CONSTRUCT { _:20262 up:source unirule:MF_00051 . _:20263 up:source unirule:MF_00051 . _:20264 up:source unirule:MF_00051 . _:20265 up:source unirule:MF_00051 . _:20266 up:source unirule:MF_00051 . _:20267 up:source unirule:MF_00051 . _:20268 up:source unirule:MF_00051 . _:20269 up:source unirule:MF_00051 . _:20270 up:source unirule:MF_00051 . _:20271 up:source unirule:MF_00051 . _:20272 up:source unirule:MF_00051 . _:20273 up:source unirule:MF_00051 . _:20274 up:source unirule:MF_00051 . _:20275 up:source unirule:MF_00051 . _:20276 up:source unirule:MF_00051 . _:20277 up:source unirule:MF_00051 . _:20278 up:source unirule:MF_00051 . _:20279 up:source unirule:MF_00051 . _:20280 up:source unirule:MF_00051 . _:20281 up:source unirule:MF_00051 . _:20282 up:source unirule:MF_00051 . _:20283 up:source unirule:MF_00051 . _:20284 up:source unirule:MF_00051 . _:20285 up:source unirule:MF_00051 . _:20286 up:source unirule:MF_00051 . _:20287 up:source unirule:MF_00051 . _:20288 up:source unirule:MF_00051 . _:20289 up:source unirule:MF_00051 . _:20290 up:source unirule:MF_00051 . _:20291 up:source unirule:MF_00051 . _:20292 up:source unirule:MF_00051 . _:20293 up:source unirule:MF_00051 . ?this up:annotation ?annotation0 , ?annotation1 , ?annotation2 , ?annotation4 ; up:classifiedWith GO:0005737 , GO:0006730 , GO:0030170 , keyword:554 , keyword:663 , keyword:808 , keyword:963 . ?annotation0 up:cofactor chebi:597326 ; rdf:type up:Cofactor_Annotation . ?annotation1 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation2 a up:Subcellular_Location_Annotation . ?annotation2li3 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation4 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the SHMT family.' . ?case5 up:classifiedWith keyword:7 . ?case6 up:classifiedWith GO:0004372 , GO:0019264 , keyword:28 . ?case8 up:alternativeName ?name10 , ?name11 ; up:recommendedName ?name9 . ?name9 up:ecName '2.1.2.7' ; up:fullName '2-methylserine hydroxymethyltransferase' ; up:shortName 'MSHMT' ; rdf:type up:Structured_Name . ?name10 up:fullName 'Alpha-methylserine hydroxymethyltransferase' ; rdf:type up:Structured_Name . ?name11 up:fullName 'D-alanine 2-hydroxymethyltransferase' ; rdf:type up:Structured_Name . ?case14 up:recommendedName ?name15 . ?name15 up:ecName '2.1.2.1' ; up:fullName 'Probable serine hydroxymethyltransferase' ; up:shortName 'SHMT' , 'Serine methylase' ; rdf:type up:Structured_Name . ?case17 up:recommendedName ?name18 . ?name18 up:ecName '2.1.2.1' ; up:fullName 'Serine hydroxymethyltransferase' ; up:shortName 'SHMT' , 'Serine methylase' ; rdf:type up:Structured_Name . ?case19 up:recommendedName ?name20 . ?name20 up:ecName '2.1.2.-' ; up:fullName 'Serine hydroxymethyltransferase' ; up:shortName 'SHMT' , 'Serine methylase' ; rdf:type up:Structured_Name . ?pfs24 up:annotation ?annotation25 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; rdf:type up:Site_Annotation ; rdfs:comment 'Plays an important role in substrate specificity' . ?pfsb26 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb32 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb38 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfs42 up:annotation ?annotation43 . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb44 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?pfs48 up:annotation ?annotation49 . ?annotation49 faldo:begin ?pfsb50 ; faldo:end ?pfse51 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb50 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse51 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-acetyllysine' . ?pfsb56 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfs60 up:annotation ?annotation61 . ?annotation61 faldo:begin ?pfsb62 ; faldo:end ?pfse63 ; up:ligand ?ligand64 ; rdf:type up:Binding_Site_Annotation . ?pfsb62 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?pfse63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?ligand64 rdfs:subClassOf chebi:57453 . ?pfs67 up:annotation ?annotation68 . ?annotation68 faldo:begin ?pfsb69 ; faldo:end ?pfse70 ; up:ligand ?ligand71 ; rdf:type up:Binding_Site_Annotation . ?pfsb69 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?pfse70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?ligand71 rdfs:subClassOf chebi:57453 . ?pfs74 up:annotation ?annotation75 . ?annotation75 faldo:begin ?pfsb76 ; faldo:end ?pfse77 ; up:ligand ?ligand78 ; rdf:type up:Binding_Site_Annotation . ?pfsb76 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?pfse77 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?ligand78 rdfs:subClassOf chebi:57453 . ?pfs81 up:annotation ?annotation82 . ?annotation82 faldo:begin ?pfsb83 ; faldo:end ?pfse84 ; up:ligand ?ligand85 ; rdf:type up:Binding_Site_Annotation . ?pfsb83 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . ?pfse84 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?ligand85 rdfs:subClassOf chebi:57453 . ?pfs88 up:annotation ?annotation89 . ?annotation89 faldo:begin ?pfsb90 ; faldo:end ?pfse91 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-(pyridoxal phosphate)lysine' . ?pfsb90 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?pfse91 faldo:position ?thisPositionOn93 ; rdf:type faldo:ExactPosition . _:20294 a rdf:Statement ; up:attribution _:20262 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:20295 a rdf:Statement ; up:attribution _:20263 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:20296 a rdf:Statement ; up:attribution _:20264 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:20297 a rdf:Statement ; up:attribution _:20265 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:20298 a rdf:Statement ; up:attribution _:20266 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:20299 a rdf:Statement ; up:attribution _:20267 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:554 . _:20300 a rdf:Statement ; up:attribution _:20268 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:663 . _:20301 a rdf:Statement ; up:attribution _:20269 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:20302 a rdf:Statement ; up:attribution _:20270 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0030170 . _:20303 a rdf:Statement ; up:attribution _:20271 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006730 . _:20304 a rdf:Statement ; up:attribution _:20272 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:20305 a rdf:Statement ; up:attribution _:20273 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:7 . _:20306 a rdf:Statement ; up:attribution _:20274 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object keyword:28 . _:20307 a rdf:Statement ; up:attribution _:20275 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object GO:0004372 . _:20308 a rdf:Statement ; up:attribution _:20276 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object GO:0019264 . _:20309 a rdf:Statement ; up:attribution _:20277 ; rdf:subject ?case8 ; rdf:predicate up:recommendedName ; rdf:object ?name9 . _:20310 a rdf:Statement ; up:attribution _:20278 ; rdf:subject ?case8 ; rdf:predicate up:alternativeName ; rdf:object ?name10 . _:20311 a rdf:Statement ; up:attribution _:20279 ; rdf:subject ?case8 ; rdf:predicate up:alternativeName ; rdf:object ?name11 . _:20312 a rdf:Statement ; up:attribution _:20280 ; rdf:subject ?case14 ; rdf:predicate up:recommendedName ; rdf:object ?name15 . _:20313 a rdf:Statement ; up:attribution _:20281 ; rdf:subject ?case17 ; rdf:predicate up:recommendedName ; rdf:object ?name18 . _:20314 a rdf:Statement ; up:attribution _:20282 ; rdf:subject ?case19 ; rdf:predicate up:recommendedName ; rdf:object ?name20 . _:20315 a rdf:Statement ; up:source unirule:MF_00051 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:20316 a rdf:Statement ; up:attribution _:20283 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:20317 a rdf:Statement ; up:source unirule:MF_00051 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:20318 a rdf:Statement ; up:attribution _:20284 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:20319 a rdf:Statement ; up:source unirule:MF_00051 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:20320 a rdf:Statement ; up:attribution _:20285 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:20321 a rdf:Statement ; up:source unirule:MF_00051 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:20322 a rdf:Statement ; up:attribution _:20286 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:20323 a rdf:Statement ; up:source unirule:MF_00051 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:20324 a rdf:Statement ; up:attribution _:20287 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:20325 a rdf:Statement ; up:source unirule:MF_00051 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:20326 a rdf:Statement ; up:attribution _:20288 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:20327 a rdf:Statement ; up:source unirule:MF_00051 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:20328 a rdf:Statement ; up:attribution _:20289 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:20329 a rdf:Statement ; up:source unirule:MF_00051 ; rdf:subject ?pfs67 ; rdf:predicate up:annotation ; rdf:object ?annotation68 . _:20330 a rdf:Statement ; up:attribution _:20290 ; rdf:subject ?pfs67 ; rdf:predicate up:annotation ; rdf:object ?annotation68 . _:20331 a rdf:Statement ; up:source unirule:MF_00051 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:20332 a rdf:Statement ; up:attribution _:20291 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:20333 a rdf:Statement ; up:source unirule:MF_00051 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation82 . _:20334 a rdf:Statement ; up:attribution _:20292 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation82 . _:20335 a rdf:Statement ; up:source unirule:MF_00051 ; rdf:subject ?pfs88 ; rdf:predicate up:annotation ; rdf:object ?annotation89 . _:20336 a rdf:Statement ; up:attribution _:20293 ; rdf:subject ?pfs88 ; rdf:predicate up:annotation ; rdf:object ?annotation89 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00051 #Rule MF_00051 Created by:hamap on:2001-06-01 Modified by:ecastro on:2023-11-28 VALUES ?supertaxon94 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00051 . ?thisOrganism rdfs:subClassOf+ ?supertaxon94 . BIND(URI(CONCAT(STR(?this), '#MF_00051a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_00051a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_00051a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00051a4')) AS ?annotation4) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionP0A825100 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A825102 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A825MF_0005195 . ?templateMotifSequenceMatchRegionP0A825100 faldo:begin ?templateMotifSequenceMatchBeginP0A825101 . ?templateMotifSequenceMatchBeginP0A825101 faldo:position ?templateMotifSequenceMatchBeginPositionP0A82596 ; faldo:reference isoform:P0A825-1 . ?templateMotifSequenceProfileAlignmentOperationP0A825102 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . ?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00051106 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A825MF_0005197 . ?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00051105 . ?targetMotifMatchRegionMatchBeginMF_00051105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0005198 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00051106 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFT_5) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A825MF_0005195, 1, (STRLEN(?templateMotifCigarP0A825MF_0005195) - STRLEN(REPLACE(?templateMotifCigarP0A825MF_0005195, CONCAT('^(?:-*[^-]){', STR(((228 - ?templateMotifSequenceMatchBeginPositionP0A82596) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A825MF_0005197, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_0005197) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_0005197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A825MF_0005197, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_0005197) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_0005197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) . BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0005198) - 1) AS ?thisPositionOn28) . BIND(?thisPositionOn28 AS ?thisPositionOn29) . BIND(?this AS ?pfs1t109) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) . FILTER (REGEX('[HT]', SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00051a25')) AS ?annotation25) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionP0A825116 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A825118 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A825MF_00051111 . ?templateMotifSequenceMatchRegionP0A825116 faldo:begin ?templateMotifSequenceMatchBeginP0A825117 . ?templateMotifSequenceMatchBeginP0A825117 faldo:position ?templateMotifSequenceMatchBeginPositionP0A825112 ; faldo:reference isoform:P0A825-1 . ?templateMotifSequenceProfileAlignmentOperationP0A825118 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . ?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00051122 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A825MF_00051113 . ?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00051121 . ?targetMotifMatchRegionMatchBeginMF_00051121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00051114 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00051122 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagacetylation) . VALUES ?supertaxon110 {taxon:620 taxon:561} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon110 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A825MF_00051111, 1, (STRLEN(?templateMotifCigarP0A825MF_00051111) - STRLEN(REPLACE(?templateMotifCigarP0A825MF_00051111, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionP0A825112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A825MF_00051113, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051113) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A825MF_00051113, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051113) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) . BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00051114) - 1) AS ?thisPositionOn34) . BIND(?thisPositionOn34 AS ?thisPositionOn35) . BIND(?this AS ?pfs2t125) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00051a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP0A825132 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A825134 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A825MF_00051127 . ?templateMotifSequenceMatchRegionP0A825132 faldo:begin ?templateMotifSequenceMatchBeginP0A825133 . ?templateMotifSequenceMatchBeginP0A825133 faldo:position ?templateMotifSequenceMatchBeginPositionP0A825128 ; faldo:reference isoform:P0A825-1 . ?templateMotifSequenceProfileAlignmentOperationP0A825134 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . ?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00051138 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A825MF_00051129 . ?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00051137 . ?targetMotifMatchRegionMatchBeginMF_00051137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00051130 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00051138 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagacetylation) . VALUES ?supertaxon126 {taxon:620 taxon:561} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon126 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A825MF_00051127, 1, (STRLEN(?templateMotifCigarP0A825MF_00051127) - STRLEN(REPLACE(?templateMotifCigarP0A825MF_00051127, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionP0A825128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A825MF_00051129, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051129) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A825MF_00051129, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051129) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) . BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_00051130) - 1) AS ?thisPositionOn40) . BIND(?thisPositionOn40 AS ?thisPositionOn41) . BIND(?this AS ?pfs2t141) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00051a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionP0A825148 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A825150 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A825MF_00051143 . ?templateMotifSequenceMatchRegionP0A825148 faldo:begin ?templateMotifSequenceMatchBeginP0A825149 . ?templateMotifSequenceMatchBeginP0A825149 faldo:position ?templateMotifSequenceMatchBeginPositionP0A825144 ; faldo:reference isoform:P0A825-1 . ?templateMotifSequenceProfileAlignmentOperationP0A825150 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . ?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00051154 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A825MF_00051145 . ?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00051153 . ?targetMotifMatchRegionMatchBeginMF_00051153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00051146 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00051154 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagacetylation) . VALUES ?supertaxon142 {taxon:620 taxon:561} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon142 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A825MF_00051143, 1, (STRLEN(?templateMotifCigarP0A825MF_00051143) - STRLEN(REPLACE(?templateMotifCigarP0A825MF_00051143, CONCAT('^(?:-*[^-]){', STR(((285 - ?templateMotifSequenceMatchBeginPositionP0A825144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A825MF_00051145, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051145) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A825MF_00051145, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051145) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) . BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_00051146) - 1) AS ?thisPositionOn46) . BIND(?thisPositionOn46 AS ?thisPositionOn47) . BIND(?this AS ?pfs2t157) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00051a43')) AS ?annotation43) . BIND(?this AS ?pfs42) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionP0A825164 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A825166 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A825MF_00051159 . ?templateMotifSequenceMatchRegionP0A825164 faldo:begin ?templateMotifSequenceMatchBeginP0A825165 . ?templateMotifSequenceMatchBeginP0A825165 faldo:position ?templateMotifSequenceMatchBeginPositionP0A825160 ; faldo:reference isoform:P0A825-1 . ?templateMotifSequenceProfileAlignmentOperationP0A825166 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . ?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00051170 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A825MF_00051161 . ?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00051169 . ?targetMotifMatchRegionMatchBeginMF_00051169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00051162 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00051170 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagacetylation) . VALUES ?supertaxon158 {taxon:620 taxon:561} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon158 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A825MF_00051159, 1, (STRLEN(?templateMotifCigarP0A825MF_00051159) - STRLEN(REPLACE(?templateMotifCigarP0A825MF_00051159, CONCAT('^(?:-*[^-]){', STR(((354 - ?templateMotifSequenceMatchBeginPositionP0A825160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A825MF_00051161, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051161) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A825MF_00051161, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051161) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) . BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_00051162) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs2t173) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse51) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00051a49')) AS ?annotation49) . BIND(?this AS ?pfs48) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionP0A825180 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A825182 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A825MF_00051175 . ?templateMotifSequenceMatchRegionP0A825180 faldo:begin ?templateMotifSequenceMatchBeginP0A825181 . ?templateMotifSequenceMatchBeginP0A825181 faldo:position ?templateMotifSequenceMatchBeginPositionP0A825176 ; faldo:reference isoform:P0A825-1 . ?templateMotifSequenceProfileAlignmentOperationP0A825182 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . ?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00051186 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A825MF_00051177 . ?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00051185 . ?targetMotifMatchRegionMatchBeginMF_00051185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00051178 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00051186 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagacetylation) . VALUES ?supertaxon174 {taxon:620 taxon:561} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon174 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A825MF_00051175, 1, (STRLEN(?templateMotifCigarP0A825MF_00051175) - STRLEN(REPLACE(?templateMotifCigarP0A825MF_00051175, CONCAT('^(?:-*[^-]){', STR(((375 - ?templateMotifSequenceMatchBeginPositionP0A825176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A825MF_00051177, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051177) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A825MF_00051177, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051177) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) . BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_00051178) - 1) AS ?thisPositionOn58) . BIND(?thisPositionOn58 AS ?thisPositionOn59) . BIND(?this AS ?pfs2t189) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00051a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionP0A825195 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A825197 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A825MF_00051190 . ?templateMotifSequenceMatchRegionP0A825195 faldo:begin ?templateMotifSequenceMatchBeginP0A825196 . ?templateMotifSequenceMatchBeginP0A825196 faldo:position ?templateMotifSequenceMatchBeginPositionP0A825191 ; faldo:reference isoform:P0A825-1 . ?templateMotifSequenceProfileAlignmentOperationP0A825197 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . ?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00051201 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A825MF_00051192 . ?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00051200 . ?targetMotifMatchRegionMatchBeginMF_00051200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00051193 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00051201 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A825MF_00051190, 1, (STRLEN(?templateMotifCigarP0A825MF_00051190) - STRLEN(REPLACE(?templateMotifCigarP0A825MF_00051190, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionP0A825191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A825MF_00051192, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051192) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A825MF_00051192, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051192) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) . BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_00051193) - 1) AS ?thisPositionOn65) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A825MF_00051190, 1, (STRLEN(?templateMotifCigarP0A825MF_00051190) - STRLEN(REPLACE(?templateMotifCigarP0A825MF_00051190, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionP0A825191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A825MF_00051192, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051192) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A825MF_00051192, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051192) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) . BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_00051193) - 1) AS ?thisPositionOn66) . BIND(?this AS ?pfs3t206) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) . FILTER (REGEX('[GA]H[LIV]', SUBSTR(?thisSequenceValue, ?thisPositionOn65, (?thisPositionOn66 - ?thisPositionOn65)))) . BIND(URI(CONCAT(STR(?this), '#MF_00051a61')) AS ?annotation61) . BIND(?this AS ?pfs60) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch211 faldo:location ?templateMotifSequenceMatchRegionP0A825212 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A825214 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A825MF_00051207 . ?templateMotifSequenceMatchRegionP0A825212 faldo:begin ?templateMotifSequenceMatchBeginP0A825213 . ?templateMotifSequenceMatchBeginP0A825213 faldo:position ?templateMotifSequenceMatchBeginPositionP0A825208 ; faldo:reference isoform:P0A825-1 . ?templateMotifSequenceProfileAlignmentOperationP0A825214 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . ?targetMotifMatch215 faldo:location ?targetMotifMatchRegionMatch216 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00051218 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A825MF_00051209 . ?targetMotifMatchRegionMatch216 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00051217 . ?targetMotifMatchRegionMatchBeginMF_00051217 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00051210 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00051218 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A825MF_00051207, 1, (STRLEN(?templateMotifCigarP0A825MF_00051207) - STRLEN(REPLACE(?templateMotifCigarP0A825MF_00051207, CONCAT('^(?:-*[^-]){', STR(((355 - ?templateMotifSequenceMatchBeginPositionP0A825208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A825MF_00051209, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051209) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A825MF_00051209, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051209) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) . BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_00051210) - 1) AS ?thisPositionOn72) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A825MF_00051207, 1, (STRLEN(?templateMotifCigarP0A825MF_00051207) - STRLEN(REPLACE(?templateMotifCigarP0A825MF_00051207, CONCAT('^(?:-*[^-]){', STR(((357 - ?templateMotifSequenceMatchBeginPositionP0A825208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1221) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A825MF_00051209, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051209) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A825MF_00051209, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051209) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), '')))), '[^-]', ''))) AS ?step2222) . BIND(((?step2222 + ?targetMotifMatchRegionMatchBeginPositionMF_00051210) - 1) AS ?thisPositionOn73) . BIND(?this AS ?pfs3t223) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) . FILTER (REGEX('[ST][ARNDCQEGHILKMFPSTWYVBZJUOX]F', SUBSTR(?thisSequenceValue, ?thisPositionOn72, (?thisPositionOn73 - ?thisPositionOn72)))) . BIND(URI(CONCAT(STR(?this), '#MF_00051a68')) AS ?annotation68) . BIND(?this AS ?pfs67) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch228 faldo:location ?templateMotifSequenceMatchRegionP0A825229 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A825231 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A825MF_00051224 . ?templateMotifSequenceMatchRegionP0A825229 faldo:begin ?templateMotifSequenceMatchBeginP0A825230 . ?templateMotifSequenceMatchBeginP0A825230 faldo:position ?templateMotifSequenceMatchBeginPositionP0A825225 ; faldo:reference isoform:P0A825-1 . ?templateMotifSequenceProfileAlignmentOperationP0A825231 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . ?targetMotifMatch232 faldo:location ?targetMotifMatchRegionMatch233 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00051235 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A825MF_00051226 . ?targetMotifMatchRegionMatch233 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00051234 . ?targetMotifMatchRegionMatchBeginMF_00051234 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00051227 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00051235 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A825MF_00051224, 1, (STRLEN(?templateMotifCigarP0A825MF_00051224) - STRLEN(REPLACE(?templateMotifCigarP0A825MF_00051224, CONCAT('^(?:-*[^-]){', STR(((121 - ?templateMotifSequenceMatchBeginPositionP0A825225) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A825MF_00051226, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051226) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A825MF_00051226, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051226) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) . BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_00051227) - 1) AS ?thisPositionOn79) . BIND(?thisPositionOn79 AS ?thisPositionOn80) . BIND(?this AS ?pfs3t238) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'L')) . BIND(URI(CONCAT(STR(?this), '#MF_00051a75')) AS ?annotation75) . BIND(?this AS ?pfs74) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch243 faldo:location ?templateMotifSequenceMatchRegionP0A825244 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A825246 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A825MF_00051239 . ?templateMotifSequenceMatchRegionP0A825244 faldo:begin ?templateMotifSequenceMatchBeginP0A825245 . ?templateMotifSequenceMatchBeginP0A825245 faldo:position ?templateMotifSequenceMatchBeginPositionP0A825240 ; faldo:reference isoform:P0A825-1 . ?templateMotifSequenceProfileAlignmentOperationP0A825246 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . ?targetMotifMatch247 faldo:location ?targetMotifMatchRegionMatch248 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00051250 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A825MF_00051241 . ?targetMotifMatchRegionMatch248 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00051249 . ?targetMotifMatchRegionMatchBeginMF_00051249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00051242 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00051250 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A825MF_00051239, 1, (STRLEN(?templateMotifCigarP0A825MF_00051239) - STRLEN(REPLACE(?templateMotifCigarP0A825MF_00051239, CONCAT('^(?:-*[^-]){', STR(((246 - ?templateMotifSequenceMatchBeginPositionP0A825240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1251) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A825MF_00051241, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051241) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A825MF_00051241, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051241) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), '')))), '[^-]', ''))) AS ?step2252) . BIND(((?step2252 + ?targetMotifMatchRegionMatchBeginPositionMF_00051242) - 1) AS ?thisPositionOn86) . BIND(?thisPositionOn86 AS ?thisPositionOn87) . BIND(?this AS ?pfs3t253) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb83) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse84) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00051a82')) AS ?annotation82) . BIND(?this AS ?pfs81) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch258 faldo:location ?templateMotifSequenceMatchRegionP0A825259 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A825261 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A825MF_00051254 . ?templateMotifSequenceMatchRegionP0A825259 faldo:begin ?templateMotifSequenceMatchBeginP0A825260 . ?templateMotifSequenceMatchBeginP0A825260 faldo:position ?templateMotifSequenceMatchBeginPositionP0A825255 ; faldo:reference isoform:P0A825-1 . ?templateMotifSequenceProfileAlignmentOperationP0A825261 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . ?targetMotifMatch262 faldo:location ?targetMotifMatchRegionMatch263 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00051265 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A825MF_00051256 . ?targetMotifMatchRegionMatch263 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00051264 . ?targetMotifMatchRegionMatchBeginMF_00051264 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00051257 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00051265 edam:has_input signature:MF_00051 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A825MF_00051254, 1, (STRLEN(?templateMotifCigarP0A825MF_00051254) - STRLEN(REPLACE(?templateMotifCigarP0A825MF_00051254, CONCAT('^(?:-*[^-]){', STR(((229 - ?templateMotifSequenceMatchBeginPositionP0A825255) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1266) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A825MF_00051256, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051256) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1266), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A825MF_00051256, 1, (STRLEN(?targetMotifMatchCigarP0A825MF_00051256) - STRLEN(REPLACE(?targetMotifMatchCigarP0A825MF_00051256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1266), '}'), '')))), '[^-]', ''))) AS ?step2267) . BIND(((?step2267 + ?targetMotifMatchRegionMatchBeginPositionMF_00051257) - 1) AS ?thisPositionOn92) . BIND(?thisPositionOn92 AS ?thisPositionOn93) . BIND(?this AS ?pfs3t268) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb90) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse91) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00051a89')) AS ?annotation89) . BIND(?this AS ?pfs88) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag269) . } BIND(IF(BOUND(?tagacetylation), ?caseWithTag269, ?UNBOUND_VARIABLE) AS ?case5) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag270) . } BIND(IF(BOUND(?tagFT_5), ?caseWithTag270, ?UNBOUND_VARIABLE) AS ?case6) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?caseWithTag271) . } BIND(IF(BOUND(?tagFT_5), ?caseWithTag271, ?UNBOUND_VARIABLE) AS ?case7) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?caseWithTag272) . BIND(URI(CONCAT(STR(?this), '#MF_00051a9')) AS ?name9) . BIND(URI(CONCAT(STR(?this), '#MF_00051a10')) AS ?name10) . BIND(URI(CONCAT(STR(?this), '#MF_00051a11')) AS ?name11) . } BIND(IF((BOUND(?tagFT_5) || BOUND(?tagFT_5)), ?caseWithTag272, ?UNBOUND_VARIABLE) AS ?case8) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?caseWithTag273) . } BIND(IF((BOUND(?tagFT_5) || BOUND(?tagFT_5)), ?caseWithTag273, ?UNBOUND_VARIABLE) AS ?case12) . OPTIONAL { ?this a up:Protein . VALUES ?supertaxon274 {taxon:2 taxon:224756 taxon:183963} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon274 . BIND(?this AS ?case13) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?caseWithTag275) . BIND(URI(CONCAT(STR(?this), '#MF_00051a15')) AS ?name15) . } BIND(IF(BOUND(?tagFT_5), ?caseWithTag275, ?UNBOUND_VARIABLE) AS ?case14) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?caseWithTag276) . } BIND(IF(BOUND(?tagFT_5), ?caseWithTag276, ?UNBOUND_VARIABLE) AS ?case16) . OPTIONAL { ?this a up:Protein . { ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . } UNION { VALUES ?supertaxon277 {taxon:224756 taxon:183963} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon277 . } BIND(?this AS ?caseWithTag278) . BIND(URI(CONCAT(STR(?this), '#MF_00051a18')) AS ?name18) . } BIND(IF(BOUND(?tagFT_5), ?caseWithTag278, ?UNBOUND_VARIABLE) AS ?case17) . OPTIONAL { ?this a up:Protein . { ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon279 {taxon:2 taxon:224756 taxon:183963} ?thisOrganism rdfs:subClassOf+ ?supertaxon279 . })) . } UNION { ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon280 {taxon:224756 taxon:183963} ?thisOrganism rdfs:subClassOf+ ?supertaxon280 . })) . } BIND(?this AS ?caseWithTag281) . BIND(URI(CONCAT(STR(?this), '#MF_00051a20')) AS ?name20) . } BIND(IF((BOUND(?tagFT_5) || BOUND(?tagFT_5)), ?caseWithTag281, ?UNBOUND_VARIABLE) AS ?case19) . OPTIONAL { ?this a up:Protein . { ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:224756 . } UNION { ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:183963 . } UNION { VALUES ?supertaxon282 {taxon:224756 taxon:183963} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon282 . } BIND(?this AS ?caseWithTag283) . } BIND(IF((BOUND(?tagFT_5) || BOUND(?tagFT_5)), ?caseWithTag283, ?UNBOUND_VARIABLE) AS ?case21) . OPTIONAL { ?this a up:Protein . { ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon284 {taxon:224756 taxon:183925 taxon:183988 taxon:183980 taxon:183939 taxon:2 taxon:183963} ?thisOrganism rdfs:subClassOf+ ?supertaxon284 . })) . } UNION { ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon285 {taxon:224756 taxon:183925 taxon:183988 taxon:183980 taxon:183939 taxon:183963} ?thisOrganism rdfs:subClassOf+ ?supertaxon285 . })) . } BIND(?this AS ?caseWithTag286) . } BIND(IF((BOUND(?tagFT_5) || BOUND(?tagFT_5)), ?caseWithTag286, ?UNBOUND_VARIABLE) AS ?case22) . OPTIONAL { ?this a up:Protein . { ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:183925 . } UNION { ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:183939 . } UNION { ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:183988 . } UNION { ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:183980 . } UNION { VALUES ?supertaxon287 {taxon:183925 taxon:183939 taxon:183988 taxon:183980} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon287 . } BIND(?this AS ?caseWithTag288) . } BIND(IF((BOUND(?tagFT_5) || BOUND(?tagFT_5)), ?caseWithTag288, ?UNBOUND_VARIABLE) AS ?case23) . }