CONSTRUCT { _:921361 up:source unirule:MF_04076 . _:921362 up:source unirule:MF_04076 . _:921363 up:source unirule:MF_04076 . _:921364 up:source unirule:MF_04076 . _:921365 up:source unirule:MF_04076 . _:921366 up:source unirule:MF_04076 . _:921367 up:source unirule:MF_04076 . _:921368 up:source unirule:MF_04076 . _:921369 up:source unirule:MF_04076 . _:921370 up:source unirule:MF_04076 . _:921371 up:source unirule:MF_04076 . _:921372 up:source unirule:MF_04076 . _:921373 up:source unirule:MF_04076 . _:921374 up:source unirule:MF_04076 . _:921375 up:source unirule:MF_04076 . _:921376 up:source unirule:MF_04076 . _:921377 up:source unirule:MF_04076 . _:921378 up:source unirule:MF_04076 . _:921379 up:source unirule:MF_04076 . _:921380 up:source unirule:MF_04076 . _:921381 up:source unirule:MF_04076 . _:921382 up:source unirule:MF_04076 . _:921383 up:source unirule:MF_04076 . _:921384 up:source unirule:MF_04076 . _:921385 up:source unirule:MF_04076 . _:921386 up:source unirule:MF_04076 . _:921387 up:source unirule:MF_04076 . _:921388 up:source unirule:MF_04076 . _:921389 up:source unirule:MF_04076 . _:921390 up:source unirule:MF_04076 . _:921391 up:source unirule:MF_04076 . _:921392 up:source unirule:MF_04076 . _:921393 up:source unirule:MF_04076 . _:921394 up:source unirule:MF_04076 . _:921395 up:source unirule:MF_04076 . _:921396 up:source unirule:MF_04076 . _:921397 up:source unirule:MF_04076 . _:921398 up:source unirule:MF_04076 . _:921399 up:source unirule:MF_04076 . ?this up:classifiedWith GO:0005198 , keyword:677 , keyword:945 . ?case0 up:classifiedWith GO:0005576 , GO:0019049 , GO:0042025 , keyword:1015 , keyword:1048 , keyword:732 , keyword:899 , keyword:964 . ?case1 up:classifiedWith GO:0003677 , GO:0003723 , GO:0030430 , GO:0039619 , GO:0046718 , GO:0075521 , GO:0075732 , keyword:1035 , keyword:1144 , keyword:1160 , keyword:1163 , keyword:1176 , keyword:1177 , keyword:167 , keyword:238 , keyword:597 , keyword:694 , keyword:946 . ?pfs2 up:annotation ?annotation3 . ?annotation3 faldo:begin ?pfsb4 ; faldo:end ?pfse5 ; rdf:type up:Region_Annotation ; rdfs:comment 'HBEAG' . ?pfsb4 faldo:position ?thisPositionOn6 ; rdf:type faldo:ExactPosition . ?pfse5 faldo:position ?thisPositionOn7 ; rdf:type faldo:ExactPosition . ?pfs8 up:annotation ?annotation9 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; rdf:type up:Site_Annotation ; rdfs:comment 'Cleavage; by host' . ?pfsb10 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; rdf:type up:Disulfide_Bond_Annotation ; rdfs:comment 'Interchain' . ?pfsb16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; rdf:type up:Disulfide_Bond_Annotation ; rdfs:comment 'Interchain' . ?pfsb22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; rdf:type up:Region_Annotation ; rdfs:comment 'RNA binding' . ?pfsb28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; rdf:type up:Motif_Annotation ; rdfs:comment 'Bipartite nuclear localization signal' . ?pfsb34 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine; by host' . ?pfsb40 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine; by host' . ?pfsb46 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfs50 up:annotation ?annotation51 . ?annotation51 faldo:begin ?pfsb52 ; faldo:end ?pfse53 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Phosphoserine; by host' . ?pfsb52 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfse53 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?sam56 up:classifiedWith keyword:732 . ?signal57 faldo:begin ?signalb58 ; faldo:end ?signale59 . ?signalb58 faldo:position ?signalbp60 . ?signale59 faldo:position ?signalep61 . ?keyword62 up:range ?signal57 . _:921400 a rdf:Statement ; up:attribution _:921361 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:945 . _:921401 a rdf:Statement ; up:attribution _:921362 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:677 . _:921402 a rdf:Statement ; up:attribution _:921363 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005198 . _:921403 a rdf:Statement ; up:attribution _:921364 ; rdf:subject ?case0 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1015 . _:921404 a rdf:Statement ; up:attribution _:921365 ; rdf:subject ?case0 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1048 . _:921405 a rdf:Statement ; up:attribution _:921366 ; rdf:subject ?case0 ; rdf:predicate up:classifiedWith ; rdf:object keyword:964 . _:921406 a rdf:Statement ; up:attribution _:921367 ; rdf:subject ?case0 ; rdf:predicate up:classifiedWith ; rdf:object keyword:732 . _:921407 a rdf:Statement ; up:attribution _:921368 ; rdf:subject ?case0 ; rdf:predicate up:classifiedWith ; rdf:object keyword:899 . _:921408 a rdf:Statement ; up:attribution _:921369 ; rdf:subject ?case0 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005576 . _:921409 a rdf:Statement ; up:attribution _:921370 ; rdf:subject ?case0 ; rdf:predicate up:classifiedWith ; rdf:object GO:0042025 . _:921410 a rdf:Statement ; up:attribution _:921371 ; rdf:subject ?case0 ; rdf:predicate up:classifiedWith ; rdf:object GO:0019049 . _:921411 a rdf:Statement ; up:attribution _:921372 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:167 . _:921412 a rdf:Statement ; up:attribution _:921373 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1176 . _:921413 a rdf:Statement ; up:attribution _:921374 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:238 . _:921414 a rdf:Statement ; up:attribution _:921375 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1035 . _:921415 a rdf:Statement ; up:attribution _:921376 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1177 . _:921416 a rdf:Statement ; up:attribution _:921377 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:597 . _:921417 a rdf:Statement ; up:attribution _:921378 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:921418 a rdf:Statement ; up:attribution _:921379 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1144 . _:921419 a rdf:Statement ; up:attribution _:921380 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1163 . _:921420 a rdf:Statement ; up:attribution _:921381 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:946 . _:921421 a rdf:Statement ; up:attribution _:921382 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1160 . _:921422 a rdf:Statement ; up:attribution _:921383 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0030430 . _:921423 a rdf:Statement ; up:attribution _:921384 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0039619 . _:921424 a rdf:Statement ; up:attribution _:921385 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0003677 . _:921425 a rdf:Statement ; up:attribution _:921386 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0003723 . _:921426 a rdf:Statement ; up:attribution _:921387 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0075521 . _:921427 a rdf:Statement ; up:attribution _:921388 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0046718 . _:921428 a rdf:Statement ; up:attribution _:921389 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0075732 . _:921429 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs2 ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:921430 a rdf:Statement ; up:attribution _:921390 ; rdf:subject ?pfs2 ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:921431 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:921432 a rdf:Statement ; up:attribution _:921391 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:921433 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:921434 a rdf:Statement ; up:attribution _:921392 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:921435 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:921436 a rdf:Statement ; up:attribution _:921393 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:921437 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:921438 a rdf:Statement ; up:attribution _:921394 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:921439 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:921440 a rdf:Statement ; up:attribution _:921395 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:921441 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:921442 a rdf:Statement ; up:attribution _:921396 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:921443 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:921444 a rdf:Statement ; up:attribution _:921397 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:921445 a rdf:Statement ; up:source unirule:MF_04076 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:921446 a rdf:Statement ; up:attribution _:921398 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:921447 a rdf:Statement ; up:attribution _:921399 ; rdf:subject ?sam56 ; rdf:predicate up:classifiedWith ; rdf:object keyword:732 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04076 #Rule MF_04076 Created by:pmasson on:2017-05-15 Modified by:crivoire on:2024-03-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04076 . ?thisOrganism rdfs:subClassOf+ taxon:10405 . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch67 faldo:location ?templateMotifSequenceMatchRegionP0C76768 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C76770 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0C767MF_0407663 . ?templateMotifSequenceMatchRegionP0C76768 faldo:begin ?templateMotifSequenceMatchBeginP0C76769 . ?templateMotifSequenceMatchBeginP0C76769 faldo:position ?templateMotifSequenceMatchBeginPositionP0C76764 ; faldo:reference isoform:P0C767-1 . ?templateMotifSequenceProfileAlignmentOperationP0C76770 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch71 faldo:location ?targetMotifMatchRegionMatch72 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0407674 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0C767MF_0407665 . ?targetMotifMatchRegionMatch72 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0407673 . ?targetMotifMatchRegionMatchBeginMF_0407673 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0407666 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0407674 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagHBEAG) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C767MF_0407663, 1, (STRLEN(?templateMotifCigarP0C767MF_0407663) - STRLEN(REPLACE(?templateMotifCigarP0C767MF_0407663, CONCAT('^(?:-*[^-]){', STR(((25 - ?templateMotifSequenceMatchBeginPositionP0C76764) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C767MF_0407665, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407665) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407665, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C767MF_0407665, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407665) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407665, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) . BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0407666) - 1) AS ?thisPositionOn6) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C767MF_0407663, 1, (STRLEN(?templateMotifCigarP0C767MF_0407663) - STRLEN(REPLACE(?templateMotifCigarP0C767MF_0407663, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP0C76764) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C767MF_0407665, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407665) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407665, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C767MF_0407665, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407665) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407665, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) . BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0407666) - 1) AS ?thisPositionOn7) . BIND(?this AS ?pfs1t79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn6))) AS ?pfsb4) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn7))) AS ?pfse5) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn6, (?thisPositionOn7 - ?thisPositionOn6)) = 'GWL')) . BIND(URI(CONCAT(STR(?this), '#MF_04076a3')) AS ?annotation3) . BIND(?this AS ?pfs2) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionP0C76785 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C76787 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0C767MF_0407680 . ?templateMotifSequenceMatchRegionP0C76785 faldo:begin ?templateMotifSequenceMatchBeginP0C76786 . ?templateMotifSequenceMatchBeginP0C76786 faldo:position ?templateMotifSequenceMatchBeginPositionP0C76781 ; faldo:reference isoform:P0C767-1 . ?templateMotifSequenceProfileAlignmentOperationP0C76787 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0407691 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0C767MF_0407682 . ?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0407690 . ?targetMotifMatchRegionMatchBeginMF_0407690 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0407683 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0407691 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C767MF_0407680, 1, (STRLEN(?templateMotifCigarP0C767MF_0407680) - STRLEN(REPLACE(?templateMotifCigarP0C767MF_0407680, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionP0C76781) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C767MF_0407682, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407682) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407682, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C767MF_0407682, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407682) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407682, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) . BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0407683) - 1) AS ?thisPositionOn12) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C767MF_0407680, 1, (STRLEN(?templateMotifCigarP0C767MF_0407680) - STRLEN(REPLACE(?templateMotifCigarP0C767MF_0407680, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionP0C76781) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C767MF_0407682, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407682) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407682, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C767MF_0407682, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407682) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407682, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) . BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0407683) - 1) AS ?thisPositionOn13) . BIND(?this AS ?pfs2t96) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)) = 'RS')) . BIND(URI(CONCAT(STR(?this), '#MF_04076a9')) AS ?annotation9) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch101 faldo:location ?templateMotifSequenceMatchRegionP0C767102 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C767104 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0C767MF_0407697 . ?templateMotifSequenceMatchRegionP0C767102 faldo:begin ?templateMotifSequenceMatchBeginP0C767103 . ?templateMotifSequenceMatchBeginP0C767103 faldo:position ?templateMotifSequenceMatchBeginPositionP0C76798 ; faldo:reference isoform:P0C767-1 . ?templateMotifSequenceProfileAlignmentOperationP0C767104 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch105 faldo:location ?targetMotifMatchRegionMatch106 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04076108 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0C767MF_0407699 . ?targetMotifMatchRegionMatch106 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04076107 . ?targetMotifMatchRegionMatchBeginMF_04076107 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04076100 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04076108 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C767MF_0407697, 1, (STRLEN(?templateMotifCigarP0C767MF_0407697) - STRLEN(REPLACE(?templateMotifCigarP0C767MF_0407697, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionP0C76798) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C767MF_0407699, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407699) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407699, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C767MF_0407699, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_0407699) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_0407699, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) . BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_04076100) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs2t111) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_04076a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionP0C767117 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0C767119 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0C767MF_04076112 . ?templateMotifSequenceMatchRegionP0C767117 faldo:begin ?templateMotifSequenceMatchBeginP0C767118 . ?templateMotifSequenceMatchBeginP0C767118 faldo:position ?templateMotifSequenceMatchBeginPositionP0C767113 ; faldo:reference isoform:P0C767-1 . ?templateMotifSequenceProfileAlignmentOperationP0C767119 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04076123 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0C767MF_04076114 . ?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04076122 . ?targetMotifMatchRegionMatchBeginMF_04076122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04076115 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04076123 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0C767MF_04076112, 1, (STRLEN(?templateMotifCigarP0C767MF_04076112) - STRLEN(REPLACE(?templateMotifCigarP0C767MF_04076112, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionP0C767113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0C767MF_04076114, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_04076114) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_04076114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0C767MF_04076114, 1, (STRLEN(?targetMotifMatchCigarP0C767MF_04076114) - STRLEN(REPLACE(?targetMotifMatchCigarP0C767MF_04076114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) . BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_04076115) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs2t126) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_04076a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionQ76R61132 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R61134 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ76R61MF_04076127 . ?templateMotifSequenceMatchRegionQ76R61132 faldo:begin ?templateMotifSequenceMatchBeginQ76R61133 . ?templateMotifSequenceMatchBeginQ76R61133 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R61128 ; faldo:reference isoform:Q76R61-1 . ?templateMotifSequenceProfileAlignmentOperationQ76R61134 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04076138 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ76R61MF_04076129 . ?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04076137 . ?targetMotifMatchRegionMatchBeginMF_04076137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04076130 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04076138 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R61MF_04076127, 1, (STRLEN(?templateMotifCigarQ76R61MF_04076127) - STRLEN(REPLACE(?templateMotifCigarQ76R61MF_04076127, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionQ76R61128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076129, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076129) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076129, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076129) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) . BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_04076130) - 1) AS ?thisPositionOn30) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R61MF_04076127, 1, (STRLEN(?templateMotifCigarQ76R61MF_04076127) - STRLEN(REPLACE(?templateMotifCigarQ76R61MF_04076127, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionQ76R61128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076129, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076129) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076129, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076129) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) . BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_04076130) - 1) AS ?thisPositionOn31) . BIND(?this AS ?pfs3t143) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) . FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) . BIND(URI(CONCAT(STR(?this), '#MF_04076a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionQ76R61149 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R61151 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ76R61MF_04076144 . ?templateMotifSequenceMatchRegionQ76R61149 faldo:begin ?templateMotifSequenceMatchBeginQ76R61150 . ?templateMotifSequenceMatchBeginQ76R61150 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R61145 ; faldo:reference isoform:Q76R61-1 . ?templateMotifSequenceProfileAlignmentOperationQ76R61151 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04076155 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ76R61MF_04076146 . ?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04076154 . ?targetMotifMatchRegionMatchBeginMF_04076154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04076147 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04076155 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R61MF_04076144, 1, (STRLEN(?templateMotifCigarQ76R61MF_04076144) - STRLEN(REPLACE(?templateMotifCigarQ76R61MF_04076144, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionQ76R61145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076146, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076146) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076146, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076146) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) . BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_04076147) - 1) AS ?thisPositionOn36) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R61MF_04076144, 1, (STRLEN(?templateMotifCigarQ76R61MF_04076144) - STRLEN(REPLACE(?templateMotifCigarQ76R61MF_04076144, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionQ76R61145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076146, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076146) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076146, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076146) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) . BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_04076147) - 1) AS ?thisPositionOn37) . BIND(?this AS ?pfs3t160) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) . FILTER ((BOUND(?thisPositionOn36) && BOUND(?thisPositionOn37))) . BIND(URI(CONCAT(STR(?this), '#MF_04076a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionQ76R61166 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R61168 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ76R61MF_04076161 . ?templateMotifSequenceMatchRegionQ76R61166 faldo:begin ?templateMotifSequenceMatchBeginQ76R61167 . ?templateMotifSequenceMatchBeginQ76R61167 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R61162 ; faldo:reference isoform:Q76R61-1 . ?templateMotifSequenceProfileAlignmentOperationQ76R61168 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04076172 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ76R61MF_04076163 . ?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04076171 . ?targetMotifMatchRegionMatchBeginMF_04076171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04076164 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04076172 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R61MF_04076161, 1, (STRLEN(?templateMotifCigarQ76R61MF_04076161) - STRLEN(REPLACE(?templateMotifCigarQ76R61MF_04076161, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionQ76R61162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076163, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076163) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076163, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076163) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) . BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_04076164) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs3t175) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_04076a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionQ76R61181 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R61183 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ76R61MF_04076176 . ?templateMotifSequenceMatchRegionQ76R61181 faldo:begin ?templateMotifSequenceMatchBeginQ76R61182 . ?templateMotifSequenceMatchBeginQ76R61182 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R61177 ; faldo:reference isoform:Q76R61-1 . ?templateMotifSequenceProfileAlignmentOperationQ76R61183 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04076187 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ76R61MF_04076178 . ?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04076186 . ?targetMotifMatchRegionMatchBeginMF_04076186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04076179 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04076187 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R61MF_04076176, 1, (STRLEN(?templateMotifCigarQ76R61MF_04076176) - STRLEN(REPLACE(?templateMotifCigarQ76R61MF_04076176, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionQ76R61177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076178, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076178) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076178, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076178) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) . BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_04076179) - 1) AS ?thisPositionOn48) . BIND(?thisPositionOn48 AS ?thisPositionOn49) . BIND(?this AS ?pfs3t190) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_04076a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionQ76R61196 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76R61198 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ76R61MF_04076191 . ?templateMotifSequenceMatchRegionQ76R61196 faldo:begin ?templateMotifSequenceMatchBeginQ76R61197 . ?templateMotifSequenceMatchBeginQ76R61197 faldo:position ?templateMotifSequenceMatchBeginPositionQ76R61192 ; faldo:reference isoform:Q76R61-1 . ?templateMotifSequenceProfileAlignmentOperationQ76R61198 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . ?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04076202 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ76R61MF_04076193 . ?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04076201 . ?targetMotifMatchRegionMatchBeginMF_04076201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04076194 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04076202 edam:has_input signature:MF_04076 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76R61MF_04076191, 1, (STRLEN(?templateMotifCigarQ76R61MF_04076191) - STRLEN(REPLACE(?templateMotifCigarQ76R61MF_04076191, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionQ76R61192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076193, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076193) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76R61MF_04076193, 1, (STRLEN(?targetMotifMatchCigarQ76R61MF_04076193) - STRLEN(REPLACE(?targetMotifMatchCigarQ76R61MF_04076193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) . BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_04076194) - 1) AS ?thisPositionOn54) . BIND(?thisPositionOn54 AS ?thisPositionOn55) . BIND(?this AS ?pfs3t205) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse53) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_04076a51')) AS ?annotation51) . BIND(?this AS ?pfs50) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag206) . } BIND(IF(BOUND(?tagHBEAG), ?caseWithTag206, ?UNBOUND_VARIABLE) AS ?case0) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag207) . } BIND(IF(BOUND(?tagHBEAG), ?caseWithTag207, ?UNBOUND_VARIABLE) AS ?case1) . OPTIONAL { ?this up:annotation ?samsignal208 ; up:sequence ?thisSequence . ?samsignal208 up:range ?samsignalr209 ; rdf:type up:Signal_Peptide_Annotation . ?samsignalr209 faldo:begin ?samsignalb210 ; faldo:end ?samsignale211 . ?samsignalb210 faldo:position ?samsignalbp212 ; faldo:reference ?thisSequence . ?samsignale211 faldo:position ?samsignalep213 ; faldo:reference ?thisSequence . BIND(?this AS ?sam56) . } BIND(URI(CONCAT(STR(?this), '#MF_04076a62')) AS ?keyword62) . }