CONSTRUCT { _:911702 up:source unirule:MF_04063 . _:911703 up:source unirule:MF_04063 . _:911704 up:source unirule:MF_04063 . _:911705 up:source unirule:MF_04063 . _:911706 up:source unirule:MF_04063 . _:911707 up:source unirule:MF_04063 . _:911708 up:source unirule:MF_04063 . _:911709 up:source unirule:MF_04063 . _:911710 up:source unirule:MF_04063 . _:911711 up:source unirule:MF_04063 . _:911712 up:source unirule:MF_04063 . _:911713 up:source unirule:MF_04063 . _:911714 up:source unirule:MF_04063 . _:911715 up:source unirule:MF_04063 . _:911716 up:source unirule:MF_04063 . _:911717 up:source unirule:MF_04063 . _:911718 up:source unirule:MF_04063 . _:911719 up:source unirule:MF_04063 . _:911720 up:source unirule:MF_04063 . _:911721 up:source unirule:MF_04063 . _:911722 up:source unirule:MF_04063 . _:911723 up:source unirule:MF_04063 . _:911724 up:source unirule:MF_04063 . _:911725 up:source unirule:MF_04063 . _:911726 up:source unirule:MF_04063 . _:911727 up:source unirule:MF_04063 . _:911728 up:source unirule:MF_04063 . _:911729 up:source unirule:MF_04063 . _:911730 up:source unirule:MF_04063 . _:911731 up:source unirule:MF_04063 . _:911732 up:source unirule:MF_04063 . _:911733 up:source unirule:MF_04063 . _:911734 up:source unirule:MF_04063 . _:911735 up:source unirule:MF_04063 . _:911736 up:source unirule:MF_04063 . _:911737 up:source unirule:MF_04063 . _:911738 up:source unirule:MF_04063 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation5 , ?annotation6 , ?annotation9 , ?annotation10 ; up:classifiedWith GO:0003723 , GO:0006351 , GO:0030430 , GO:0039523 , GO:0042025 , GO:0075526 , keyword:1035 , keyword:1048 , keyword:1104 , keyword:1157 , keyword:1190 , keyword:1191 , keyword:1262 , keyword:255 , keyword:378 , keyword:464 , keyword:479 , keyword:540 , keyword:597 , keyword:945 ; up:recommendedName ?name0 . ?name0 up:ecName '3.1.-.-' ; up:fullName 'Polymerase acidic protein' ; rdf:type up:Structured_Name . ?name1 up:fullName 'RNA-directed RNA polymerase subunit P2' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'PA' . ?annotation3 a up:Function_Annotation ; rdfs:comment "Plays an essential role in viral RNA transcription and replication by forming the heterotrimeric polymerase complex together with PB1 and PB2 subunits. The complex transcribes viral mRNAs by using a unique mechanism called cap-snatching. It consists in the hijacking and cleavage of host capped pre-mRNAs. These short capped RNAs are then used as primers for viral mRNAs. The PB2 subunit is responsible for the binding of the 5' cap of cellular pre-mRNAs which are subsequently cleaved after 10-13 nucleotides by the PA subunit that carries the endonuclease activity." . ?annotation4 up:cofactor chebi:29035 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 2 manganese ions per subunit' . ?annotation5 a up:Subunit_Annotation ; rdfs:comment 'Influenza RNA polymerase is composed of three subunits: PB1, PB2 and PA. Interacts (via C-terminus) with PB1 (via N-terminus).' . ?annotation6 a up:Subcellular_Location_Annotation ; rdfs:comment 'PB1 and PA are transported in the host nucleus as a complex' . ?annotation6li7 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation6li8 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation9 a up:PTM_Annotation ; rdfs:comment 'Phosphorylated on serines and threonines by host kinases, including human casein kinase II.' . ?annotation10 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the influenza viruses PA family.' . ?pfs11 up:annotation ?annotation12 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; rdf:type up:Motif_Annotation ; rdfs:comment 'Nuclear localization signal 1 (NLS1)' . ?pfsb13 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; rdf:type up:Motif_Annotation ; rdfs:comment 'Nuclear localization signal 2 (NLS2)' . ?pfsb19 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation . ?pfsb25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf chebi:29035 . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:29035 . ?pfs37 up:annotation ?annotation38 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation . ?pfsb39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf chebi:29035 . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:29035 . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; up:ligand ?ligand55 ; rdf:type up:Binding_Site_Annotation . ?pfsb53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?ligand55 rdfs:subClassOf chebi:29035 . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf chebi:29035 . _:911739 a rdf:Statement ; up:attribution _:911702 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:911740 a rdf:Statement ; up:attribution _:911703 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:911741 a rdf:Statement ; up:attribution _:911704 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:911742 a rdf:Statement ; up:attribution _:911705 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:911743 a rdf:Statement ; up:attribution _:911706 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:911744 a rdf:Statement ; up:attribution _:911707 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:911745 a rdf:Statement ; up:attribution _:911708 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:911746 a rdf:Statement ; up:attribution _:911709 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:911747 a rdf:Statement ; up:attribution _:911710 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:911748 a rdf:Statement ; up:attribution _:911711 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1157 . _:911749 a rdf:Statement ; up:attribution _:911712 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:255 . _:911750 a rdf:Statement ; up:attribution _:911713 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1262 . _:911751 a rdf:Statement ; up:attribution _:911714 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1191 . _:911752 a rdf:Statement ; up:attribution _:911715 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1035 . _:911753 a rdf:Statement ; up:attribution _:911716 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1190 . _:911754 a rdf:Statement ; up:attribution _:911717 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1048 . _:911755 a rdf:Statement ; up:attribution _:911718 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:945 . _:911756 a rdf:Statement ; up:attribution _:911719 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:911757 a rdf:Statement ; up:attribution _:911720 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1104 . _:911758 a rdf:Statement ; up:attribution _:911721 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:464 . _:911759 a rdf:Statement ; up:attribution _:911722 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:911760 a rdf:Statement ; up:attribution _:911723 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:540 . _:911761 a rdf:Statement ; up:attribution _:911724 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:597 . _:911762 a rdf:Statement ; up:attribution _:911725 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0030430 . _:911763 a rdf:Statement ; up:attribution _:911726 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0042025 . _:911764 a rdf:Statement ; up:attribution _:911727 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003723 . _:911765 a rdf:Statement ; up:attribution _:911728 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0075526 . _:911766 a rdf:Statement ; up:attribution _:911729 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0039523 . _:911767 a rdf:Statement ; up:attribution _:911730 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006351 . _:911768 a rdf:Statement ; up:source unirule:MF_04063 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:911769 a rdf:Statement ; up:attribution _:911731 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:911770 a rdf:Statement ; up:source unirule:MF_04063 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:911771 a rdf:Statement ; up:attribution _:911732 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:911772 a rdf:Statement ; up:source unirule:MF_04063 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:911773 a rdf:Statement ; up:attribution _:911733 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:911774 a rdf:Statement ; up:source unirule:MF_04063 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:911775 a rdf:Statement ; up:attribution _:911734 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:911776 a rdf:Statement ; up:source unirule:MF_04063 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:911777 a rdf:Statement ; up:attribution _:911735 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:911778 a rdf:Statement ; up:source unirule:MF_04063 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:911779 a rdf:Statement ; up:attribution _:911736 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:911780 a rdf:Statement ; up:source unirule:MF_04063 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:911781 a rdf:Statement ; up:attribution _:911737 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:911782 a rdf:Statement ; up:source unirule:MF_04063 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:911783 a rdf:Statement ; up:attribution _:911738 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04063 #Rule MF_04063 Created by:pmasson on:2017-03-30 Modified by:crivoire on:2024-03-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04063 . ?thisOrganism rdfs:subClassOf+ taxon:11308 . BIND(URI(CONCAT(STR(?this), '#MF_04063a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_04063a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_04063a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_04063a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_04063a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_04063a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_04063a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_04063a10')) AS ?annotation10) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionP0343370 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0343372 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03433MF_0406365 . ?templateMotifSequenceMatchRegionP0343370 faldo:begin ?templateMotifSequenceMatchBeginP0343371 . ?templateMotifSequenceMatchBeginP0343371 faldo:position ?templateMotifSequenceMatchBeginPositionP0343366 ; faldo:reference isoform:P03433-1 . ?templateMotifSequenceProfileAlignmentOperationP0343372 edam:has_input signature:MF_04063 ; rdf:type edam:operation_0300 . ?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0406376 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03433MF_0406367 . ?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0406375 . ?targetMotifMatchRegionMatchBeginMF_0406375 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0406368 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0406376 edam:has_input signature:MF_04063 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_0406365, 1, (STRLEN(?templateMotifCigarP03433MF_0406365) - STRLEN(REPLACE(?templateMotifCigarP03433MF_0406365, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP0343366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_0406367, 1, (STRLEN(?targetMotifMatchCigarP03433MF_0406367) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_0406367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_0406367, 1, (STRLEN(?targetMotifMatchCigarP03433MF_0406367) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_0406367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) . BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0406368) - 1) AS ?thisPositionOn15) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_0406365, 1, (STRLEN(?templateMotifCigarP03433MF_0406365) - STRLEN(REPLACE(?templateMotifCigarP03433MF_0406365, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionP0343366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_0406367, 1, (STRLEN(?targetMotifMatchCigarP03433MF_0406367) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_0406367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_0406367, 1, (STRLEN(?targetMotifMatchCigarP03433MF_0406367) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_0406367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) . BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0406368) - 1) AS ?thisPositionOn16) . BIND(?this AS ?pfs1t81) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) . FILTER ((BOUND(?thisPositionOn15) && BOUND(?thisPositionOn16))) . BIND(URI(CONCAT(STR(?this), '#MF_04063a12')) AS ?annotation12) . BIND(?this AS ?pfs11) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionP0343387 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0343389 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03433MF_0406382 . ?templateMotifSequenceMatchRegionP0343387 faldo:begin ?templateMotifSequenceMatchBeginP0343388 . ?templateMotifSequenceMatchBeginP0343388 faldo:position ?templateMotifSequenceMatchBeginPositionP0343383 ; faldo:reference isoform:P03433-1 . ?templateMotifSequenceProfileAlignmentOperationP0343389 edam:has_input signature:MF_04063 ; rdf:type edam:operation_0300 . ?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0406393 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03433MF_0406384 . ?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0406392 . ?targetMotifMatchRegionMatchBeginMF_0406392 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0406385 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0406393 edam:has_input signature:MF_04063 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_0406382, 1, (STRLEN(?templateMotifCigarP03433MF_0406382) - STRLEN(REPLACE(?templateMotifCigarP03433MF_0406382, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionP0343383) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_0406384, 1, (STRLEN(?targetMotifMatchCigarP03433MF_0406384) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_0406384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_0406384, 1, (STRLEN(?targetMotifMatchCigarP03433MF_0406384) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_0406384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) . BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0406385) - 1) AS ?thisPositionOn21) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_0406382, 1, (STRLEN(?templateMotifCigarP03433MF_0406382) - STRLEN(REPLACE(?templateMotifCigarP03433MF_0406382, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP0343383) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_0406384, 1, (STRLEN(?targetMotifMatchCigarP03433MF_0406384) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_0406384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_0406384, 1, (STRLEN(?targetMotifMatchCigarP03433MF_0406384) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_0406384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) . BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0406385) - 1) AS ?thisPositionOn22) . BIND(?this AS ?pfs1t98) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) . FILTER ((BOUND(?thisPositionOn21) && BOUND(?thisPositionOn22))) . BIND(URI(CONCAT(STR(?this), '#MF_04063a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionP03433104 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03433106 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03433MF_0406399 . ?templateMotifSequenceMatchRegionP03433104 faldo:begin ?templateMotifSequenceMatchBeginP03433105 . ?templateMotifSequenceMatchBeginP03433105 faldo:position ?templateMotifSequenceMatchBeginPositionP03433100 ; faldo:reference isoform:P03433-1 . ?templateMotifSequenceProfileAlignmentOperationP03433106 edam:has_input signature:MF_04063 ; rdf:type edam:operation_0300 . ?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04063110 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03433MF_04063101 . ?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04063109 . ?targetMotifMatchRegionMatchBeginMF_04063109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04063102 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04063110 edam:has_input signature:MF_04063 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_0406399, 1, (STRLEN(?templateMotifCigarP03433MF_0406399) - STRLEN(REPLACE(?templateMotifCigarP03433MF_0406399, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionP03433100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_04063101, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063101) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_04063101, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063101) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) . BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_04063102) - 1) AS ?thisPositionOn28) . BIND(?thisPositionOn28 AS ?thisPositionOn29) . BIND(?this AS ?pfs1t113) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_04063a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionP03433119 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03433121 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03433MF_04063114 . ?templateMotifSequenceMatchRegionP03433119 faldo:begin ?templateMotifSequenceMatchBeginP03433120 . ?templateMotifSequenceMatchBeginP03433120 faldo:position ?templateMotifSequenceMatchBeginPositionP03433115 ; faldo:reference isoform:P03433-1 . ?templateMotifSequenceProfileAlignmentOperationP03433121 edam:has_input signature:MF_04063 ; rdf:type edam:operation_0300 . ?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04063125 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03433MF_04063116 . ?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04063124 . ?targetMotifMatchRegionMatchBeginMF_04063124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04063117 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04063125 edam:has_input signature:MF_04063 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_04063114, 1, (STRLEN(?templateMotifCigarP03433MF_04063114) - STRLEN(REPLACE(?templateMotifCigarP03433MF_04063114, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP03433115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_04063116, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063116) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_04063116, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063116) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) . BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_04063117) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs1t128) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_04063a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP03433134 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03433136 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03433MF_04063129 . ?templateMotifSequenceMatchRegionP03433134 faldo:begin ?templateMotifSequenceMatchBeginP03433135 . ?templateMotifSequenceMatchBeginP03433135 faldo:position ?templateMotifSequenceMatchBeginPositionP03433130 ; faldo:reference isoform:P03433-1 . ?templateMotifSequenceProfileAlignmentOperationP03433136 edam:has_input signature:MF_04063 ; rdf:type edam:operation_0300 . ?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04063140 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03433MF_04063131 . ?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04063139 . ?targetMotifMatchRegionMatchBeginMF_04063139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04063132 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04063140 edam:has_input signature:MF_04063 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_04063129, 1, (STRLEN(?templateMotifCigarP03433MF_04063129) - STRLEN(REPLACE(?templateMotifCigarP03433MF_04063129, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionP03433130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_04063131, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063131) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_04063131, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063131) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) . BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_04063132) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t143) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_04063a38')) AS ?annotation38) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP03433149 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03433151 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03433MF_04063144 . ?templateMotifSequenceMatchRegionP03433149 faldo:begin ?templateMotifSequenceMatchBeginP03433150 . ?templateMotifSequenceMatchBeginP03433150 faldo:position ?templateMotifSequenceMatchBeginPositionP03433145 ; faldo:reference isoform:P03433-1 . ?templateMotifSequenceProfileAlignmentOperationP03433151 edam:has_input signature:MF_04063 ; rdf:type edam:operation_0300 . ?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04063155 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03433MF_04063146 . ?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04063154 . ?targetMotifMatchRegionMatchBeginMF_04063154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04063147 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04063155 edam:has_input signature:MF_04063 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_04063144, 1, (STRLEN(?templateMotifCigarP03433MF_04063144) - STRLEN(REPLACE(?templateMotifCigarP03433MF_04063144, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionP03433145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_04063146, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063146) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_04063146, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063146) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) . BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_04063147) - 1) AS ?thisPositionOn49) . BIND(?thisPositionOn49 AS ?thisPositionOn50) . BIND(?this AS ?pfs1t158) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_04063a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionP03433164 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03433166 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03433MF_04063159 . ?templateMotifSequenceMatchRegionP03433164 faldo:begin ?templateMotifSequenceMatchBeginP03433165 . ?templateMotifSequenceMatchBeginP03433165 faldo:position ?templateMotifSequenceMatchBeginPositionP03433160 ; faldo:reference isoform:P03433-1 . ?templateMotifSequenceProfileAlignmentOperationP03433166 edam:has_input signature:MF_04063 ; rdf:type edam:operation_0300 . ?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04063170 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03433MF_04063161 . ?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04063169 . ?targetMotifMatchRegionMatchBeginMF_04063169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04063162 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04063170 edam:has_input signature:MF_04063 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_04063159, 1, (STRLEN(?templateMotifCigarP03433MF_04063159) - STRLEN(REPLACE(?templateMotifCigarP03433MF_04063159, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionP03433160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_04063161, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063161) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_04063161, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063161) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) . BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_04063162) - 1) AS ?thisPositionOn56) . BIND(?thisPositionOn56 AS ?thisPositionOn57) . BIND(?this AS ?pfs1t173) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_04063a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionP03433179 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03433181 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP03433MF_04063174 . ?templateMotifSequenceMatchRegionP03433179 faldo:begin ?templateMotifSequenceMatchBeginP03433180 . ?templateMotifSequenceMatchBeginP03433180 faldo:position ?templateMotifSequenceMatchBeginPositionP03433175 ; faldo:reference isoform:P03433-1 . ?templateMotifSequenceProfileAlignmentOperationP03433181 edam:has_input signature:MF_04063 ; rdf:type edam:operation_0300 . ?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04063185 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP03433MF_04063176 . ?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04063184 . ?targetMotifMatchRegionMatchBeginMF_04063184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04063177 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04063185 edam:has_input signature:MF_04063 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03433MF_04063174, 1, (STRLEN(?templateMotifCigarP03433MF_04063174) - STRLEN(REPLACE(?templateMotifCigarP03433MF_04063174, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionP03433175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03433MF_04063176, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063176) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03433MF_04063176, 1, (STRLEN(?targetMotifMatchCigarP03433MF_04063176) - STRLEN(REPLACE(?targetMotifMatchCigarP03433MF_04063176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) . BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_04063177) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs1t188) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) . FILTER (REGEX('[IV]', SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_04063a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } }