 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614279 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagmeth) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614268, 1, (STRLEN(?templateMotifCigarP39748MF_00614268) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614268, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP39748269) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1280) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614270, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614270) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614270, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614270) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1280), '}'), '')))), '[^-]', ''))) AS ?step2281) . BIND(((?step2281 + ?targetMotifMatchRegionMatchBeginPositionMF_00614271) - 1) AS ?thisPositionOn62) . BIND(?thisPositionOn62 AS ?thisPositionOn63) . BIND(?this AS ?pfs4t282) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse61) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch287 faldo:location ?templateMotifSequenceMatchRegionP39748288 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748290 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614283 . ?templateMotifSequenceMatchRegionP39748288 faldo:begin ?templateMotifSequenceMatchBeginP39748289 . ?templateMotifSequenceMatchBeginP39748289 faldo:position ?templateMotifSequenceMatchBeginPositionP39748284 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748290 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch291 faldo:location ?targetMotifMatchRegionMatch292 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614294 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614285 . ?targetMotifMatchRegionMatch292 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614293 . ?targetMotifMatchRegionMatchBeginMF_00614293 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614286 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614294 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagmeth) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614283, 1, (STRLEN(?templateMotifCigarP39748MF_00614283) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614283, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionP39748284) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1295) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614285, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614285) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614285, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614285) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), '')))), '[^-]', ''))) AS ?step2296) . BIND(((?step2296 + ?targetMotifMatchRegionMatchBeginPositionMF_00614286) - 1) AS ?thisPositionOn68) . BIND(?thisPositionOn68 AS ?thisPositionOn69) . BIND(?this AS ?pfs4t297) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb66) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse67) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a65')) AS ?annotation65) . BIND(?this AS ?pfs64) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch302 faldo:location ?templateMotifSequenceMatchRegionP39748303 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748305 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614298 . ?templateMotifSequenceMatchRegionP39748303 faldo:begin ?templateMotifSequenceMatchBeginP39748304 . ?templateMotifSequenceMatchBeginP39748304 faldo:position ?templateMotifSequenceMatchBeginPositionP39748299 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748305 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch306 faldo:location ?targetMotifMatchRegionMatch307 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614309 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614300 . ?targetMotifMatchRegionMatch307 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614308 . ?targetMotifMatchRegionMatchBeginMF_00614308 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614301 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614309 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagmeth) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614298, 1, (STRLEN(?templateMotifCigarP39748MF_00614298) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614298, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP39748299) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1310) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614300, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614300) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614300, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614300) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), '')))), '[^-]', ''))) AS ?step2311) . BIND(((?step2311 + ?targetMotifMatchRegionMatchBeginPositionMF_00614301) - 1) AS ?thisPositionOn74) . BIND(?thisPositionOn74 AS ?thisPositionOn75) . BIND(?this AS ?pfs4t312) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb72) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse73) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a71')) AS ?annotation71) . BIND(?this AS ?pfs70) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch317 faldo:location ?templateMotifSequenceMatchRegionP39748318 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748320 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614313 . ?templateMotifSequenceMatchRegionP39748318 faldo:begin ?templateMotifSequenceMatchBeginP39748319 . ?templateMotifSequenceMatchBeginP39748319 faldo:position ?templateMotifSequenceMatchBeginPositionP39748314 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748320 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch321 faldo:location ?targetMotifMatchRegionMatch322 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614324 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614315 . ?targetMotifMatchRegionMatch322 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614323 . ?targetMotifMatchRegionMatchBeginMF_00614323 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614316 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614324 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614313, 1, (STRLEN(?templateMotifCigarP39748MF_00614313) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614313, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP39748314) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1325) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614315, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614315) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614315, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614315) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), '')))), '[^-]', ''))) AS ?step2326) . BIND(((?step2326 + ?targetMotifMatchRegionMatchBeginPositionMF_00614316) - 1) AS ?thisPositionOn80) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614313, 1, (STRLEN(?templateMotifCigarP39748MF_00614313) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614313, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP39748314) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614315, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614315) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614315, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614315) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) . BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_00614316) - 1) AS ?thisPositionOn81) . BIND(?this AS ?pfs5t329) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb78) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse79) . FILTER ((BOUND(?thisPositionOn80) && BOUND(?thisPositionOn81))) . BIND(URI(CONCAT(STR(?this), '#MF_03140a77')) AS ?annotation77) . BIND(?this AS ?pfs76) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch334 faldo:location ?templateMotifSequenceMatchRegionP39748335 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748337 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614330 . ?templateMotifSequenceMatchRegionP39748335 faldo:begin ?templateMotifSequenceMatchBeginP39748336 . ?templateMotifSequenceMatchBeginP39748336 faldo:position ?templateMotifSequenceMatchBeginPositionP39748331 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748337 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch338 faldo:location ?targetMotifMatchRegionMatch339 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614341 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614332 . ?targetMotifMatchRegionMatch339 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614340 . ?targetMotifMatchRegionMatchBeginMF_00614340 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614333 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614341 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614330, 1, (STRLEN(?templateMotifCigarP39748MF_00614330) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614330, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionP39748331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1342) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614332, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614332) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614332, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614332) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), '')))), '[^-]', ''))) AS ?step2343) . BIND(((?step2343 + ?targetMotifMatchRegionMatchBeginPositionMF_00614333) - 1) AS ?thisPositionOn86) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614330, 1, (STRLEN(?templateMotifCigarP39748MF_00614330) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614330, CONCAT('^(?:-*[^-]){', STR(((253 - ?templateMotifSequenceMatchBeginPositionP39748331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1344) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614332, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614332) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614332, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614332) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), '')))), '[^-]', ''))) AS ?step2345) . BIND(((?step2345 + ?targetMotifMatchRegionMatchBeginPositionMF_00614333) - 1) AS ?thisPositionOn87) . BIND(?this AS ?pfs5t346) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb84) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse85) . FILTER ((BOUND(?thisPositionOn86) && BOUND(?thisPositionOn87))) . BIND(URI(CONCAT(STR(?this), '#MF_03140a83')) AS ?annotation83) . BIND(?this AS ?pfs82) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch351 faldo:location ?templateMotifSequenceMatchRegionP39748352 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748354 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614347 . ?templateMotifSequenceMatchRegionP39748352 faldo:begin ?templateMotifSequenceMatchBeginP39748353 . ?templateMotifSequenceMatchBeginP39748353 faldo:position ?templateMotifSequenceMatchBeginPositionP39748348 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748354 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch355 faldo:location ?targetMotifMatchRegionMatch356 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614358 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614349 . ?targetMotifMatchRegionMatch356 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614357 . ?targetMotifMatchRegionMatchBeginMF_00614357 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614350 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614358 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614347, 1, (STRLEN(?templateMotifCigarP39748MF_00614347) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614347, CONCAT('^(?:-*[^-]){', STR(((336 - ?templateMotifSequenceMatchBeginPositionP39748348) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1359) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614349, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614349) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614349, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614349) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), '')))), '[^-]', ''))) AS ?step2360) . BIND(((?step2360 + ?targetMotifMatchRegionMatchBeginPositionMF_00614350) - 1) AS ?thisPositionOn92) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614347, 1, (STRLEN(?templateMotifCigarP39748MF_00614347) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614347, CONCAT('^(?:-*[^-]){', STR(((344 - ?templateMotifSequenceMatchBeginPositionP39748348) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1361) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614349, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614349) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614349, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614349) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), '')))), '[^-]', ''))) AS ?step2362) . BIND(((?step2362 + ?targetMotifMatchRegionMatchBeginPositionMF_00614350) - 1) AS ?thisPositionOn93) . BIND(?this AS ?pfs5t363) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb90) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse91) . FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]Q[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)[ILM][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)F[FYLI]', SUBSTR(?thisSequenceValue, ?thisPositionOn92, (?thisPositionOn93 - ?thisPositionOn92)))) . BIND(URI(CONCAT(STR(?this), '#MF_03140a89')) AS ?annotation89) . BIND(?this AS ?pfs88) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch368 faldo:location ?templateMotifSequenceMatchRegionP39748369 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748371 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614364 . ?templateMotifSequenceMatchRegionP39748369 faldo:begin ?templateMotifSequenceMatchBeginP39748370 . ?templateMotifSequenceMatchBeginP39748370 faldo:position ?templateMotifSequenceMatchBeginPositionP39748365 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748371 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch372 faldo:location ?targetMotifMatchRegionMatch373 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614375 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614366 . ?targetMotifMatchRegionMatch373 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614374 . ?targetMotifMatchRegionMatchBeginMF_00614374 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614367 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614375 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614364, 1, (STRLEN(?templateMotifCigarP39748MF_00614364) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614364, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP39748365) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1376) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614366, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614366) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1376), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614366, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614366) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1376), '}'), '')))), '[^-]', ''))) AS ?step2377) . BIND(((?step2377 + ?targetMotifMatchRegionMatchBeginPositionMF_00614367) - 1) AS ?thisPositionOn99) . BIND(?thisPositionOn99 AS ?thisPositionOn100) . BIND(?this AS ?pfs5t378) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb96) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse97) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a95')) AS ?annotation95) . BIND(?this AS ?pfs94) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch383 faldo:location ?templateMotifSequenceMatchRegionP39748384 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748386 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614379 . ?templateMotifSequenceMatchRegionP39748384 faldo:begin ?templateMotifSequenceMatchBeginP39748385 . ?templateMotifSequenceMatchBeginP39748385 faldo:position ?templateMotifSequenceMatchBeginPositionP39748380 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748386 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch387 faldo:location ?targetMotifMatchRegionMatch388 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614390 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614381 . ?targetMotifMatchRegionMatch388 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614389 . ?targetMotifMatchRegionMatchBeginMF_00614389 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614382 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614390 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614379, 1, (STRLEN(?templateMotifCigarP39748MF_00614379) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614379, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionP39748380) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1391) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614381, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614381) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1391), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614381, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614381) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1391), '}'), '')))), '[^-]', ''))) AS ?step2392) . BIND(((?step2392 + ?targetMotifMatchRegionMatchBeginPositionMF_00614382) - 1) AS ?thisPositionOn106) . BIND(?thisPositionOn106 AS ?thisPositionOn107) . BIND(?this AS ?pfs5t393) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfsb103) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfse104) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn106, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a102')) AS ?annotation102) . BIND(?this AS ?pfs101) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch398 faldo:location ?templateMotifSequenceMatchRegionP39748399 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748401 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614394 . ?templateMotifSequenceMatchRegionP39748399 faldo:begin ?templateMotifSequenceMatchBeginP39748400 . ?templateMotifSequenceMatchBeginP39748400 faldo:position ?templateMotifSequenceMatchBeginPositionP39748395 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748401 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch402 faldo:location ?targetMotifMatchRegionMatch403 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614405 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614396 . ?targetMotifMatchRegionMatch403 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614404 . ?targetMotifMatchRegionMatchBeginMF_00614404 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614397 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614405 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614394, 1, (STRLEN(?templateMotifCigarP39748MF_00614394) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614394, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionP39748395) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1406) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614396, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614396) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1406), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614396, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614396) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1406), '}'), '')))), '[^-]', ''))) AS ?step2407) . BIND(((?step2407 + ?targetMotifMatchRegionMatchBeginPositionMF_00614397) - 1) AS ?thisPositionOn113) . BIND(?thisPositionOn113 AS ?thisPositionOn114) . BIND(?this AS ?pfs5t408) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb110) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse111) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn113, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a109')) AS ?annotation109) . BIND(?this AS ?pfs108) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch413 faldo:location ?templateMotifSequenceMatchRegionP39748414 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748416 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614409 . ?templateMotifSequenceMatchRegionP39748414 faldo:begin ?templateMotifSequenceMatchBeginP39748415 . ?templateMotifSequenceMatchBeginP39748415 faldo:position ?templateMotifSequenceMatchBeginPositionP39748410 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748416 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch417 faldo:location ?targetMotifMatchRegionMatch418 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614420 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614411 . ?targetMotifMatchRegionMatch418 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614419 . ?targetMotifMatchRegionMatchBeginMF_00614419 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614412 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614420 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614409, 1, (STRLEN(?templateMotifCigarP39748MF_00614409) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614409, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionP39748410) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1421) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614411, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614411) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614411, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1421), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614411, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614411) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614411, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1421), '}'), '')))), '[^-]', ''))) AS ?step2422) . BIND(((?step2422 + ?targetMotifMatchRegionMatchBeginPositionMF_00614412) - 1) AS ?thisPositionOn120) . BIND(?thisPositionOn120 AS ?thisPositionOn121) . BIND(?this AS ?pfs5t423) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb117) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse118) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a116')) AS ?annotation116) . BIND(?this AS ?pfs115) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch428 faldo:location ?templateMotifSequenceMatchRegionP39748429 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748431 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614424 . ?templateMotifSequenceMatchRegionP39748429 faldo:begin ?templateMotifSequenceMatchBeginP39748430 . ?templateMotifSequenceMatchBeginP39748430 faldo:position ?templateMotifSequenceMatchBeginPositionP39748425 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748431 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch432 faldo:location ?targetMotifMatchRegionMatch433 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614435 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614426 . ?targetMotifMatchRegionMatch433 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614434 . ?targetMotifMatchRegionMatchBeginMF_00614434 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614427 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614435 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614424, 1, (STRLEN(?templateMotifCigarP39748MF_00614424) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614424, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP39748425) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1436) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614426, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614426) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614426, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1436), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614426, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614426) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614426, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1436), '}'), '')))), '[^-]', ''))) AS ?step2437) . BIND(((?step2437 + ?targetMotifMatchRegionMatchBeginPositionMF_00614427) - 1) AS ?thisPositionOn127) . BIND(?thisPositionOn127 AS ?thisPositionOn128) . BIND(?this AS ?pfs5t438) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb124) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse125) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn127, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a123')) AS ?annotation123) . BIND(?this AS ?pfs122) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch443 faldo:location ?templateMotifSequenceMatchRegionP39748444 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748446 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614439 . ?templateMotifSequenceMatchRegionP39748444 faldo:begin ?templateMotifSequenceMatchBeginP39748445 . ?templateMotifSequenceMatchBeginP39748445 faldo:position ?templateMotifSequenceMatchBeginPositionP39748440 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748446 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch447 faldo:location ?targetMotifMatchRegionMatch448 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614450 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614441 . ?targetMotifMatchRegionMatch448 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614449 . ?targetMotifMatchRegionMatchBeginMF_00614449 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614442 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614450 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614439, 1, (STRLEN(?templateMotifCigarP39748MF_00614439) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614439, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionP39748440) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1451) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614441, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614441) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614441, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1451), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614441, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614441) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614441, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1451), '}'), '')))), '[^-]', ''))) AS ?step2452) . BIND(((?step2452 + ?targetMotifMatchRegionMatchBeginPositionMF_00614442) - 1) AS ?thisPositionOn134) . BIND(?thisPositionOn134 AS ?thisPositionOn135) . BIND(?this AS ?pfs5t453) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfsb131) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfse132) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn134, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a130')) AS ?annotation130) . BIND(?this AS ?pfs129) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch458 faldo:location ?templateMotifSequenceMatchRegionP39748459 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748461 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614454 . ?templateMotifSequenceMatchRegionP39748459 faldo:begin ?templateMotifSequenceMatchBeginP39748460 . ?templateMotifSequenceMatchBeginP39748460 faldo:position ?templateMotifSequenceMatchBeginPositionP39748455 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748461 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch462 faldo:location ?targetMotifMatchRegionMatch463 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614465 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614456 . ?targetMotifMatchRegionMatch463 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614464 . ?targetMotifMatchRegionMatchBeginMF_00614464 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614457 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614465 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614454, 1, (STRLEN(?templateMotifCigarP39748MF_00614454) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614454, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionP39748455) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1466) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614456, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614456) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614456, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1466), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614456, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614456) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614456, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1466), '}'), '')))), '[^-]', ''))) AS ?step2467) . BIND(((?step2467 + ?targetMotifMatchRegionMatchBeginPositionMF_00614457) - 1) AS ?thisPositionOn141) . BIND(?thisPositionOn141 AS ?thisPositionOn142) . BIND(?this AS ?pfs5t468) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn141))) AS ?pfsb138) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn142))) AS ?pfse139) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn141, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a137')) AS ?annotation137) . BIND(?this AS ?pfs136) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch473 faldo:location ?templateMotifSequenceMatchRegionP39748474 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748476 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614469 . ?templateMotifSequenceMatchRegionP39748474 faldo:begin ?templateMotifSequenceMatchBeginP39748475 . ?templateMotifSequenceMatchBeginP39748475 faldo:position ?templateMotifSequenceMatchBeginPositionP39748470 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748476 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch477 faldo:location ?targetMotifMatchRegionMatch478 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614480 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614471 . ?targetMotifMatchRegionMatch478 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614479 . ?targetMotifMatchRegionMatchBeginMF_00614479 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614472 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614480 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614469, 1, (STRLEN(?templateMotifCigarP39748MF_00614469) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614469, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionP39748470) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1481) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614471, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614471) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614471, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1481), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614471, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614471) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614471, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1481), '}'), '')))), '[^-]', ''))) AS ?step2482) . BIND(((?step2482 + ?targetMotifMatchRegionMatchBeginPositionMF_00614472) - 1) AS ?thisPositionOn148) . BIND(?thisPositionOn148 AS ?thisPositionOn149) . BIND(?this AS ?pfs5t483) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn148))) AS ?pfsb145) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn149))) AS ?pfse146) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn148, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a144')) AS ?annotation144) . BIND(?this AS ?pfs143) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch488 faldo:location ?templateMotifSequenceMatchRegionP39748489 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748491 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614484 . ?templateMotifSequenceMatchRegionP39748489 faldo:begin ?templateMotifSequenceMatchBeginP39748490 . ?templateMotifSequenceMatchBeginP39748490 faldo:position ?templateMotifSequenceMatchBeginPositionP39748485 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748491 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch492 faldo:location ?targetMotifMatchRegionMatch493 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614495 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614486 . ?targetMotifMatchRegionMatch493 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614494 . ?targetMotifMatchRegionMatchBeginMF_00614494 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614487 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614495 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614484, 1, (STRLEN(?templateMotifCigarP39748MF_00614484) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614484, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionP39748485) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1496) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614486, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614486) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1496), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614486, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614486) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1496), '}'), '')))), '[^-]', ''))) AS ?step2497) . BIND(((?step2497 + ?targetMotifMatchRegionMatchBeginPositionMF_00614487) - 1) AS ?thisPositionOn155) . BIND(?thisPositionOn155 AS ?thisPositionOn156) . BIND(?this AS ?pfs5t498) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn155))) AS ?pfsb152) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn156))) AS ?pfse153) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn155, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a151')) AS ?annotation151) . BIND(?this AS ?pfs150) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch503 faldo:location ?templateMotifSequenceMatchRegionP39748504 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748506 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614499 . ?templateMotifSequenceMatchRegionP39748504 faldo:begin ?templateMotifSequenceMatchBeginP39748505 . ?templateMotifSequenceMatchBeginP39748505 faldo:position ?templateMotifSequenceMatchBeginPositionP39748500 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748506 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch507 faldo:location ?targetMotifMatchRegionMatch508 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614510 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614501 . ?targetMotifMatchRegionMatch508 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614509 . ?targetMotifMatchRegionMatchBeginMF_00614509 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614502 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614510 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614499, 1, (STRLEN(?templateMotifCigarP39748MF_00614499) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614499, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionP39748500) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1511) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614501, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614501) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614501, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1511), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614501, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614501) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614501, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1511), '}'), '')))), '[^-]', ''))) AS ?step2512) . BIND(((?step2512 + ?targetMotifMatchRegionMatchBeginPositionMF_00614502) - 1) AS ?thisPositionOn162) . BIND(?thisPositionOn162 AS ?thisPositionOn163) . BIND(?this AS ?pfs5t513) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn162))) AS ?pfsb159) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn163))) AS ?pfse160) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn162, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a158')) AS ?annotation158) . BIND(?this AS ?pfs157) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch518 faldo:location ?templateMotifSequenceMatchRegionP39748519 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748521 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614514 . ?templateMotifSequenceMatchRegionP39748519 faldo:begin ?templateMotifSequenceMatchBeginP39748520 . ?templateMotifSequenceMatchBeginP39748520 faldo:position ?templateMotifSequenceMatchBeginPositionP39748515 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748521 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch522 faldo:location ?targetMotifMatchRegionMatch523 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614525 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614516 . ?targetMotifMatchRegionMatch523 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614524 . ?targetMotifMatchRegionMatchBeginMF_00614524 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614517 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614525 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614514, 1, (STRLEN(?templateMotifCigarP39748MF_00614514) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614514, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP39748515) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1526) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614516, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614516) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614516, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1526), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614516, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614516) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614516, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1526), '}'), '')))), '[^-]', ''))) AS ?step2527) . BIND(((?step2527 + ?targetMotifMatchRegionMatchBeginPositionMF_00614517) - 1) AS ?thisPositionOn169) . BIND(?thisPositionOn169 AS ?thisPositionOn170) . BIND(?this AS ?pfs5t528) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn169))) AS ?pfsb166) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn170))) AS ?pfse167) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn169, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a165')) AS ?annotation165) . BIND(?this AS ?pfs164) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch533 faldo:location ?templateMotifSequenceMatchRegionP39748534 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39748536 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39748MF_00614529 . ?templateMotifSequenceMatchRegionP39748534 faldo:begin ?templateMotifSequenceMatchBeginP39748535 . ?templateMotifSequenceMatchBeginP39748535 faldo:position ?templateMotifSequenceMatchBeginPositionP39748530 ; faldo:reference isoform:P39748-1 . ?templateMotifSequenceProfileAlignmentOperationP39748536 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . ?targetMotifMatch537 faldo:location ?targetMotifMatchRegionMatch538 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00614540 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39748MF_00614531 . ?targetMotifMatchRegionMatch538 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00614539 . ?targetMotifMatchRegionMatchBeginMF_00614539 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00614532 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00614540 edam:has_input signature:MF_00614 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39748MF_00614529, 1, (STRLEN(?templateMotifCigarP39748MF_00614529) - STRLEN(REPLACE(?templateMotifCigarP39748MF_00614529, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionP39748530) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1541) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39748MF_00614531, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614531) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614531, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1541), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39748MF_00614531, 1, (STRLEN(?targetMotifMatchCigarP39748MF_00614531) - STRLEN(REPLACE(?targetMotifMatchCigarP39748MF_00614531, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1541), '}'), '')))), '[^-]', ''))) AS ?step2542) . BIND(((?step2542 + ?targetMotifMatchRegionMatchBeginPositionMF_00614532) - 1) AS ?thisPositionOn176) . BIND(?thisPositionOn176 AS ?thisPositionOn177) . BIND(?this AS ?pfs5t543) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn176))) AS ?pfsb173) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn177))) AS ?pfse174) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn176, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_03140a172')) AS ?annotation172) . BIND(?this AS ?pfs171) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag544) . } BIND(IF(BOUND(?tagmeth), ?caseWithTag544, ?UNBOUND_VARIABLE) AS ?case9) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag545) . } BIND(IF(BOUND(?tagacet), ?caseWithTag545, ?UNBOUND_VARIABLE) AS ?case10) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(?this AS ?case11) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:6656 . BIND(?this AS ?case12) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33083 . BIND(?this AS ?case13) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:6237 . BIND(?this AS ?case14) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:40674 . })) . BIND(?this AS ?case15) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:4895 . BIND(?this AS ?case16) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(?this AS ?caseWithTag546) . } BIND(IF(BOUND(?tagphospho187), ?caseWithTag546, ?UNBOUND_VARIABLE) AS ?case17) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:40674 . })) . BIND(?this AS ?caseWithTag547) . } BIND(IF(BOUND(?tagphospho187), ?caseWithTag547, ?UNBOUND_VARIABLE) AS ?case18) . OPTIONAL { ?this a up:Protein . VALUES ?supertaxon548 {taxon:4930 taxon:5475} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon548 . BIND(?this AS ?case19) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(?this AS ?caseWithTag549) . } BIND(IF((BOUND(?tagphospho187) || BOUND(?tagmeth192)), ?caseWithTag549, ?UNBOUND_VARIABLE) AS ?case20) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon550 {taxon:4930 taxon:33083 taxon:6237 taxon:4895 taxon:6656 taxon:5475} ?thisOrganism rdfs:subClassOf+ ?supertaxon550 . })) . BIND(?this AS ?case21) . } }