CONSTRUCT { _:973681 up:source unirule:MF_04201 . _:973682 up:source unirule:MF_04201 . _:973683 up:source unirule:MF_04201 . _:973684 up:source unirule:MF_04201 . _:973685 up:source unirule:MF_04201 . _:973686 up:source unirule:MF_04201 . _:973687 up:source unirule:MF_04201 . _:973688 up:source unirule:MF_04201 . _:973689 up:source unirule:MF_04201 . _:973690 up:source unirule:MF_04201 . _:973691 up:source unirule:MF_04201 . _:973692 up:source unirule:MF_04201 . _:973693 up:source unirule:MF_04201 . _:973694 up:source unirule:MF_04201 . _:973695 up:source unirule:MF_04201 . _:973696 up:source unirule:MF_04201 . _:973697 up:source unirule:MF_04201 . _:973698 up:source unirule:MF_04201 . _:973699 up:source unirule:MF_04201 . _:973700 up:source unirule:MF_04201 . _:973701 up:source unirule:MF_04201 . _:973702 up:source unirule:MF_04201 . _:973703 up:source unirule:MF_04201 . _:973704 up:source unirule:MF_04201 . _:973705 up:source unirule:MF_04201 . _:973706 up:source unirule:MF_04201 . _:973707 up:source unirule:MF_04201 . _:973708 up:source unirule:MF_04201 . _:973709 up:source unirule:MF_04201 . _:973710 up:source unirule:MF_04201 . _:973711 up:source unirule:MF_04201 . _:973712 up:source unirule:MF_04201 . ?this up:alternativeName ?name1 , ?name2 , ?name3 ; up:annotation ?annotation5 , ?annotation6 , ?annotation7 , ?annotation10 ; up:classifiedWith GO:0016020 , GO:0019031 , GO:0030430 , GO:0039660 , GO:0044178 , GO:0055036 , keyword:1040 , keyword:1043 , keyword:1133 , keyword:261 , keyword:325 , keyword:468 , keyword:472 , keyword:812 , keyword:946 ; up:recommendedName ?name0 . ?name0 up:fullName 'Membrane protein' ; up:shortName 'M protein' ; rdf:type up:Structured_Name . ?name1 up:fullName 'E1 glycoprotein' ; rdf:type up:Structured_Name . ?name2 up:fullName 'Matrix glycoprotein' ; rdf:type up:Structured_Name . ?name3 up:fullName 'Membrane glycoprotein' ; rdf:type up:Structured_Name . ?gene4 skos:prefLabel 'M' . ?annotation5 a up:Function_Annotation ; rdfs:comment 'Component of the viral envelope that plays a central role in virus morphogenesis and assembly via its interactions with other viral proteins.' . ?annotation6 a up:Subunit_Annotation ; rdfs:comment 'Homomultimer. Interacts with envelope E protein in the budding compartment of the host cell, which is located between endoplasmic reticulum and the Golgi complex. Forms a complex with HE and S proteins. Interacts with nucleocapsid N protein. This interaction probably participates in RNA packaging into the virus.' . ?annotation7 a up:Subcellular_Location_Annotation ; rdfs:comment 'Largely embedded in the lipid bilayer' . ?annotation7li8 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation7li9 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation10 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the alphacoronaviruses M protein family.' . ?pfs11 up:annotation ?annotation12 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; rdf:type up:Topological_Domain_Annotation ; rdfs:comment 'Virion surface' . ?pfsb13 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb19 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; rdf:type up:Topological_Domain_Annotation ; rdfs:comment 'Intravirion' . ?pfsb25 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfs29 up:annotation ?annotation30 . ?annotation30 faldo:begin ?pfsb31 ; faldo:end ?pfse32 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb31 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse32 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; rdf:type up:Topological_Domain_Annotation ; rdfs:comment 'Virion surface' . ?pfsb37 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfs41 up:annotation ?annotation42 . ?annotation42 faldo:begin ?pfsb43 ; faldo:end ?pfse44 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb43 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse44 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; rdf:type up:Topological_Domain_Annotation ; rdfs:comment 'Intravirion' . ?pfsb49 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfs53 up:annotation ?annotation54 . ?annotation54 faldo:begin ?pfsb55 ; faldo:end ?pfse56 ; rdf:type up:Region_Annotation ; rdfs:comment 'Interaction with N protein' . ?pfsb55 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfse56 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . _:973713 a rdf:Statement ; up:attribution _:973681 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:973714 a rdf:Statement ; up:attribution _:973682 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:973715 a rdf:Statement ; up:attribution _:973683 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:973716 a rdf:Statement ; up:attribution _:973684 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name3 . _:973717 a rdf:Statement ; up:attribution _:973685 ; rdf:subject ?gene4 ; rdf:predicate up:encodedBy ; rdf:object ?gene4 . _:973718 a rdf:Statement ; up:attribution _:973686 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:973719 a rdf:Statement ; up:attribution _:973687 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:973720 a rdf:Statement ; up:attribution _:973688 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:973721 a rdf:Statement ; up:attribution _:973689 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:973722 a rdf:Statement ; up:attribution _:973690 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:325 . _:973723 a rdf:Statement ; up:attribution _:973691 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1040 . _:973724 a rdf:Statement ; up:attribution _:973692 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1043 . _:973725 a rdf:Statement ; up:attribution _:973693 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:973726 a rdf:Statement ; up:attribution _:973694 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:973727 a rdf:Statement ; up:attribution _:973695 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . _:973728 a rdf:Statement ; up:attribution _:973696 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:261 . _:973729 a rdf:Statement ; up:attribution _:973697 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:468 . _:973730 a rdf:Statement ; up:attribution _:973698 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:946 . _:973731 a rdf:Statement ; up:attribution _:973699 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0030430 . _:973732 a rdf:Statement ; up:attribution _:973700 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0044178 . _:973733 a rdf:Statement ; up:attribution _:973701 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016020 . _:973734 a rdf:Statement ; up:attribution _:973702 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019031 . _:973735 a rdf:Statement ; up:attribution _:973703 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0055036 . _:973736 a rdf:Statement ; up:attribution _:973704 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0039660 . _:973737 a rdf:Statement ; up:source unirule:MF_04201 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:973738 a rdf:Statement ; up:attribution _:973705 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:973739 a rdf:Statement ; up:source unirule:MF_04201 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:973740 a rdf:Statement ; up:attribution _:973706 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:973741 a rdf:Statement ; up:source unirule:MF_04201 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:973742 a rdf:Statement ; up:attribution _:973707 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:973743 a rdf:Statement ; up:source unirule:MF_04201 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:973744 a rdf:Statement ; up:attribution _:973708 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:973745 a rdf:Statement ; up:source unirule:MF_04201 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:973746 a rdf:Statement ; up:attribution _:973709 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:973747 a rdf:Statement ; up:source unirule:MF_04201 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:973748 a rdf:Statement ; up:attribution _:973710 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:973749 a rdf:Statement ; up:source unirule:MF_04201 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:973750 a rdf:Statement ; up:attribution _:973711 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:973751 a rdf:Statement ; up:source unirule:MF_04201 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:973752 a rdf:Statement ; up:attribution _:973712 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_04201 #Rule MF_04201 Created by:pmasson on:2018-03-23 Modified by:ecastro on:2022-09-29 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_04201 . ?thisOrganism rdfs:subClassOf+ taxon:693996 . BIND(URI(CONCAT(STR(?this), '#MF_04201a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_04201a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_04201a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_04201a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_04201a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_04201a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_04201a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_04201a10')) AS ?annotation10) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionP0413564 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0413566 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP04135MF_0420159 . ?templateMotifSequenceMatchRegionP0413564 faldo:begin ?templateMotifSequenceMatchBeginP0413565 . ?templateMotifSequenceMatchBeginP0413565 faldo:position ?templateMotifSequenceMatchBeginPositionP0413560 ; faldo:reference isoform:P04135-1 . ?templateMotifSequenceProfileAlignmentOperationP0413566 edam:has_input signature:MF_04201 ; rdf:type edam:operation_0300 . ?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0420170 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP04135MF_0420161 . ?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0420169 . ?targetMotifMatchRegionMatchBeginMF_0420169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0420162 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0420170 edam:has_input signature:MF_04201 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04135MF_0420159, 1, (STRLEN(?templateMotifCigarP04135MF_0420159) - STRLEN(REPLACE(?templateMotifCigarP04135MF_0420159, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionP0413560) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04135MF_0420161, 1, (STRLEN(?targetMotifMatchCigarP04135MF_0420161) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_0420161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04135MF_0420161, 1, (STRLEN(?targetMotifMatchCigarP04135MF_0420161) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_0420161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) . BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0420162) - 1) AS ?thisPositionOn15) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04135MF_0420159, 1, (STRLEN(?templateMotifCigarP04135MF_0420159) - STRLEN(REPLACE(?templateMotifCigarP04135MF_0420159, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionP0413560) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04135MF_0420161, 1, (STRLEN(?targetMotifMatchCigarP04135MF_0420161) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_0420161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04135MF_0420161, 1, (STRLEN(?targetMotifMatchCigarP04135MF_0420161) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_0420161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) . BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0420162) - 1) AS ?thisPositionOn16) . BIND(?this AS ?pfs1t75) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) . FILTER ((BOUND(?thisPositionOn15) && BOUND(?thisPositionOn16))) . BIND(URI(CONCAT(STR(?this), '#MF_04201a12')) AS ?annotation12) . BIND(?this AS ?pfs11) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionP0413581 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0413583 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP04135MF_0420176 . ?templateMotifSequenceMatchRegionP0413581 faldo:begin ?templateMotifSequenceMatchBeginP0413582 . ?templateMotifSequenceMatchBeginP0413582 faldo:position ?templateMotifSequenceMatchBeginPositionP0413577 ; faldo:reference isoform:P04135-1 . ?templateMotifSequenceProfileAlignmentOperationP0413583 edam:has_input signature:MF_04201 ; rdf:type edam:operation_0300 . ?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0420187 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP04135MF_0420178 . ?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0420186 . ?targetMotifMatchRegionMatchBeginMF_0420186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0420179 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0420187 edam:has_input signature:MF_04201 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04135MF_0420176, 1, (STRLEN(?templateMotifCigarP04135MF_0420176) - STRLEN(REPLACE(?templateMotifCigarP04135MF_0420176, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP0413577) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04135MF_0420178, 1, (STRLEN(?targetMotifMatchCigarP04135MF_0420178) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_0420178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04135MF_0420178, 1, (STRLEN(?targetMotifMatchCigarP04135MF_0420178) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_0420178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) . BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0420179) - 1) AS ?thisPositionOn21) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04135MF_0420176, 1, (STRLEN(?templateMotifCigarP04135MF_0420176) - STRLEN(REPLACE(?templateMotifCigarP04135MF_0420176, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP0413577) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04135MF_0420178, 1, (STRLEN(?targetMotifMatchCigarP04135MF_0420178) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_0420178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04135MF_0420178, 1, (STRLEN(?targetMotifMatchCigarP04135MF_0420178) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_0420178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) . BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0420179) - 1) AS ?thisPositionOn22) . BIND(?this AS ?pfs1t92) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) . FILTER ((BOUND(?thisPositionOn21) && BOUND(?thisPositionOn22))) . BIND(URI(CONCAT(STR(?this), '#MF_04201a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionP0413598 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04135100 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP04135MF_0420193 . ?templateMotifSequenceMatchRegionP0413598 faldo:begin ?templateMotifSequenceMatchBeginP0413599 . ?templateMotifSequenceMatchBeginP0413599 faldo:position ?templateMotifSequenceMatchBeginPositionP0413594 ; faldo:reference isoform:P04135-1 . ?templateMotifSequenceProfileAlignmentOperationP04135100 edam:has_input signature:MF_04201 ; rdf:type edam:operation_0300 . ?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04201104 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP04135MF_0420195 . ?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04201103 . ?targetMotifMatchRegionMatchBeginMF_04201103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0420196 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04201104 edam:has_input signature:MF_04201 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04135MF_0420193, 1, (STRLEN(?templateMotifCigarP04135MF_0420193) - STRLEN(REPLACE(?templateMotifCigarP04135MF_0420193, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionP0413594) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04135MF_0420195, 1, (STRLEN(?targetMotifMatchCigarP04135MF_0420195) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_0420195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04135MF_0420195, 1, (STRLEN(?targetMotifMatchCigarP04135MF_0420195) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_0420195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) . BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0420196) - 1) AS ?thisPositionOn27) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04135MF_0420193, 1, (STRLEN(?templateMotifCigarP04135MF_0420193) - STRLEN(REPLACE(?templateMotifCigarP04135MF_0420193, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionP0413594) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04135MF_0420195, 1, (STRLEN(?targetMotifMatchCigarP04135MF_0420195) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_0420195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04135MF_0420195, 1, (STRLEN(?targetMotifMatchCigarP04135MF_0420195) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_0420195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) . BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0420196) - 1) AS ?thisPositionOn28) . BIND(?this AS ?pfs1t109) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) . FILTER ((BOUND(?thisPositionOn27) && BOUND(?thisPositionOn28))) . BIND(URI(CONCAT(STR(?this), '#MF_04201a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionP04135115 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04135117 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP04135MF_04201110 . ?templateMotifSequenceMatchRegionP04135115 faldo:begin ?templateMotifSequenceMatchBeginP04135116 . ?templateMotifSequenceMatchBeginP04135116 faldo:position ?templateMotifSequenceMatchBeginPositionP04135111 ; faldo:reference isoform:P04135-1 . ?templateMotifSequenceProfileAlignmentOperationP04135117 edam:has_input signature:MF_04201 ; rdf:type edam:operation_0300 . ?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04201121 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP04135MF_04201112 . ?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04201120 . ?targetMotifMatchRegionMatchBeginMF_04201120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04201113 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04201121 edam:has_input signature:MF_04201 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04135MF_04201110, 1, (STRLEN(?templateMotifCigarP04135MF_04201110) - STRLEN(REPLACE(?templateMotifCigarP04135MF_04201110, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionP04135111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04135MF_04201112, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201112) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04135MF_04201112, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201112) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) . BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_04201113) - 1) AS ?thisPositionOn33) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04135MF_04201110, 1, (STRLEN(?templateMotifCigarP04135MF_04201110) - STRLEN(REPLACE(?templateMotifCigarP04135MF_04201110, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionP04135111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04135MF_04201112, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201112) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04135MF_04201112, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201112) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) . BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_04201113) - 1) AS ?thisPositionOn34) . BIND(?this AS ?pfs1t126) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) . FILTER ((BOUND(?thisPositionOn33) && BOUND(?thisPositionOn34))) . BIND(URI(CONCAT(STR(?this), '#MF_04201a30')) AS ?annotation30) . BIND(?this AS ?pfs29) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP04135132 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04135134 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP04135MF_04201127 . ?templateMotifSequenceMatchRegionP04135132 faldo:begin ?templateMotifSequenceMatchBeginP04135133 . ?templateMotifSequenceMatchBeginP04135133 faldo:position ?templateMotifSequenceMatchBeginPositionP04135128 ; faldo:reference isoform:P04135-1 . ?templateMotifSequenceProfileAlignmentOperationP04135134 edam:has_input signature:MF_04201 ; rdf:type edam:operation_0300 . ?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04201138 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP04135MF_04201129 . ?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04201137 . ?targetMotifMatchRegionMatchBeginMF_04201137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04201130 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04201138 edam:has_input signature:MF_04201 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04135MF_04201127, 1, (STRLEN(?templateMotifCigarP04135MF_04201127) - STRLEN(REPLACE(?templateMotifCigarP04135MF_04201127, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP04135128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04135MF_04201129, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201129) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04135MF_04201129, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201129) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) . BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_04201130) - 1) AS ?thisPositionOn39) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04135MF_04201127, 1, (STRLEN(?templateMotifCigarP04135MF_04201127) - STRLEN(REPLACE(?templateMotifCigarP04135MF_04201127, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP04135128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04135MF_04201129, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201129) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04135MF_04201129, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201129) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) . BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_04201130) - 1) AS ?thisPositionOn40) . BIND(?this AS ?pfs1t143) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) . FILTER ((BOUND(?thisPositionOn39) && BOUND(?thisPositionOn40))) . BIND(URI(CONCAT(STR(?this), '#MF_04201a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP04135149 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04135151 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP04135MF_04201144 . ?templateMotifSequenceMatchRegionP04135149 faldo:begin ?templateMotifSequenceMatchBeginP04135150 . ?templateMotifSequenceMatchBeginP04135150 faldo:position ?templateMotifSequenceMatchBeginPositionP04135145 ; faldo:reference isoform:P04135-1 . ?templateMotifSequenceProfileAlignmentOperationP04135151 edam:has_input signature:MF_04201 ; rdf:type edam:operation_0300 . ?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04201155 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP04135MF_04201146 . ?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04201154 . ?targetMotifMatchRegionMatchBeginMF_04201154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04201147 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04201155 edam:has_input signature:MF_04201 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04135MF_04201144, 1, (STRLEN(?templateMotifCigarP04135MF_04201144) - STRLEN(REPLACE(?templateMotifCigarP04135MF_04201144, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionP04135145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04135MF_04201146, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201146) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04135MF_04201146, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201146) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) . BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_04201147) - 1) AS ?thisPositionOn45) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04135MF_04201144, 1, (STRLEN(?templateMotifCigarP04135MF_04201144) - STRLEN(REPLACE(?templateMotifCigarP04135MF_04201144, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP04135145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04135MF_04201146, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201146) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04135MF_04201146, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201146) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) . BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_04201147) - 1) AS ?thisPositionOn46) . BIND(?this AS ?pfs1t160) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) . FILTER ((BOUND(?thisPositionOn45) && BOUND(?thisPositionOn46))) . BIND(URI(CONCAT(STR(?this), '#MF_04201a42')) AS ?annotation42) . BIND(?this AS ?pfs41) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionP04135166 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04135168 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP04135MF_04201161 . ?templateMotifSequenceMatchRegionP04135166 faldo:begin ?templateMotifSequenceMatchBeginP04135167 . ?templateMotifSequenceMatchBeginP04135167 faldo:position ?templateMotifSequenceMatchBeginPositionP04135162 ; faldo:reference isoform:P04135-1 . ?templateMotifSequenceProfileAlignmentOperationP04135168 edam:has_input signature:MF_04201 ; rdf:type edam:operation_0300 . ?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04201172 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP04135MF_04201163 . ?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04201171 . ?targetMotifMatchRegionMatchBeginMF_04201171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04201164 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04201172 edam:has_input signature:MF_04201 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04135MF_04201161, 1, (STRLEN(?templateMotifCigarP04135MF_04201161) - STRLEN(REPLACE(?templateMotifCigarP04135MF_04201161, CONCAT('^(?:-*[^-]){', STR(((134 - ?templateMotifSequenceMatchBeginPositionP04135162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04135MF_04201163, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201163) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04135MF_04201163, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201163) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) . BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_04201164) - 1) AS ?thisPositionOn51) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04135MF_04201161, 1, (STRLEN(?templateMotifCigarP04135MF_04201161) - STRLEN(REPLACE(?templateMotifCigarP04135MF_04201161, CONCAT('^(?:-*[^-]){', STR(((262 - ?templateMotifSequenceMatchBeginPositionP04135162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04135MF_04201163, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201163) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04135MF_04201163, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201163) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) . BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_04201164) - 1) AS ?thisPositionOn52) . BIND(?this AS ?pfs1t177) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse50) . FILTER ((BOUND(?thisPositionOn51) && BOUND(?thisPositionOn52))) . BIND(URI(CONCAT(STR(?this), '#MF_04201a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP04135183 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04135185 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP04135MF_04201178 . ?templateMotifSequenceMatchRegionP04135183 faldo:begin ?templateMotifSequenceMatchBeginP04135184 . ?templateMotifSequenceMatchBeginP04135184 faldo:position ?templateMotifSequenceMatchBeginPositionP04135179 ; faldo:reference isoform:P04135-1 . ?templateMotifSequenceProfileAlignmentOperationP04135185 edam:has_input signature:MF_04201 ; rdf:type edam:operation_0300 . ?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04201189 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP04135MF_04201180 . ?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04201188 . ?targetMotifMatchRegionMatchBeginMF_04201188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04201181 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_04201189 edam:has_input signature:MF_04201 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04135MF_04201178, 1, (STRLEN(?templateMotifCigarP04135MF_04201178) - STRLEN(REPLACE(?templateMotifCigarP04135MF_04201178, CONCAT('^(?:-*[^-]){', STR(((237 - ?templateMotifSequenceMatchBeginPositionP04135179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04135MF_04201180, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201180) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04135MF_04201180, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201180) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) . BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_04201181) - 1) AS ?thisPositionOn57) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04135MF_04201178, 1, (STRLEN(?templateMotifCigarP04135MF_04201178) - STRLEN(REPLACE(?templateMotifCigarP04135MF_04201178, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionP04135179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04135MF_04201180, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201180) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04135MF_04201180, 1, (STRLEN(?targetMotifMatchCigarP04135MF_04201180) - STRLEN(REPLACE(?targetMotifMatchCigarP04135MF_04201180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) . BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_04201181) - 1) AS ?thisPositionOn58) . BIND(?this AS ?pfs1t194) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse56) . FILTER ((BOUND(?thisPositionOn57) && BOUND(?thisPositionOn58))) . BIND(URI(CONCAT(STR(?this), '#MF_04201a54')) AS ?annotation54) . BIND(?this AS ?pfs53) . } }