CONSTRUCT { _:882508 up:source unirule:MF_03210 . _:882509 up:source unirule:MF_03210 . _:882510 up:source unirule:MF_03210 . _:882511 up:source unirule:MF_03210 . _:882512 up:source unirule:MF_03210 . _:882513 up:source unirule:MF_03210 . _:882514 up:source unirule:MF_03210 . _:882515 up:source unirule:MF_03210 . _:882516 up:source unirule:MF_03210 . _:882517 up:source unirule:MF_03210 . _:882518 up:source unirule:MF_03210 . _:882519 up:source unirule:MF_03210 . _:882520 up:source unirule:MF_03210 . _:882521 up:source unirule:MF_03210 . _:882522 up:source unirule:MF_03210 . _:882523 up:source unirule:MF_03210 . _:882524 up:source unirule:MF_03210 . _:882525 up:source unirule:MF_03210 . _:882526 up:source unirule:MF_03210 . _:882527 up:source unirule:MF_03210 . _:882528 up:source unirule:MF_03210 . _:882529 up:source unirule:MF_03210 . _:882530 up:source unirule:MF_03210 . _:882531 up:source unirule:MF_03210 . _:882532 up:source unirule:MF_03210 . _:882533 up:source unirule:MF_03210 . _:882534 up:source unirule:MF_03210 . ?this up:annotation ?annotation0 , ?annotation2 , ?annotation3 ; up:classifiedWith GO:0008863 , GO:0042183 , keyword:520 , keyword:560 . ?annotation0 up:activity ?activity1 ; rdf:type up:Catalytic_Activity_Annotation . ?activity1 up:catalyticActivity <http://rdf.rhea-db.org/15985>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.17.1.9>. ?annotation2 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation3 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.' . ?case4 up:alternativeName ?name6 ; up:classifiedWith GO:0005739 , keyword:496 ; up:recommendedName ?name5 . ?name5 up:ecName '1.17.1.9' ; up:fullName 'Formate dehydrogenase, mitochondrial' ; up:shortName 'FDH' ; rdf:type up:Structured_Name . ?name6 up:fullName 'NAD-dependent formate dehydrogenase' ; rdf:type up:Structured_Name . ?case7 up:alternativeName ?name9 ; up:classifiedWith GO:0005737 , keyword:963 ; up:recommendedName ?name8 . ?name8 up:ecName '1.17.1.9' ; up:fullName 'Formate dehydrogenase' ; up:shortName 'FDH' ; rdf:type up:Structured_Name . ?name9 up:fullName 'NAD-dependent formate dehydrogenase' ; rdf:type up:Structured_Name . ?pfs10 up:annotation ?annotation11 . ?annotation11 faldo:begin ?pfsb12 ; faldo:end ?pfse13 ; up:ligand ?ligand14 ; rdf:type up:Binding_Site_Annotation . ?pfsb12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?ligand14 rdfs:subClassOf chebi:57540 . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; up:ligand ?ligand21 ; rdf:type up:Binding_Site_Annotation . ?pfsb19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?ligand21 rdfs:subClassOf chebi:57540 . ?pfs24 up:annotation ?annotation25 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; up:ligand ?ligand28 ; rdf:type up:Binding_Site_Annotation . ?pfsb26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?ligand28 rdfs:subClassOf chebi:57540 . ?pfs31 up:annotation ?annotation32 . ?annotation32 faldo:begin ?pfsb33 ; faldo:end ?pfse34 ; up:ligand ?ligand35 ; rdf:type up:Binding_Site_Annotation . ?pfsb33 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse34 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand35 rdfs:subClassOf ?molecule36 . ?molecule36 rdfs:label 'substrate' . ?pfs39 up:annotation ?annotation40 . ?annotation40 faldo:begin ?pfsb41 ; faldo:end ?pfse42 ; up:ligand ?ligand43 ; rdf:type up:Binding_Site_Annotation . ?pfsb41 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse42 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand43 rdfs:subClassOf ?molecule44 . ?molecule44 rdfs:label 'substrate' . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation . ?pfsb49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf chebi:57540 . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf chebi:57540 . ?pfs61 up:annotation ?annotation62 . ?annotation62 faldo:begin ?pfsb63 ; faldo:end ?pfse64 ; up:ligand ?ligand65 ; rdf:type up:Binding_Site_Annotation . ?pfsb63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?ligand65 rdfs:subClassOf chebi:57540 . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; up:ligand ?ligand72 ; rdf:type up:Binding_Site_Annotation . ?pfsb70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?ligand72 rdfs:subClassOf chebi:57540 . ?pfs75 up:annotation ?annotation76 . ?annotation76 faldo:begin ?pfsb77 ; faldo:end ?pfse78 ; up:ligand ?ligand79 ; rdf:type up:Binding_Site_Annotation . ?pfsb77 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?pfse78 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . ?ligand79 rdfs:subClassOf chebi:57540 . ?pfs82 up:annotation ?annotation83 . ?annotation83 faldo:begin ?pfsb84 ; faldo:end ?pfse85 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for catalytic activity' . ?pfsb84 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . ?pfse85 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?pfs88 up:annotation ?annotation89 . ?annotation89 faldo:begin ?pfsb90 ; faldo:end ?pfse91 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for catalytic activity' . ?pfsb90 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?pfse91 faldo:position ?thisPositionOn93 ; rdf:type faldo:ExactPosition . _:882535 a rdf:Statement ; up:attribution _:882508 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:882536 a rdf:Statement ; up:attribution _:882509 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:882537 a rdf:Statement ; up:attribution _:882510 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:882538 a rdf:Statement ; up:attribution _:882511 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:520 . _:882539 a rdf:Statement ; up:attribution _:882512 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:882540 a rdf:Statement ; up:attribution _:882513 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008863 . _:882541 a rdf:Statement ; up:attribution _:882514 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0042183 . _:882542 a rdf:Statement ; up:attribution _:882515 ; rdf:subject ?case4 ; rdf:predicate up:recommendedName ; rdf:object ?name5 . _:882543 a rdf:Statement ; up:attribution _:882516 ; rdf:subject ?case4 ; rdf:predicate up:alternativeName ; rdf:object ?name6 . _:882544 a rdf:Statement ; up:attribution _:882517 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object keyword:496 . _:882545 a rdf:Statement ; up:attribution _:882518 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005739 . _:882546 a rdf:Statement ; up:attribution _:882519 ; rdf:subject ?case7 ; rdf:predicate up:recommendedName ; rdf:object ?name8 . _:882547 a rdf:Statement ; up:attribution _:882520 ; rdf:subject ?case7 ; rdf:predicate up:alternativeName ; rdf:object ?name9 . _:882548 a rdf:Statement ; up:attribution _:882521 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:882549 a rdf:Statement ; up:attribution _:882522 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:882550 a rdf:Statement ; up:source unirule:MF_03210 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:882551 a rdf:Statement ; up:attribution _:882523 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:882552 a rdf:Statement ; up:source unirule:MF_03210 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:882553 a rdf:Statement ; up:attribution _:882524 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:882554 a rdf:Statement ; up:source unirule:MF_03210 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:882555 a rdf:Statement ; up:attribution _:882525 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:882556 a rdf:Statement ; up:source unirule:MF_03210 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:882557 a rdf:Statement ; up:attribution _:882526 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:882558 a rdf:Statement ; up:source unirule:MF_03210 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:882559 a rdf:Statement ; up:attribution _:882527 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:882560 a rdf:Statement ; up:source unirule:MF_03210 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:882561 a rdf:Statement ; up:attribution _:882528 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:882562 a rdf:Statement ; up:source unirule:MF_03210 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:882563 a rdf:Statement ; up:attribution _:882529 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:882564 a rdf:Statement ; up:source unirule:MF_03210 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:882565 a rdf:Statement ; up:attribution _:882530 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:882566 a rdf:Statement ; up:source unirule:MF_03210 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:882567 a rdf:Statement ; up:attribution _:882531 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:882568 a rdf:Statement ; up:source unirule:MF_03210 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:882569 a rdf:Statement ; up:attribution _:882532 ; rdf:subject ?pfs75 ; rdf:predicate up:annotation ; rdf:object ?annotation76 . _:882570 a rdf:Statement ; up:source unirule:MF_03210 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:882571 a rdf:Statement ; up:attribution _:882533 ; rdf:subject ?pfs82 ; rdf:predicate up:annotation ; rdf:object ?annotation83 . _:882572 a rdf:Statement ; up:source unirule:MF_03210 ; rdf:subject ?pfs88 ; rdf:predicate up:annotation ; rdf:object ?annotation89 . _:882573 a rdf:Statement ; up:attribution _:882534 ; rdf:subject ?pfs88 ; rdf:predicate up:annotation ; rdf:object ?annotation89 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03210 #Rule MF_03210 Created by:? on:2015-11-06 Modified by:Edouard de Castro on:2022-11-19 VALUES ?supertaxon94 {taxon:2 taxon:2759} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_03210 . ?thisOrganism rdfs:subClassOf+ ?supertaxon94 . BIND(URI(CONCAT(STR(?this), '#MF_03210a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_03210a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_03210a3')) AS ?annotation3) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionP33160100 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160102 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33160MF_0321095 . ?templateMotifSequenceMatchRegionP33160100 faldo:begin ?templateMotifSequenceMatchBeginP33160101 . ?templateMotifSequenceMatchBeginP33160101 faldo:position ?templateMotifSequenceMatchBeginPositionP3316096 ; faldo:reference isoform:P33160-1 . ?templateMotifSequenceProfileAlignmentOperationP33160102 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . ?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210106 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33160MF_0321097 . ?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210105 . ?targetMotifMatchRegionMatchBeginMF_03210105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0321098 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03210106 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_0321095, 1, (STRLEN(?templateMotifCigarP33160MF_0321095) - STRLEN(REPLACE(?templateMotifCigarP33160MF_0321095, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionP3316096) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_0321097, 1, (STRLEN(?targetMotifMatchCigarP33160MF_0321097) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_0321097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_0321097, 1, (STRLEN(?targetMotifMatchCigarP33160MF_0321097) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_0321097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) . BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0321098) - 1) AS ?thisPositionOn15) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_0321095, 1, (STRLEN(?templateMotifCigarP33160MF_0321095) - STRLEN(REPLACE(?templateMotifCigarP33160MF_0321095, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionP3316096) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_0321097, 1, (STRLEN(?targetMotifMatchCigarP33160MF_0321097) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_0321097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_0321097, 1, (STRLEN(?targetMotifMatchCigarP33160MF_0321097) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_0321097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) . BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_0321098) - 1) AS ?thisPositionOn16) . BIND(?this AS ?pfs1t111) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)) = 'RI')) . BIND(URI(CONCAT(STR(?this), '#MF_03210a11')) AS ?annotation11) . BIND(?this AS ?pfs10) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionP33160117 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160119 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33160MF_03210112 . ?templateMotifSequenceMatchRegionP33160117 faldo:begin ?templateMotifSequenceMatchBeginP33160118 . ?templateMotifSequenceMatchBeginP33160118 faldo:position ?templateMotifSequenceMatchBeginPositionP33160113 ; faldo:reference isoform:P33160-1 . ?templateMotifSequenceProfileAlignmentOperationP33160119 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . ?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210123 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33160MF_03210114 . ?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210122 . ?targetMotifMatchRegionMatchBeginMF_03210122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210115 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03210123 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210112, 1, (STRLEN(?templateMotifCigarP33160MF_03210112) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210112, CONCAT('^(?:-*[^-]){', STR(((257 - ?templateMotifSequenceMatchBeginPositionP33160113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210114, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210114) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210114, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210114) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) . BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_03210115) - 1) AS ?thisPositionOn22) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210112, 1, (STRLEN(?templateMotifCigarP33160MF_03210112) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210112, CONCAT('^(?:-*[^-]){', STR(((261 - ?templateMotifSequenceMatchBeginPositionP33160113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210114, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210114) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210114, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210114) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) . BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_03210115) - 1) AS ?thisPositionOn23) . BIND(?this AS ?pfs1t128) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) . FILTER (REGEX('PL[HTY][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) . BIND(URI(CONCAT(STR(?this), '#MF_03210a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP33160134 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160136 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33160MF_03210129 . ?templateMotifSequenceMatchRegionP33160134 faldo:begin ?templateMotifSequenceMatchBeginP33160135 . ?templateMotifSequenceMatchBeginP33160135 faldo:position ?templateMotifSequenceMatchBeginPositionP33160130 ; faldo:reference isoform:P33160-1 . ?templateMotifSequenceProfileAlignmentOperationP33160136 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . ?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210140 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33160MF_03210131 . ?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210139 . ?targetMotifMatchRegionMatchBeginMF_03210139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210132 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03210140 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210129, 1, (STRLEN(?templateMotifCigarP33160MF_03210129) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210129, CONCAT('^(?:-*[^-]){', STR(((333 - ?templateMotifSequenceMatchBeginPositionP33160130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210131, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210131) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210131, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210131) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) . BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_03210132) - 1) AS ?thisPositionOn29) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210129, 1, (STRLEN(?templateMotifCigarP33160MF_03210129) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210129, CONCAT('^(?:-*[^-]){', STR(((336 - ?templateMotifSequenceMatchBeginPositionP33160130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210131, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210131) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210131, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210131) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) . BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_03210132) - 1) AS ?thisPositionOn30) . BIND(?this AS ?pfs1t145) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) . FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX]SG', SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)))) . BIND(URI(CONCAT(STR(?this), '#MF_03210a25')) AS ?annotation25) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionP33160151 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160153 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33160MF_03210146 . ?templateMotifSequenceMatchRegionP33160151 faldo:begin ?templateMotifSequenceMatchBeginP33160152 . ?templateMotifSequenceMatchBeginP33160152 faldo:position ?templateMotifSequenceMatchBeginPositionP33160147 ; faldo:reference isoform:P33160-1 . ?templateMotifSequenceProfileAlignmentOperationP33160153 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . ?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210157 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33160MF_03210148 . ?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210156 . ?targetMotifMatchRegionMatchBeginMF_03210156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210149 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03210157 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210146, 1, (STRLEN(?templateMotifCigarP33160MF_03210146) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210146, CONCAT('^(?:-*[^-]){', STR(((123 - ?templateMotifSequenceMatchBeginPositionP33160147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210148, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210148) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210148, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210148) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) . BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_03210149) - 1) AS ?thisPositionOn37) . BIND(?thisPositionOn37 AS ?thisPositionOn38) . BIND(?this AS ?pfs1t160) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse34) . FILTER (REGEX('[IV]', SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_03210a32')) AS ?annotation32) . BIND(?this AS ?pfs31) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionP33160166 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160168 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33160MF_03210161 . ?templateMotifSequenceMatchRegionP33160166 faldo:begin ?templateMotifSequenceMatchBeginP33160167 . ?templateMotifSequenceMatchBeginP33160167 faldo:position ?templateMotifSequenceMatchBeginPositionP33160162 ; faldo:reference isoform:P33160-1 . ?templateMotifSequenceProfileAlignmentOperationP33160168 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . ?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210172 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33160MF_03210163 . ?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210171 . ?targetMotifMatchRegionMatchBeginMF_03210171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210164 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03210172 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210161, 1, (STRLEN(?templateMotifCigarP33160MF_03210161) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210161, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionP33160162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210163, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210163) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210163, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210163) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) . BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_03210164) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs1t175) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb41) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse42) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_03210a40')) AS ?annotation40) . BIND(?this AS ?pfs39) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionP33160181 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160183 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33160MF_03210176 . ?templateMotifSequenceMatchRegionP33160181 faldo:begin ?templateMotifSequenceMatchBeginP33160182 . ?templateMotifSequenceMatchBeginP33160182 faldo:position ?templateMotifSequenceMatchBeginPositionP33160177 ; faldo:reference isoform:P33160-1 . ?templateMotifSequenceProfileAlignmentOperationP33160183 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . ?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210187 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33160MF_03210178 . ?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210186 . ?targetMotifMatchRegionMatchBeginMF_03210186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210179 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03210187 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210176, 1, (STRLEN(?templateMotifCigarP33160MF_03210176) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210176, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionP33160177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210178, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210178) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210178, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210178) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) . BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_03210179) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs1t190) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_03210a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionP33160196 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160198 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33160MF_03210191 . ?templateMotifSequenceMatchRegionP33160196 faldo:begin ?templateMotifSequenceMatchBeginP33160197 . ?templateMotifSequenceMatchBeginP33160197 faldo:position ?templateMotifSequenceMatchBeginPositionP33160192 ; faldo:reference isoform:P33160-1 . ?templateMotifSequenceProfileAlignmentOperationP33160198 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . ?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210202 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33160MF_03210193 . ?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210201 . ?targetMotifMatchRegionMatchBeginMF_03210201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210194 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03210202 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210191, 1, (STRLEN(?templateMotifCigarP33160MF_03210191) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210191, CONCAT('^(?:-*[^-]){', STR(((222 - ?templateMotifSequenceMatchBeginPositionP33160192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210193, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210193) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210193, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210193) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) . BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_03210194) - 1) AS ?thisPositionOn59) . BIND(?thisPositionOn59 AS ?thisPositionOn60) . BIND(?this AS ?pfs1t205) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_03210a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch210 faldo:location ?templateMotifSequenceMatchRegionP33160211 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160213 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33160MF_03210206 . ?templateMotifSequenceMatchRegionP33160211 faldo:begin ?templateMotifSequenceMatchBeginP33160212 . ?templateMotifSequenceMatchBeginP33160212 faldo:position ?templateMotifSequenceMatchBeginPositionP33160207 ; faldo:reference isoform:P33160-1 . ?templateMotifSequenceProfileAlignmentOperationP33160213 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . ?targetMotifMatch214 faldo:location ?targetMotifMatchRegionMatch215 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210217 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33160MF_03210208 . ?targetMotifMatchRegionMatch215 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210216 . ?targetMotifMatchRegionMatchBeginMF_03210216 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210209 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03210217 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210206, 1, (STRLEN(?templateMotifCigarP33160MF_03210206) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210206, CONCAT('^(?:-*[^-]){', STR(((283 - ?templateMotifSequenceMatchBeginPositionP33160207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210208, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210208) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210208, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210208) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) . BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_03210209) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs1t220) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) . FILTER (REGEX('[TN]', SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_03210a62')) AS ?annotation62) . BIND(?this AS ?pfs61) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch225 faldo:location ?templateMotifSequenceMatchRegionP33160226 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160228 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33160MF_03210221 . ?templateMotifSequenceMatchRegionP33160226 faldo:begin ?templateMotifSequenceMatchBeginP33160227 . ?templateMotifSequenceMatchBeginP33160227 faldo:position ?templateMotifSequenceMatchBeginPositionP33160222 ; faldo:reference isoform:P33160-1 . ?templateMotifSequenceProfileAlignmentOperationP33160228 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . ?targetMotifMatch229 faldo:location ?targetMotifMatchRegionMatch230 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210232 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33160MF_03210223 . ?targetMotifMatchRegionMatch230 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210231 . ?targetMotifMatchRegionMatchBeginMF_03210231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210224 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03210232 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210221, 1, (STRLEN(?templateMotifCigarP33160MF_03210221) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210221, CONCAT('^(?:-*[^-]){', STR(((309 - ?templateMotifSequenceMatchBeginPositionP33160222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210223, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210223) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210223, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210223) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) . BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_03210224) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs1t235) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_03210a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch240 faldo:location ?templateMotifSequenceMatchRegionP33160241 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160243 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33160MF_03210236 . ?templateMotifSequenceMatchRegionP33160241 faldo:begin ?templateMotifSequenceMatchBeginP33160242 . ?templateMotifSequenceMatchBeginP33160242 faldo:position ?templateMotifSequenceMatchBeginPositionP33160237 ; faldo:reference isoform:P33160-1 . ?templateMotifSequenceProfileAlignmentOperationP33160243 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . ?targetMotifMatch244 faldo:location ?targetMotifMatchRegionMatch245 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210247 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33160MF_03210238 . ?targetMotifMatchRegionMatch245 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210246 . ?targetMotifMatchRegionMatchBeginMF_03210246 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210239 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03210247 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210236, 1, (STRLEN(?templateMotifCigarP33160MF_03210236) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210236, CONCAT('^(?:-*[^-]){', STR(((381 - ?templateMotifSequenceMatchBeginPositionP33160237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210238, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210238) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210238, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210238) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) . BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_03210239) - 1) AS ?thisPositionOn80) . BIND(?thisPositionOn80 AS ?thisPositionOn81) . BIND(?this AS ?pfs1t250) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_03210a76')) AS ?annotation76) . BIND(?this AS ?pfs75) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch255 faldo:location ?templateMotifSequenceMatchRegionP33160256 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160258 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33160MF_03210251 . ?templateMotifSequenceMatchRegionP33160256 faldo:begin ?templateMotifSequenceMatchBeginP33160257 . ?templateMotifSequenceMatchBeginP33160257 faldo:position ?templateMotifSequenceMatchBeginPositionP33160252 ; faldo:reference isoform:P33160-1 . ?templateMotifSequenceProfileAlignmentOperationP33160258 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . ?targetMotifMatch259 faldo:location ?targetMotifMatchRegionMatch260 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210262 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33160MF_03210253 . ?targetMotifMatchRegionMatch260 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210261 . ?targetMotifMatchRegionMatchBeginMF_03210261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210254 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03210262 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210251, 1, (STRLEN(?templateMotifCigarP33160MF_03210251) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210251, CONCAT('^(?:-*[^-]){', STR(((285 - ?templateMotifSequenceMatchBeginPositionP33160252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1263) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210253, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210253) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210253, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210253) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), '')))), '[^-]', ''))) AS ?step2264) . BIND(((?step2264 + ?targetMotifMatchRegionMatchBeginPositionMF_03210254) - 1) AS ?thisPositionOn86) . BIND(?thisPositionOn86 AS ?thisPositionOn87) . BIND(?this AS ?pfs1t265) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb84) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse85) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_03210a83')) AS ?annotation83) . BIND(?this AS ?pfs82) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch270 faldo:location ?templateMotifSequenceMatchRegionP33160271 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33160273 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP33160MF_03210266 . ?templateMotifSequenceMatchRegionP33160271 faldo:begin ?templateMotifSequenceMatchBeginP33160272 . ?templateMotifSequenceMatchBeginP33160272 faldo:position ?templateMotifSequenceMatchBeginPositionP33160267 ; faldo:reference isoform:P33160-1 . ?templateMotifSequenceProfileAlignmentOperationP33160273 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . ?targetMotifMatch274 faldo:location ?targetMotifMatchRegionMatch275 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03210277 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP33160MF_03210268 . ?targetMotifMatchRegionMatch275 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03210276 . ?targetMotifMatchRegionMatchBeginMF_03210276 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03210269 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03210277 edam:has_input signature:MF_03210 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33160MF_03210266, 1, (STRLEN(?templateMotifCigarP33160MF_03210266) - STRLEN(REPLACE(?templateMotifCigarP33160MF_03210266, CONCAT('^(?:-*[^-]){', STR(((333 - ?templateMotifSequenceMatchBeginPositionP33160267) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1278) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33160MF_03210268, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210268) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33160MF_03210268, 1, (STRLEN(?targetMotifMatchCigarP33160MF_03210268) - STRLEN(REPLACE(?targetMotifMatchCigarP33160MF_03210268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), '')))), '[^-]', ''))) AS ?step2279) . BIND(((?step2279 + ?targetMotifMatchRegionMatchBeginPositionMF_03210269) - 1) AS ?thisPositionOn92) . BIND(?thisPositionOn92 AS ?thisPositionOn93) . BIND(?this AS ?pfs1t280) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb90) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse91) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_03210a89')) AS ?annotation89) . BIND(?this AS ?pfs88) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33090 . BIND(?this AS ?case4) . BIND(URI(CONCAT(STR(?this), '#MF_03210a5')) AS ?name5) . BIND(URI(CONCAT(STR(?this), '#MF_03210a6')) AS ?name6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33090 . })) . BIND(?this AS ?case7) . BIND(URI(CONCAT(STR(?this), '#MF_03210a8')) AS ?name8) . BIND(URI(CONCAT(STR(?this), '#MF_03210a9')) AS ?name9) . } }