CONSTRUCT { _:939940 up:source unirule:MF_04098 . _:939941 up:source unirule:MF_04098 . _:939942 up:source unirule:MF_04098 . _:939943 up:source unirule:MF_04098 . _:939944 up:fullName 'Spike protein S1' ; rdf:type up:Structured_Name . _:939945 up:source unirule:MF_04098 . _:939946 up:fullName 'Spike protein S2' ; rdf:type up:Structured_Name . _:939947 up:source unirule:MF_04098 . _:939948 up:fullName "Spike protein S2'" ; rdf:type up:Structured_Name . _:939949 up:source unirule:MF_04098 . _:939950 up:source unirule:MF_04098 . _:939951 up:source unirule:MF_04098 . _:939952 up:source unirule:MF_04098 . _:939953 up:source unirule:MF_04098 . _:939954 up:source unirule:MF_04098 . _:939955 up:source unirule:MF_04098 . _:939956 up:source unirule:MF_04098 . _:939957 up:source unirule:MF_04098 . _:939958 up:source unirule:MF_04098 . _:939959 up:source unirule:MF_04098 . _:939960 up:source unirule:MF_04098 . _:939961 up:source unirule:MF_04098 . _:939962 up:source unirule:MF_04098 . _:939963 up:source unirule:MF_04098 . _:939964 up:source unirule:MF_04098 . _:939965 up:source unirule:MF_04098 . _:939966 up:source unirule:MF_04098 . _:939967 up:source unirule:MF_04098 . _:939968 up:source unirule:MF_04098 . _:939969 up:source unirule:MF_04098 . _:939970 up:source unirule:MF_04098 . _:939971 up:source unirule:MF_04098 . _:939972 up:source unirule:MF_04098 . _:939973 up:source unirule:MF_04098 . _:939974 up:source unirule:MF_04098 . _:939975 up:source unirule:MF_04098 . _:939976 up:source unirule:MF_04098 . _:939977 up:source unirule:MF_04098 . _:939978 up:source unirule:MF_04098 . _:939979 up:source unirule:MF_04098 . _:939980 up:source unirule:MF_04098 . _:939981 up:source unirule:MF_04098 . _:939982 up:source unirule:MF_04098 . _:939983 up:source unirule:MF_04098 . _:939984 up:source unirule:MF_04098 . _:939985 up:source unirule:MF_04098 . _:939986 up:source unirule:MF_04098 . _:939987 up:source unirule:MF_04098 . _:939988 up:source unirule:MF_04098 . _:939989 up:source unirule:MF_04098 . _:939990 up:source unirule:MF_04098 . _:939991 up:source unirule:MF_04098 . _:939992 up:source unirule:MF_04098 . _:939993 up:source unirule:MF_04098 . _:939994 up:source unirule:MF_04098 . _:939995 up:source unirule:MF_04098 . _:939996 up:source unirule:MF_04098 . _:939997 up:source unirule:MF_04098 . ?this up:alternativeName ?name1 , ?name2 ; up:annotation ?annotation7 , ?annotation8 , ?annotation9 , ?annotation10 , ?annotation11 , ?annotation14 , ?annotation17 , ?annotation18 ; up:classifiedWith GO:0016020 , GO:0019031 , GO:0019064 , GO:0039654 , GO:0044173 , GO:0046813 , GO:0055036 , GO:0075509 , keyword:1043 , keyword:1133 , keyword:1160 , keyword:1161 , keyword:1162 , keyword:1164 , keyword:1168 , keyword:1170 , keyword:165 , keyword:175 , keyword:261 , keyword:325 , keyword:472 , keyword:732 , keyword:812 , keyword:843 , keyword:945 , keyword:946 ; up:component ?namedpart3 , ?namedpart4 , ?namedpart5 ; up:precursor "true"^^xsd:boolean ; up:recommendedName ?name0 . ?name0 up:fullName 'Spike glycoprotein' ; up:shortName 'S glycoprotein' ; rdf:type up:Structured_Name . ?name1 up:fullName 'E2' ; rdf:type up:Structured_Name . ?name2 up:fullName 'Peplomer protein' ; rdf:type up:Structured_Name . ?namedpart3 up:recommendedName _:939944 . ?namedpart4 up:recommendedName _:939946 . ?namedpart5 up:recommendedName _:939948 . ?gene6 skos:prefLabel 'S' . ?annotation7 a up:Function_Annotation ; rdfs:comment 'Spike protein S1: attaches the virion to the host cell membrane by interacting with sialic acids, initiating the infection.' . ?annotation8 a up:Function_Annotation ; rdfs:comment 'Spike protein S2: mediates fusion of the virion and cellular membranes by acting as a class I viral fusion protein. Under the current model, the protein has at least 3 conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes.' . ?annotation9 a up:Function_Annotation ; rdfs:comment "Spike protein S2': Acts as a viral fusion peptide after S2 cleavage occurring upon virus endocytosis." . ?annotation10 a up:Subunit_Annotation ; rdfs:comment 'Homotrimer; each monomer consists of a S1 and a S2 subunit. The resulting peplomers protrude from the virus surface as spikes.' . ?annotation11 a up:Subcellular_Location_Annotation ; rdfs:comment 'Accumulates in the endoplasmic reticulum-Golgi intermediate compartment, where it participates in virus particle assembly. Some S oligomers may be transported to the plasma membrane, where they may mediate cell-cell fusion' . ?annotation11li12 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation11li13 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation14 a up:Subcellular_Location_Annotation ; rdfs:comment 'Accumulates in the endoplasmic reticulum-Golgi intermediate compartment, where it participates in virus particle assembly. Some S oligomers may be transported to the plasma membrane, where they may mediate cell-cell fusion. S1 is not anchored to the viral envelope, but associates with the extravirion surface through its binding to S2' . ?annotation14li15 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation14li16 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation17 a up:PTM_Annotation ; rdfs:comment 'Specific enzymatic cleavages in vivo yield mature proteins. The precursor is processed into S1 and S2 by host cell furin or furin-like protease to yield the mature S1 and S2 proteins. The cleavage site between S1 and S2 requires the optimal sequence [KR]-X-[KR]-R. Additionally, a second cleavage leads to the release of a fusion peptide after viral attachment to host cell receptor.' . ?annotation18 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the gammacoronaviruses spike protein family.' . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; rdf:type up:Motif_Annotation ; rdfs:comment 'Di-lysine motif' . ?pfsb22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; rdf:type up:Signal_Peptide_Annotation . ?pfsb28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; rdf:type up:Chain_Annotation ; rdfs:comment 'Spike protein S1' . ?pfsb34 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; rdf:type up:Chain_Annotation ; rdfs:comment 'Spike protein S2' . ?pfsb40 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; rdf:type up:Chain_Annotation ; rdfs:comment "Spike protein S2'" . ?pfsb46 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfs50 up:annotation ?annotation51 . ?annotation51 faldo:begin ?pfsb52 ; faldo:end ?pfse53 ; rdf:type up:Topological_Domain_Annotation ; rdfs:comment 'Extracellular' . ?pfsb52 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfse53 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?pfs56 up:annotation ?annotation57 . ?annotation57 faldo:begin ?pfsb58 ; faldo:end ?pfse59 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb58 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse59 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; rdf:type up:Topological_Domain_Annotation ; rdfs:comment 'Cytoplasmic' . ?pfsb64 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; rdf:type up:Coiled_Coil_Annotation . ?pfsb70 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfs74 up:annotation ?annotation75 . ?annotation75 faldo:begin ?pfsb76 ; faldo:end ?pfse77 ; rdf:type up:Coiled_Coil_Annotation . ?pfsb76 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?pfse77 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?pfs80 up:annotation ?annotation81 . ?annotation81 faldo:begin ?pfsb82 ; faldo:end ?pfse83 ; rdf:type up:Site_Annotation ; rdfs:comment 'Cleavage; by host furin' . ?pfsb82 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?pfse83 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?pfs86 up:annotation ?annotation87 . ?annotation87 faldo:begin ?pfsb88 ; faldo:end ?pfse89 ; rdf:type up:Site_Annotation ; rdfs:comment 'Cleavage; by host furin' . ?pfsb88 faldo:position ?thisPositionOn90 ; rdf:type faldo:ExactPosition . ?pfse89 faldo:position ?thisPositionOn91 ; rdf:type faldo:ExactPosition . ?sam92 up:classifiedWith keyword:175 . ?coiledCoil93 faldo:begin ?coiledCoilb94 ; faldo:end ?coiledCoile95 . ?coiledCoilb94 faldo:position ?coiledCoilbp96 . ?coiledCoile95 faldo:position ?coiledCoilep97 . ?keyword98 up:range ?coiledCoil93 . _:939998 a rdf:Statement ; up:attribution _:939940 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:939999 a rdf:Statement ; up:attribution _:939941 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:940000 a rdf:Statement ; up:attribution _:939942 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:940001 a rdf:Statement ; up:attribution _:939943 ; rdf:subject ?this ; rdf:predicate up:precursor ; rdf:object "true"^^xsd:boolean . _:940002 a rdf:Statement ; up:attribution _:939945 ; rdf:subject ?this ; rdf:predicate up:component ; rdf:object ?namedpart3 . _:940003 a rdf:Statement ; up:attribution _:939947 ; rdf:subject ?this ; rdf:predicate up:component ; rdf:object ?namedpart4 . _:940004 a rdf:Statement ; up:attribution _:939949 ; rdf:subject ?this ; rdf:predicate up:component ; rdf:object ?namedpart5 . _:940005 a rdf:Statement ; up:attribution _:939950 ; rdf:subject ?gene6 ; rdf:predicate up:encodedBy ; rdf:object ?gene6 . _:940006 a rdf:Statement ; up:attribution _:939951 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:940007 a rdf:Statement ; up:attribution _:939952 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:940008 a rdf:Statement ; up:attribution _:939953 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:940009 a rdf:Statement ; up:attribution _:939954 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:940010 a rdf:Statement ; up:attribution _:939955 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:940011 a rdf:Statement ; up:attribution _:939956 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:940012 a rdf:Statement ; up:attribution _:939957 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:940013 a rdf:Statement ; up:attribution _:939958 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:940014 a rdf:Statement ; up:attribution _:939959 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:165 . _:940015 a rdf:Statement ; up:attribution _:939960 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:175 . _:940016 a rdf:Statement ; up:attribution _:939961 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1170 . _:940017 a rdf:Statement ; up:attribution _:939962 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1168 . _:940018 a rdf:Statement ; up:attribution _:939963 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:325 . _:940019 a rdf:Statement ; up:attribution _:939964 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1043 . _:940020 a rdf:Statement ; up:attribution _:939965 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:945 . _:940021 a rdf:Statement ; up:attribution _:939966 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:940022 a rdf:Statement ; up:attribution _:939967 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:732 . _:940023 a rdf:Statement ; up:attribution _:939968 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:940024 a rdf:Statement ; up:attribution _:939969 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . _:940025 a rdf:Statement ; up:attribution _:939970 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1161 . _:940026 a rdf:Statement ; up:attribution _:939971 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:261 . _:940027 a rdf:Statement ; up:attribution _:939972 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1162 . _:940028 a rdf:Statement ; up:attribution _:939973 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:946 . _:940029 a rdf:Statement ; up:attribution _:939974 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:843 . _:940030 a rdf:Statement ; up:attribution _:939975 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1164 . _:940031 a rdf:Statement ; up:attribution _:939976 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1160 . _:940032 a rdf:Statement ; up:attribution _:939977 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0044173 . _:940033 a rdf:Statement ; up:attribution _:939978 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016020 . _:940034 a rdf:Statement ; up:attribution _:939979 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019031 . _:940035 a rdf:Statement ; up:attribution _:939980 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0055036 . _:940036 a rdf:Statement ; up:attribution _:939981 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0075509 . _:940037 a rdf:Statement ; up:attribution _:939982 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0039654 . _:940038 a rdf:Statement ; up:attribution _:939983 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019064 . _:940039 a rdf:Statement ; up:attribution _:939984 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0046813 . _:940040 a rdf:Statement ; up:source unirule:MF_04098 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:940041 a rdf:Statement ; up:attribution _:939985 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:940042 a rdf:Statement ; up:source unirule:MF_04098 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:940043 a rdf:Statement ; up:attribution _:939986 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:940044 a rdf:Statement ; up:source unirule:MF_04098 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:940045 a rdf:Statement ; up:attribution _:939987 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:940046 a rdf:Statement ; up:source unirule:MF_04098 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:940047 a rdf:Statement ; up:attribution _:939988 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:940048 a rdf:Statement ; up:source unirule:MF_04098 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:940049 a rdf:Statement ; up:attribution _:939989 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:940050 a rdf:Statement ; up:source unirule:MF_04098 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:940051 a rdf:Statement ; up:attribution _:939990 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:940052 a rdf:Statement ; up:source unirule:MF_04098 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:940053 a rdf:Statement ; up:attribution _:939991 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:940054 a rdf:Statement ; up:source unirule:MF_04098 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:940055 a rdf:Statement ; up:attribution _:939992 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:940056 a rdf:Statement ; up:source unirule:MF_04098 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:940057 a rdf:Statement ; up:attribution _:939993 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:940058 a rdf:Statement ; up:source unirule:MF_04098 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:940059 a rdf:Statement ; up:attribution _:939994 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:940060 a rdf:Statement ; up:source unirule:MF_04098 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:940061 a rdf:Statement ; up:attribution _:939995 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:940062 a rdf:Statement ; up:source unirule:MF_04098 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:940063 a rdf:Statement ; up:attribution _:939996 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:940064 a rdf:Statement ; up:attribution _:939997 ; rdf:subject ?sam92 ; rdf:predicate up:classifiedWith ; rdf:object keyword:175 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04098 #Rule MF_04098 Created by:pmasson on:2018-03-26 Modified by:ecastro on:2022-09-29 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04098 . ?thisOrganism rdfs:subClassOf+ taxon:694013 . BIND(URI(CONCAT(STR(?this), '#MF_04098a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_04098a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_04098a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_04098a3')) AS ?namedpart3) . BIND(URI(CONCAT(STR(?this), '#MF_04098a4')) AS ?namedpart4) . BIND(URI(CONCAT(STR(?this), '#MF_04098a5')) AS ?namedpart5) . BIND(URI(CONCAT(STR(?this), '#MF_04098a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_04098a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_04098a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_04098a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_04098a11')) AS ?annotation11) . BIND(URI(CONCAT(STR(?this), '#MF_04098a14')) AS ?annotation14) . BIND(URI(CONCAT(STR(?this), '#MF_04098a17')) AS ?annotation17) . BIND(URI(CONCAT(STR(?this), '#MF_04098a18')) AS ?annotation18) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionP11223104 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223106 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11223MF_0409899 . ?templateMotifSequenceMatchRegionP11223104 faldo:begin ?templateMotifSequenceMatchBeginP11223105 . ?templateMotifSequenceMatchBeginP11223105 faldo:position ?templateMotifSequenceMatchBeginPositionP11223100 ; faldo:reference isoform:P11223-1 . ?templateMotifSequenceProfileAlignmentOperationP11223106 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . ?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098110 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11223MF_04098101 . ?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098109 . ?targetMotifMatchRegionMatchBeginMF_04098109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098102 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04098110 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagMotif) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_0409899, 1, (STRLEN(?templateMotifCigarP11223MF_0409899) - STRLEN(REPLACE(?templateMotifCigarP11223MF_0409899, CONCAT('^(?:-*[^-]){', STR(((1159 - ?templateMotifSequenceMatchBeginPositionP11223100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098101, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098101) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098101, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098101) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) . BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_04098102) - 1) AS ?thisPositionOn24) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_0409899, 1, (STRLEN(?templateMotifCigarP11223MF_0409899) - STRLEN(REPLACE(?templateMotifCigarP11223MF_0409899, CONCAT('^(?:-*[^-]){', STR(((1162 - ?templateMotifSequenceMatchBeginPositionP11223100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098101, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098101) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098101, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098101) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) . BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_04098102) - 1) AS ?thisPositionOn25) . BIND(?this AS ?pfs1t115) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) . FILTER (REGEX('KK[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)))) . BIND(URI(CONCAT(STR(?this), '#MF_04098a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionP11223121 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223123 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11223MF_04098116 . ?templateMotifSequenceMatchRegionP11223121 faldo:begin ?templateMotifSequenceMatchBeginP11223122 . ?templateMotifSequenceMatchBeginP11223122 faldo:position ?templateMotifSequenceMatchBeginPositionP11223117 ; faldo:reference isoform:P11223-1 . ?templateMotifSequenceProfileAlignmentOperationP11223123 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . ?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098127 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11223MF_04098118 . ?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098126 . ?targetMotifMatchRegionMatchBeginMF_04098126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098119 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04098127 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . BIND(1 AS ?thisPositionOn30) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098116, 1, (STRLEN(?templateMotifCigarP11223MF_04098116) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098116, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionP11223117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098118, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098118) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098118, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098118) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) . BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_04098119) - 1) AS ?thisPositionOn31) . BIND(?this AS ?pfs2t130) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) . FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) . BIND(URI(CONCAT(STR(?this), '#MF_04098a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionP11223136 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223138 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11223MF_04098131 . ?templateMotifSequenceMatchRegionP11223136 faldo:begin ?templateMotifSequenceMatchBeginP11223137 . ?templateMotifSequenceMatchBeginP11223137 faldo:position ?templateMotifSequenceMatchBeginPositionP11223132 ; faldo:reference isoform:P11223-1 . ?templateMotifSequenceProfileAlignmentOperationP11223138 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . ?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098142 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11223MF_04098133 . ?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098141 . ?targetMotifMatchRegionMatchBeginMF_04098141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098134 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04098142 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098131, 1, (STRLEN(?templateMotifCigarP11223MF_04098131) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098131, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP11223132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098133, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098133) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098133, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098133) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) . BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_04098134) - 1) AS ?thisPositionOn36) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098131, 1, (STRLEN(?templateMotifCigarP11223MF_04098131) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098131, CONCAT('^(?:-*[^-]){', STR(((537 - ?templateMotifSequenceMatchBeginPositionP11223132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098133, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098133) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098133, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098133) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) . BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_04098134) - 1) AS ?thisPositionOn37) . BIND(?this AS ?pfs2t147) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) . FILTER ((BOUND(?thisPositionOn36) && BOUND(?thisPositionOn37))) . BIND(URI(CONCAT(STR(?this), '#MF_04098a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionP11223153 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223155 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11223MF_04098148 . ?templateMotifSequenceMatchRegionP11223153 faldo:begin ?templateMotifSequenceMatchBeginP11223154 . ?templateMotifSequenceMatchBeginP11223154 faldo:position ?templateMotifSequenceMatchBeginPositionP11223149 ; faldo:reference isoform:P11223-1 . ?templateMotifSequenceProfileAlignmentOperationP11223155 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . ?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098159 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11223MF_04098150 . ?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098158 . ?targetMotifMatchRegionMatchBeginMF_04098158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098151 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04098159 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098148, 1, (STRLEN(?templateMotifCigarP11223MF_04098148) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098148, CONCAT('^(?:-*[^-]){', STR(((538 - ?templateMotifSequenceMatchBeginPositionP11223149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098150, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098150) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098150, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098150) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) . BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_04098151) - 1) AS ?thisPositionOn42) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn43) . BIND(?this AS ?pfs2t162) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) . FILTER ((BOUND(?thisPositionOn42) && BOUND(?thisPositionOn43))) . BIND(URI(CONCAT(STR(?this), '#MF_04098a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionP11223168 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223170 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11223MF_04098163 . ?templateMotifSequenceMatchRegionP11223168 faldo:begin ?templateMotifSequenceMatchBeginP11223169 . ?templateMotifSequenceMatchBeginP11223169 faldo:position ?templateMotifSequenceMatchBeginPositionP11223164 ; faldo:reference isoform:P11223-1 . ?templateMotifSequenceProfileAlignmentOperationP11223170 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . ?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098174 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11223MF_04098165 . ?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098173 . ?targetMotifMatchRegionMatchBeginMF_04098173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098166 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04098174 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098163, 1, (STRLEN(?templateMotifCigarP11223MF_04098163) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098163, CONCAT('^(?:-*[^-]){', STR(((691 - ?templateMotifSequenceMatchBeginPositionP11223164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098165, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098165) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098165, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098165) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) . BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_04098166) - 1) AS ?thisPositionOn48) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn49) . BIND(?this AS ?pfs2t177) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) . FILTER ((BOUND(?thisPositionOn48) && BOUND(?thisPositionOn49))) . BIND(URI(CONCAT(STR(?this), '#MF_04098a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP11223183 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223185 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11223MF_04098178 . ?templateMotifSequenceMatchRegionP11223183 faldo:begin ?templateMotifSequenceMatchBeginP11223184 . ?templateMotifSequenceMatchBeginP11223184 faldo:position ?templateMotifSequenceMatchBeginPositionP11223179 ; faldo:reference isoform:P11223-1 . ?templateMotifSequenceProfileAlignmentOperationP11223185 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . ?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098189 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11223MF_04098180 . ?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098188 . ?targetMotifMatchRegionMatchBeginMF_04098188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098181 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04098189 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098178, 1, (STRLEN(?templateMotifCigarP11223MF_04098178) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098178, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP11223179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098180, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098180) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098180, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098180) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) . BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_04098181) - 1) AS ?thisPositionOn54) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098178, 1, (STRLEN(?templateMotifCigarP11223MF_04098178) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098178, CONCAT('^(?:-*[^-]){', STR(((1095 - ?templateMotifSequenceMatchBeginPositionP11223179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098180, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098180) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098180, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098180) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) . BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_04098181) - 1) AS ?thisPositionOn55) . BIND(?this AS ?pfs2t194) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse53) . FILTER ((BOUND(?thisPositionOn54) && BOUND(?thisPositionOn55))) . BIND(URI(CONCAT(STR(?this), '#MF_04098a51')) AS ?annotation51) . BIND(?this AS ?pfs50) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP11223200 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223202 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11223MF_04098195 . ?templateMotifSequenceMatchRegionP11223200 faldo:begin ?templateMotifSequenceMatchBeginP11223201 . ?templateMotifSequenceMatchBeginP11223201 faldo:position ?templateMotifSequenceMatchBeginPositionP11223196 ; faldo:reference isoform:P11223-1 . ?templateMotifSequenceProfileAlignmentOperationP11223202 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . ?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098206 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11223MF_04098197 . ?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098205 . ?targetMotifMatchRegionMatchBeginMF_04098205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098198 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04098206 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098195, 1, (STRLEN(?templateMotifCigarP11223MF_04098195) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098195, CONCAT('^(?:-*[^-]){', STR(((1096 - ?templateMotifSequenceMatchBeginPositionP11223196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098197, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098197) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098197, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098197) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) . BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_04098198) - 1) AS ?thisPositionOn60) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098195, 1, (STRLEN(?templateMotifCigarP11223MF_04098195) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098195, CONCAT('^(?:-*[^-]){', STR(((1116 - ?templateMotifSequenceMatchBeginPositionP11223196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098197, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098197) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098197, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098197) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) . BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_04098198) - 1) AS ?thisPositionOn61) . BIND(?this AS ?pfs2t211) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb58) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse59) . FILTER ((BOUND(?thisPositionOn60) && BOUND(?thisPositionOn61))) . BIND(URI(CONCAT(STR(?this), '#MF_04098a57')) AS ?annotation57) . BIND(?this AS ?pfs56) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch216 faldo:location ?templateMotifSequenceMatchRegionP11223217 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223219 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11223MF_04098212 . ?templateMotifSequenceMatchRegionP11223217 faldo:begin ?templateMotifSequenceMatchBeginP11223218 . ?templateMotifSequenceMatchBeginP11223218 faldo:position ?templateMotifSequenceMatchBeginPositionP11223213 ; faldo:reference isoform:P11223-1 . ?templateMotifSequenceProfileAlignmentOperationP11223219 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . ?targetMotifMatch220 faldo:location ?targetMotifMatchRegionMatch221 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098223 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11223MF_04098214 . ?targetMotifMatchRegionMatch221 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098222 . ?targetMotifMatchRegionMatchBeginMF_04098222 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098215 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04098223 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098212, 1, (STRLEN(?templateMotifCigarP11223MF_04098212) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098212, CONCAT('^(?:-*[^-]){', STR(((1117 - ?templateMotifSequenceMatchBeginPositionP11223213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098214, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098214) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098214, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098214) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) . BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_04098215) - 1) AS ?thisPositionOn66) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn67) . BIND(?this AS ?pfs2t226) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) . FILTER ((BOUND(?thisPositionOn66) && BOUND(?thisPositionOn67))) . BIND(URI(CONCAT(STR(?this), '#MF_04098a63')) AS ?annotation63) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch231 faldo:location ?templateMotifSequenceMatchRegionP11223232 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223234 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11223MF_04098227 . ?templateMotifSequenceMatchRegionP11223232 faldo:begin ?templateMotifSequenceMatchBeginP11223233 . ?templateMotifSequenceMatchBeginP11223233 faldo:position ?templateMotifSequenceMatchBeginPositionP11223228 ; faldo:reference isoform:P11223-1 . ?templateMotifSequenceProfileAlignmentOperationP11223234 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . ?targetMotifMatch235 faldo:location ?targetMotifMatchRegionMatch236 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098238 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11223MF_04098229 . ?targetMotifMatchRegionMatch236 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098237 . ?targetMotifMatchRegionMatchBeginMF_04098237 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098230 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04098238 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098227, 1, (STRLEN(?templateMotifCigarP11223MF_04098227) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098227, CONCAT('^(?:-*[^-]){', STR(((822 - ?templateMotifSequenceMatchBeginPositionP11223228) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1239) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098229, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098229) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098229, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098229) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), '')))), '[^-]', ''))) AS ?step2240) . BIND(((?step2240 + ?targetMotifMatchRegionMatchBeginPositionMF_04098230) - 1) AS ?thisPositionOn72) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098227, 1, (STRLEN(?templateMotifCigarP11223MF_04098227) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098227, CONCAT('^(?:-*[^-]){', STR(((866 - ?templateMotifSequenceMatchBeginPositionP11223228) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098229, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098229) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098229, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098229) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) . BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_04098230) - 1) AS ?thisPositionOn73) . BIND(?this AS ?pfs2t243) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse71) . FILTER ((BOUND(?thisPositionOn72) && BOUND(?thisPositionOn73))) . BIND(URI(CONCAT(STR(?this), '#MF_04098a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionP11223249 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223251 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11223MF_04098244 . ?templateMotifSequenceMatchRegionP11223249 faldo:begin ?templateMotifSequenceMatchBeginP11223250 . ?templateMotifSequenceMatchBeginP11223250 faldo:position ?templateMotifSequenceMatchBeginPositionP11223245 ; faldo:reference isoform:P11223-1 . ?templateMotifSequenceProfileAlignmentOperationP11223251 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . ?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098255 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11223MF_04098246 . ?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098254 . ?targetMotifMatchRegionMatchBeginMF_04098254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098247 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04098255 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098244, 1, (STRLEN(?templateMotifCigarP11223MF_04098244) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098244, CONCAT('^(?:-*[^-]){', STR(((1055 - ?templateMotifSequenceMatchBeginPositionP11223245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098246, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098246) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098246, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098246) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) . BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_04098247) - 1) AS ?thisPositionOn78) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098244, 1, (STRLEN(?templateMotifCigarP11223MF_04098244) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098244, CONCAT('^(?:-*[^-]){', STR(((1083 - ?templateMotifSequenceMatchBeginPositionP11223245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1258) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098246, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098246) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098246, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098246) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), '')))), '[^-]', ''))) AS ?step2259) . BIND(((?step2259 + ?targetMotifMatchRegionMatchBeginPositionMF_04098247) - 1) AS ?thisPositionOn79) . BIND(?this AS ?pfs2t260) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse77) . FILTER ((BOUND(?thisPositionOn78) && BOUND(?thisPositionOn79))) . BIND(URI(CONCAT(STR(?this), '#MF_04098a75')) AS ?annotation75) . BIND(?this AS ?pfs74) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch265 faldo:location ?templateMotifSequenceMatchRegionP11223266 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223268 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11223MF_04098261 . ?templateMotifSequenceMatchRegionP11223266 faldo:begin ?templateMotifSequenceMatchBeginP11223267 . ?templateMotifSequenceMatchBeginP11223267 faldo:position ?templateMotifSequenceMatchBeginPositionP11223262 ; faldo:reference isoform:P11223-1 . ?templateMotifSequenceProfileAlignmentOperationP11223268 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . ?targetMotifMatch269 faldo:location ?targetMotifMatchRegionMatch270 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098272 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11223MF_04098263 . ?targetMotifMatchRegionMatch270 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098271 . ?targetMotifMatchRegionMatchBeginMF_04098271 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098264 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04098272 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098261, 1, (STRLEN(?templateMotifCigarP11223MF_04098261) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098261, CONCAT('^(?:-*[^-]){', STR(((537 - ?templateMotifSequenceMatchBeginPositionP11223262) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1273) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098263, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098263) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098263, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098263) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), '')))), '[^-]', ''))) AS ?step2274) . BIND(((?step2274 + ?targetMotifMatchRegionMatchBeginPositionMF_04098264) - 1) AS ?thisPositionOn84) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098261, 1, (STRLEN(?templateMotifCigarP11223MF_04098261) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098261, CONCAT('^(?:-*[^-]){', STR(((538 - ?templateMotifSequenceMatchBeginPositionP11223262) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1275) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098263, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098263) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098263, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098263) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), '')))), '[^-]', ''))) AS ?step2276) . BIND(((?step2276 + ?targetMotifMatchRegionMatchBeginPositionMF_04098264) - 1) AS ?thisPositionOn85) . BIND(?this AS ?pfs2t277) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb82) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse83) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, (?thisPositionOn85 - ?thisPositionOn84)) = 'RS')) . BIND(URI(CONCAT(STR(?this), '#MF_04098a81')) AS ?annotation81) . BIND(?this AS ?pfs80) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch282 faldo:location ?templateMotifSequenceMatchRegionP11223283 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223285 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11223MF_04098278 . ?templateMotifSequenceMatchRegionP11223283 faldo:begin ?templateMotifSequenceMatchBeginP11223284 . ?templateMotifSequenceMatchBeginP11223284 faldo:position ?templateMotifSequenceMatchBeginPositionP11223279 ; faldo:reference isoform:P11223-1 . ?templateMotifSequenceProfileAlignmentOperationP11223285 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . ?targetMotifMatch286 faldo:location ?targetMotifMatchRegionMatch287 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098289 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11223MF_04098280 . ?targetMotifMatchRegionMatch287 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098288 . ?targetMotifMatchRegionMatchBeginMF_04098288 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098281 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04098289 edam:has_input signature:MF_04098 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098278, 1, (STRLEN(?templateMotifCigarP11223MF_04098278) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098278, CONCAT('^(?:-*[^-]){', STR(((690 - ?templateMotifSequenceMatchBeginPositionP11223279) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1290) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098280, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098280) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098280, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098280) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), '')))), '[^-]', ''))) AS ?step2291) . BIND(((?step2291 + ?targetMotifMatchRegionMatchBeginPositionMF_04098281) - 1) AS ?thisPositionOn90) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098278, 1, (STRLEN(?templateMotifCigarP11223MF_04098278) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098278, CONCAT('^(?:-*[^-]){', STR(((691 - ?templateMotifSequenceMatchBeginPositionP11223279) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098280, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098280) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098280, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098280) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) . BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_04098281) - 1) AS ?thisPositionOn91) . BIND(?this AS ?pfs2t294) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb88) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse89) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn90, (?thisPositionOn91 - ?thisPositionOn90)) = 'RS')) . BIND(URI(CONCAT(STR(?this), '#MF_04098a87')) AS ?annotation87) . BIND(?this AS ?pfs86) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag295) . } BIND(IF(BOUND(?tagMotif), ?caseWithTag295, ?UNBOUND_VARIABLE) AS ?case19) . OPTIONAL { ?this up:annotation ?samcc296 ; up:sequence ?thisSequence . ?samcc296 up:range ?samccr297 ; rdf:type up:Coiled_Coil_Annotation . ?samccr297 faldo:begin ?samccb298 ; faldo:end ?samcce299 . ?samccb298 faldo:position ?samccbp300 ; faldo:reference ?thisSequence . ?samcce299 faldo:position ?samccep301 ; faldo:reference ?thisSequence . BIND(?this AS ?sam92) . } BIND(URI(CONCAT(STR(?this), '#MF_04098a98')) AS ?keyword98) . }